Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013468

Physical Location & Seq

Genomic Coordinates Reverse (-)

7584866 .. 7586404

Gene Structure 1539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16771

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCAACCTCACTAAAGAGAACATTTGGCTCAATCCTGTCTTCCATTGCATTCTTGTGTTACGCGAACGATCAGCACCACGATCAACGCTACCATCAACACCACCATCAACACCACCATCACAAAAGCAGAAGCAACATCCACAAACTCAAGTACAACATGCCTAGGGGTCGACCCCTTTCGTTGCAGACTGTGGAGCTTAAGGTCAGGATGTGCTGCACTGGTTGTGAGAGAGTTGTCAAACATGCAATATTCAAGCTCAGAGGGATTGATTCGGTGGATGTGAATCTACCAATGGAAAAGGTGACAGTAGTTGGGTATGTTGAACGGAACAAGGTACTAAAGGCGGTGAGGAGGGCTGGAAAGAGGGCCGAATTCTGGCCTTACCCCAACCCTCCCTTGTACTTCACATCCACCACTGACTATTTCAAGGACACAACCAATGAGTTCAAAGAGAGCTACAATTACTACAGGCATGGTTACAACATTGGGGACAAGCATGGTACCATTCCGATGACTCAACGGGGAGACGATAAAGTCAGCAACATGTTCAACGATGATAATGTCAATGCTTGCTCTGTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

195

Amino Acids

22.76

Weight (kDa)

9.49

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	68 - 122	3.3e-12	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18196 AT2G18196
fragaria_vesca	FvH4_5g10380 FvH4_5g10380
malus_domestica	MD06G1124600.v1.1 MD14G1141600.v1.1
prunus_persica	Prupe.5G135200_v2.0.a1
pyrus_communis	pycom06g11500 pycom14g11670
rosa_chinensis	RchiOBHm_Chr7g0187841
rosa_laevigata	RLG00000004752
rosa_multiflora	Rmu_sc0004483.1_g000045
rosa_roxburghii	Rroxscaffold_3G00267010
rosa_rugosa	Rorug06G0484700
rosa_samantha	Rh7BG091600 Rh7CG090700 Rh7DG092400
rosa_wichuraiana	Rw7G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
Acc65I	GGTACC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	172
AccII	CGCG	1 cut(s)	65
AciI	CCGC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	374
AfaI	GTAC	4 cut(s)	155, 339, 404, 505
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflII	CTTAAG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	5 cut(s)	256, 326, 430, 451, 553
AluBI	AGCT	3 cut(s)	199, 259, 459
AluI	AGCT	3 cut(s)	199, 259, 459
Alw26I	GTCTC	1 cut(s)	522
AoxI	GGCC	2 cut(s)	369, 380
ApeKI	GCWGC	1 cut(s)	216
ApoI	RAATTY	1 cut(s)	374
Asp718I	GGTACC	1 cut(s)	503
AspA2I	CCTAGG	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	316, 361
AvrII	CCTAGG	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	3 cut(s)	102, 114, 126
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	469
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	217
BlnI	CCTAGG	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	505
BpiI	GAAGAC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	4 cut(s)	138, 216, 286, 410
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	203
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	371, 382
BshNI	GGYRCC	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	522
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	371, 382
Bsp143I	GATC	2 cut(s)	70, 82
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	2 cut(s)	371, 382
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	505
BspT107I	GGYRCC	1 cut(s)	503
BspTI	CTTAAG	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	2 cut(s)	70, 82
BssT1I	CCWWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	193, 310
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	574
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	4 cut(s)	138, 216, 286, 410
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	2 cut(s)	73, 85
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	2 cut(s)	70, 82
BstNSI	RCATGY	3 cut(s)	163, 248, 550
BstSFI	CTRYAG	1 cut(s)	469
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	371, 382
BtsCI	GGATG	4 cut(s)	138, 216, 286, 410
BtsIMutI	CAGTG	2 cut(s)	219, 417
Cac8I	GCNNGC	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	4 cut(s)	154, 338, 403, 504
CviAII	CATG	6 cut(s)	160, 245, 476, 500, 547, 583
CviJI	RGCY	7 cut(s)	30, 199, 259, 359, 371, 382, 459
CviKI_1	RGCY	7 cut(s)	30, 199, 259, 359, 371, 382, 459
CviQI	GTAC	4 cut(s)	154, 338, 403, 504
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	2 cut(s)	72, 84
DpnII	GATC	2 cut(s)	70, 82
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	6 cut(s)	163, 248, 479, 503, 550, 586
FaiI	YATR	7 cut(s)	161, 246, 321, 477, 501, 548, 584
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	6 cut(s)	159, 244, 475, 499, 546, 582
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	4 cut(s)	125, 223, 293, 397
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	371, 382
Hin1II	CATG	6 cut(s)	163, 248, 479, 503, 550, 586
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HinfI	GANTC	3 cut(s)	272, 286, 517
HphI	GGTGA	2 cut(s)	316, 361
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	2 cut(s)	263, 513
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	193, 310
HpyCH4V	TGCA	4 cut(s)	50, 187, 219, 248
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	6 cut(s)	163, 248, 479, 503, 550, 586
KpnI	GGTACC	1 cut(s)	507
Kzo9I	GATC	2 cut(s)	70, 82
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	6 cut(s)	50, 193, 207, 345, 364, 457
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	3 cut(s)	59, 304, 479
MalI	GATC	2 cut(s)	72, 84
MboI	GATC	2 cut(s)	70, 82
MboII	GAAGA	1 cut(s)	33
MluCI	AATT	2 cut(s)	374, 463
MlyI	GAGTC	1 cut(s)	511
MnlI	CCTC	6 cut(s)	19, 257, 345, 348, 360, 405
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	2 cut(s)	55, 512
MspCI	CTTAAG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	50
MvnI	CGCG	1 cut(s)	65
NdeII	GATC	2 cut(s)	70, 82
NlaIII	CATG	6 cut(s)	163, 248, 479, 503, 550, 586
NlaIV	GGNNCC	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	3 cut(s)	163, 248, 550
PciI	ACATGT	1 cut(s)	546
PctI	GAATGC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	272, 286
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PscI	ACATGT	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	505
PspPI	GGNCC	1 cut(s)	369
RsaI	GTAC	4 cut(s)	155, 339, 404, 505
RsaNI	GTAC	4 cut(s)	154, 338, 403, 504
RseI	CAYNNNNRTG	2 cut(s)	55, 512
SalI	GTCGAC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	70, 82
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	511
SetI	ASST	7 cut(s)	11, 201, 207, 261, 306, 339, 461
SfcI	CTRYAG	1 cut(s)	469
SmiMI	CAYNNNNRTG	2 cut(s)	55, 512
SmlI	CTYRAG	2 cut(s)	149, 200
SmoI	CTYRAG	2 cut(s)	149, 200
Sse9I	AATT	2 cut(s)	374, 463
SsiI	CCGC	1 cut(s)	347
SspI	AATATT	1 cut(s)	252
SspMI	CTAG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	193, 310
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	374, 463
TatI	WGTACW	2 cut(s)	153, 402
TfiI	GAWTC	2 cut(s)	272, 286
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	226, 424
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	2 cut(s)	226, 424
Vha464I	CTTAAG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	3 cut(s)	163, 248, 550
XmaJI	CCTAGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	172
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.