Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013468

Physical Location & Seq

Genomic Coordinates Reverse (-)

14750334 .. 14751601

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCAACCCTACTAAAGAGAACATTTGGCTCTTTCATATCTTCCATTGCATACTACTCGTACTTTAACAACCAAGATCATCACCACCACCGTCACCACCACTACGAAAGCATCATCAACAGGAAAATCAAACACACCATGCCAAGGGGTCGGCCGCTTTCACTAGAGACTGTGGAGCTCAAAGTCAGGATGTGCTGCACTGGCTGTGAAAGAGTTGTGAAAAATGCCATTTTCAAGCTCAGAGGGATTGATTCTGTGGATGTGGATCTACCAATGGAAAAGGTGACTGTAATCGGGTACGTTGATCGCAACAAAGTCCTCAAGGCAGTGAGGAGGGCTGGAAAAAGGGCTGAGTTCTGGCCCTACCCCAACCCTCCATTGTACTTCACATCTTCAAGTGACTATTTTAAGGACACAACCAATGAATTCAAAGAGAGCTACAACTACTATAAGCATGGCTACAATGTTGGGGACAAACATGGAAATATTCCAGTGACTCAGAGGGGAGATGACAAAGTTAGCAACATGTTCAATGATGATAATGTCAATGCTTGTTGCCTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

189

Amino Acids

21.92

Weight (kDa)

9.22

Isoelectric Point (pI)

25.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18196 AT2G18196
fragaria_vesca	FvH4_5g10380 FvH4_5g10380
malus_domestica	MD06G1124600.v1.1 MD14G1141600.v1.1
prunus_persica	Prupe.5G135200_v2.0.a1
pyrus_communis	pycom06g11500 pycom14g11670
rosa_chinensis	RchiOBHm_Chr7g0187841
rosa_laevigata	RLG00000004752
rosa_multiflora	Rmu_sc0004483.1_g000045
rosa_roxburghii	Rroxscaffold_3G00267010
rosa_rugosa	Rorug06G0484700
rosa_samantha	Rh7BG091600 Rh7CG090700 Rh7DG092400
rosa_wichuraiana	Rw7G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	3 cut(s)	62, 299, 383
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	4 cut(s)	235, 396, 430, 532
AluBI	AGCT	3 cut(s)	178, 238, 438
AluI	AGCT	3 cut(s)	178, 238, 438
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	273
AoxI	GGCC	2 cut(s)	152, 359
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	74, 86, 295
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	182
BcgI	CGANNNNNNTGC	2 cut(s)	39, 73
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	2 cut(s)	155, 196
BlsI	GCNGC	2 cut(s)	156, 197
BmgT120I	GGNCC	1 cut(s)	360
BmsI	GCATC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	205, 491
Bse3DI	GCAATG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	2 cut(s)	195, 265
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	253, 342, 512
BseNI	ACTGG	2 cut(s)	205, 491
BseRI	GAGGAG	1 cut(s)	346
BseX3I	CGGCCG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	181
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	154, 361
BsiEI	CGRYCG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	154, 361
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	76, 265, 304
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	2 cut(s)	154, 361
BspCNI	CTCAG	3 cut(s)	252, 343, 511
BspPI	GGATC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	205, 491
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	3 cut(s)	76, 265, 304
BssT1I	CCWWGG	1 cut(s)	143
Bst4CI	ACNGT	3 cut(s)	92, 172, 289
BstDEI	CTNAG	3 cut(s)	239, 351, 498
BstF5I	GGATG	2 cut(s)	195, 265
BstKTI	GATC	3 cut(s)	79, 268, 307
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	3 cut(s)	76, 265, 304
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	529
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BstZI	CGGCCG	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	154, 361
BtsCI	GGATG	2 cut(s)	195, 265
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	3 cut(s)	198, 333, 498
Cfr13I	GGNCC	1 cut(s)	360
Csp6I	GTAC	3 cut(s)	61, 298, 382
CviAII	CATG	4 cut(s)	139, 455, 479, 526
CviQI	GTAC	3 cut(s)	61, 298, 382
DdeI	CTNAG	3 cut(s)	239, 351, 498
DpnI	GATC	3 cut(s)	78, 267, 306
DpnII	GATC	3 cut(s)	76, 265, 304
EaeI	YGGCCR	1 cut(s)	152
EagI	CGGCCG	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	180
Eco52I	CGGCCG	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	4 cut(s)	142, 458, 482, 529
FaiI	YATR	8 cut(s)	38, 52, 140, 450, 456, 480, 527, 563
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	4 cut(s)	138, 454, 478, 525
Fnu4HI	GCNGC	2 cut(s)	155, 196
FokI	GGATG	2 cut(s)	202, 272
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	155, 196
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	155, 196
HaeIII	GGCC	2 cut(s)	154, 361
Hin1II	CATG	4 cut(s)	142, 458, 482, 529
HinfI	GANTC	2 cut(s)	251, 496
HphI	GGTGA	3 cut(s)	74, 86, 295
Hpy188I	TCNGA	2 cut(s)	242, 501
Hpy188III	TCNNGA	1 cut(s)	187
HpyCH4III	ACNGT	3 cut(s)	92, 172, 289
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	2 cut(s)	50, 198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	3 cut(s)	239, 351, 498
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	142, 458, 482, 529
Kzo9I	GATC	3 cut(s)	76, 265, 304
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	6 cut(s)	106, 172, 186, 324, 343, 504
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	4 cut(s)	92, 283, 398, 493
MalI	GATC	3 cut(s)	78, 267, 306
MboI	GATC	3 cut(s)	76, 265, 304
MboII	GAAGA	2 cut(s)	33, 384
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	490
MnlI	CCTC	6 cut(s)	236, 324, 327, 329, 384, 495
MseI	TTAA	2 cut(s)	66, 408
MwoI	GCNNNNNNNGC	1 cut(s)	201
NdeII	GATC	3 cut(s)	76, 265, 304
NlaIII	CATG	4 cut(s)	142, 458, 482, 529
NmuCI	GTSAC	4 cut(s)	92, 283, 398, 493
NspI	RCATGY	1 cut(s)	529
PciI	ACATGT	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	156, 197
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PscI	ACATGT	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	3 cut(s)	62, 299, 383
RsaNI	GTAC	3 cut(s)	61, 298, 382
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	66, 408
SatI	GCNGC	2 cut(s)	155, 196
Sau3AI	GATC	3 cut(s)	76, 265, 304
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	1 cut(s)	490
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	5 cut(s)	180, 240, 285, 303, 440
SfaNI	GCATC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	1 cut(s)	425
SsiI	CCGC	1 cut(s)	155
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	3 cut(s)	92, 172, 289
TaiI	ACGT	1 cut(s)	303
TasI	AATT	1 cut(s)	425
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	66, 408
Tru9I	TTAA	2 cut(s)	66, 408
TscAI	CASTG	3 cut(s)	205, 333, 498
TseFI	GTSAC	4 cut(s)	92, 283, 398, 493
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	4 cut(s)	92, 283, 398, 493
TspDTI	ATGAA	2 cut(s)	25, 438
TspRI	CASTG	3 cut(s)	205, 333, 498
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	529
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.