Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013468

Physical Location & Seq

Genomic Coordinates Reverse (-)

7755892 .. 7757137

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG092400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCCTAGGGGTCGACCCCTTTCGTTGCAGACTGTGGAGCTTAAGGTCAGGATGTGCTGCACTGGTTGTGAGAGAGTTGTCAAACATGCAATATTCAAGCTCAGAGGGATTGATTCGGTGGATGTGAATCTACCAATGGAAAAGGTGACAGTAGTTGGGTATGTTGAACGGAACAAGGTACTAAAGGCGGTGAGGAGGGCTGGAAAGAGGGCCGAATTCTGGCCTTACCCCAACCCTCCCTTGTACTTCACATCCACCACTGACTATTTCAAGGACACAACCAATGAGTTCAAAGAGAGCTACAATTACTACAGGCATGGTTACAACATTGGGGACAAGCATGGTACCATTCCGATGACTCAACGGGGAGACGATAAAGTCAGCAACATGTTCAACGATGATAATGTCAATGCTTGCTCTGTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

142

Amino Acids

16.38

Weight (kDa)

9.19

Isoelectric Point (pI)

20.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	15 - 69	1.7e-12	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18196 AT2G18196
fragaria_vesca	FvH4_5g10380 FvH4_5g10380
malus_domestica	MD06G1124600.v1.1 MD14G1141600.v1.1
prunus_persica	Prupe.5G135200_v2.0.a1
pyrus_communis	pycom06g11500 pycom14g11670
rosa_chinensis	RchiOBHm_Chr7g0187841
rosa_laevigata	RLG00000004752
rosa_multiflora	Rmu_sc0004483.1_g000045
rosa_roxburghii	Rroxscaffold_3G00267010
rosa_rugosa	Rorug06G0484700
rosa_samantha	Rh7BG091600 Rh7CG090700 Rh7DG092400
rosa_wichuraiana	Rw7G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc65I	GGTACC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	13
AciI	CCGC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	215
AfaI	GTAC	3 cut(s)	180, 245, 346
AfiI	CCNNNNNNNGG	1 cut(s)	219
AflII	CTTAAG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	5 cut(s)	97, 167, 271, 292, 394
AluBI	AGCT	3 cut(s)	40, 100, 300
AluI	AGCT	3 cut(s)	40, 100, 300
Alw26I	GTCTC	1 cut(s)	363
AoxI	GGCC	2 cut(s)	210, 221
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	215
Asp718I	GGTACC	1 cut(s)	344
AspA2I	CCTAGG	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	157, 202
AvrII	CCTAGG	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	310
BfrI	CTTAAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	58
BlnI	CCTAGG	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	67
Bse8I	GATNNNNATC	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	3 cut(s)	57, 127, 251
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	212, 223
BshNI	GGYRCC	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	212, 223
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	212, 223
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	34, 151
BstAFI	CTTAAG	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	3 cut(s)	57, 127, 251
BstMAI	GTCTC	1 cut(s)	363
BstNSI	RCATGY	2 cut(s)	89, 391
BstSFI	CTRYAG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	212, 223
BtsCI	GGATG	3 cut(s)	57, 127, 251
BtsIMutI	CAGTG	2 cut(s)	60, 258
Cac8I	GCNNGC	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	3 cut(s)	179, 244, 345
CviAII	CATG	5 cut(s)	86, 317, 341, 388, 424
CviJI	RGCY	6 cut(s)	40, 100, 200, 212, 223, 300
CviKI_1	RGCY	6 cut(s)	40, 100, 200, 212, 223, 300
CviQI	GTAC	3 cut(s)	179, 244, 345
DdeI	CTNAG	1 cut(s)	101
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	5 cut(s)	89, 320, 344, 391, 427
FaiI	YATR	6 cut(s)	87, 162, 318, 342, 389, 425
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	5 cut(s)	85, 316, 340, 387, 423
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	3 cut(s)	64, 134, 238
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	212, 223
Hin1II	CATG	5 cut(s)	89, 320, 344, 391, 427
HincII	GTYRAC	1 cut(s)	14
HindII	GTYRAC	1 cut(s)	14
HinfI	GANTC	3 cut(s)	113, 127, 358
HphI	GGTGA	2 cut(s)	157, 202
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	104, 354
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4III	ACNGT	2 cut(s)	34, 151
HpyCH4V	TGCA	3 cut(s)	28, 60, 89
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	89, 320, 344, 391, 427
KpnI	GGTACC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	34, 48, 186, 205, 298
Lsp1109I	GCAGC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	145, 320
MluCI	AATT	2 cut(s)	215, 304
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	5 cut(s)	98, 186, 189, 201, 246
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	353
MspCI	CTTAAG	1 cut(s)	41
NlaIII	CATG	5 cut(s)	89, 320, 344, 391, 427
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	2 cut(s)	89, 391
PciI	ACATGT	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	113, 127
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PscI	ACATGT	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	210
RsaI	GTAC	3 cut(s)	180, 245, 346
RsaNI	GTAC	3 cut(s)	179, 244, 345
RseI	CAYNNNNRTG	1 cut(s)	353
SalI	GTCGAC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	352
SetI	ASST	6 cut(s)	42, 48, 102, 147, 180, 302
SfcI	CTRYAG	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	215, 304
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	34, 151
TaqI	TCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	215, 304
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	113, 127
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	67, 265
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	67, 265
Vha464I	CTTAAG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	2 cut(s)	89, 391
XmaJI	CCTAGG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.