Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013468

Physical Location & Seq

Genomic Coordinates Reverse (-)

16800170 .. 16801481

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCAAACCTACTAAACAGAACATTTGGCTCTTTCATATCTTCCATTGCATGCTACTCTTACTTTAACAACAACGATCATCACCACCACCACCACCATCACTACCAAAGCTTCATCAACAATAAGAAAATCAAACACAGCATGCCAAGGGGTCGGCCGCTTTCGCTACAGACTGTGGAGCTCAAAGTCAGGATGTGCTGCACTGGCTGTGAAAGAGTGGTGAAAAATGCCATTTTCAAGCTCAGAGGGATTGATTCTGTGGATGTGAATCTACCATTGGAAAAGGTGACAGTAATTGGGTACGTTGATCGCAACAAAGTCCTCAAGGCAGTGAGGAGGGCTGGAAAAAGGGCCGAGTTCTGGCCCTACTCCAACCCTCCATTGTACTTCACATCTTCAAATGACTATTTTAAGGACACAACCAATGAATTCAAAGAGAGCTACAACTACTATAGGCATGGCTACAATGTTGGGGACAAACATGGGACCATTCCAGTGACTCAAAGGGGAGATGACAAAGTTAGCAACATGTTCAATGATGATAATGTCAATGCGTGTTGCCTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

190

Amino Acids

21.94

Weight (kDa)

9.28

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18196 AT2G18196
fragaria_vesca	FvH4_5g10380 FvH4_5g10380
malus_domestica	MD06G1124600.v1.1 MD14G1141600.v1.1
prunus_persica	Prupe.5G135200_v2.0.a1
pyrus_communis	pycom06g11500 pycom14g11670
rosa_chinensis	RchiOBHm_Chr7g0187841
rosa_laevigata	RLG00000004752
rosa_multiflora	Rmu_sc0004483.1_g000045
rosa_roxburghii	Rroxscaffold_3G00267010
rosa_rugosa	Rorug06G0484700
rosa_samantha	Rh7BG091600 Rh7CG090700 Rh7DG092400
rosa_wichuraiana	Rw7G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	2 cut(s)	302, 386
AfiI	CCNNNNNNNGG	1 cut(s)	360
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	4 cut(s)	238, 399, 433, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	4 cut(s)	111, 181, 241, 441
AluI	AGCT	4 cut(s)	111, 181, 241, 441
Alw21I	GWGCWC	1 cut(s)	183
AoxI	GGCC	3 cut(s)	155, 351, 362
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	428
AspS9I	GGNCC	3 cut(s)	351, 363, 486
AsuHPI	GGTGA	3 cut(s)	74, 232, 298
AvaII	GGWCC	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	105
BfmI	CTRYAG	2 cut(s)	167, 451
BisI	GCNGC	2 cut(s)	158, 199
BlsI	GCNGC	2 cut(s)	159, 200
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	3 cut(s)	351, 363, 486
BmiI	GGNNCC	1 cut(s)	487
BpuEI	CTTGAG	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse1I	ACTGG	2 cut(s)	208, 494
Bse3DI	GCAATG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	2 cut(s)	198, 268
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	208, 494
BseRI	GAGGAG	1 cut(s)	349
BseX3I	CGGCCG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	3 cut(s)	157, 353, 364
BsiEI	CGRYCG	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	488, 499
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmFI	GGGAC	2 cut(s)	488, 499
BsnI	GGCC	3 cut(s)	157, 353, 364
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	76, 307
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	3 cut(s)	157, 353, 364
BspCNI	CTCAG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	208, 494
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	76, 307
BssT1I	CCWWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	175, 292
BstC8I	GCNNGC	2 cut(s)	52, 143
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	198, 268
BstKTI	GATC	2 cut(s)	79, 310
BstMBI	GATC	2 cut(s)	76, 307
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 204
BstNSI	RCATGY	3 cut(s)	54, 145, 532
BstSFI	CTRYAG	2 cut(s)	167, 451
BstV1I	GCAGC	1 cut(s)	185
BstZI	CGGCCG	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	157, 353, 364
BtsCI	GGATG	2 cut(s)	198, 268
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	3 cut(s)	201, 336, 501
Cac8I	GCNNGC	2 cut(s)	52, 143
Cfr13I	GGNCC	3 cut(s)	351, 363, 486
Csp6I	GTAC	2 cut(s)	301, 385
CviAII	CATG	5 cut(s)	51, 142, 458, 482, 529
CviQI	GTAC	2 cut(s)	301, 385
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	2 cut(s)	78, 309
DpnII	GATC	2 cut(s)	76, 307
EaeI	YGGCCR	1 cut(s)	155
EagI	CGGCCG	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	486
Eco52I	CGGCCG	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	5 cut(s)	54, 145, 461, 485, 532
FaiI	YATR	8 cut(s)	38, 52, 143, 453, 459, 483, 530, 566
FaqI	GGGAC	2 cut(s)	488, 499
FatI	CATG	5 cut(s)	50, 141, 457, 481, 528
Fnu4HI	GCNGC	2 cut(s)	158, 199
FokI	GGATG	2 cut(s)	205, 275
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	158, 199
GluI	GCNGC	2 cut(s)	158, 199
HaeIII	GGCC	3 cut(s)	157, 353, 364
Hin1II	CATG	5 cut(s)	54, 145, 461, 485, 532
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	3 cut(s)	254, 268, 499
HphI	GGTGA	3 cut(s)	74, 232, 298
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	175, 292
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	50, 201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 204
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	5 cut(s)	54, 145, 461, 485, 532
Kzo9I	GATC	2 cut(s)	76, 307
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	5 cut(s)	175, 189, 327, 346, 507
Lsp1109I	GCAGC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	286, 496
MalI	GATC	2 cut(s)	78, 309
MboI	GATC	2 cut(s)	76, 307
MboII	GAAGA	2 cut(s)	33, 387
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	2 cut(s)	294, 428
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	5 cut(s)	239, 327, 330, 332, 387
MseI	TTAA	2 cut(s)	66, 411
MslI	CAYNNNNRTG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	163, 204
NdeII	GATC	2 cut(s)	76, 307
NlaIII	CATG	5 cut(s)	54, 145, 461, 485, 532
NlaIV	GGNNCC	1 cut(s)	487
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	2 cut(s)	286, 496
NspI	RCATGY	3 cut(s)	54, 145, 532
PaeI	GCATGC	2 cut(s)	54, 145
PciI	ACATGT	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	254, 268
PkrI	GCNGC	2 cut(s)	159, 200
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PscI	ACATGT	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	487
PspPI	GGNCC	3 cut(s)	351, 363, 486
RsaI	GTAC	2 cut(s)	302, 386
RsaNI	GTAC	2 cut(s)	301, 385
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	66, 411
SatI	GCNGC	2 cut(s)	158, 199
Sau3AI	GATC	2 cut(s)	76, 307
Sau96I	GGNCC	3 cut(s)	351, 363, 486
SchI	GAGTC	1 cut(s)	493
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	7 cut(s)	12, 113, 183, 243, 288, 306, 443
SfcI	CTRYAG	2 cut(s)	167, 451
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SphI	GCATGC	2 cut(s)	54, 145
Sse9I	AATT	2 cut(s)	294, 428
SsiI	CCGC	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	175, 292
TaiI	ACGT	1 cut(s)	306
TasI	AATT	2 cut(s)	294, 428
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	254, 268
Tru1I	TTAA	2 cut(s)	66, 411
Tru9I	TTAA	2 cut(s)	66, 411
TscAI	CASTG	3 cut(s)	208, 336, 501
TseFI	GTSAC	2 cut(s)	286, 496
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	2 cut(s)	286, 496
TspDTI	ATGAA	3 cut(s)	25, 103, 441
TspRI	CASTG	3 cut(s)	208, 336, 501
VpaK11BI	GGWCC	1 cut(s)	486
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	3 cut(s)	54, 145, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.