Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013468

Physical Location & Seq

Genomic Coordinates Forward (+)

5912486 .. 5914535

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10380.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCAACCTCACTAAAGAGAACATTTGGCTCAATCCTATCTTCCATTGTATACTTGTTTTACACGAACGATCACCACCACGATCAACGCTACCATCAACACCACCATCAACACCACCATCACAAAAGCAGCAGAAGCAACATCCACAAGCTCAAGTACAACATGCCTAGAGGTCGACCCCTTTCGTTGCAGACTGTGGAGCTCAAAGTCAGGATGTGCTGCACTGGTTGTGAGAGAGTTGTCAAGCATGCGATTTTCAAGCTCAAAGGGATTGATTCGGTCGAGGTGGATTTACCGATGGAAAAGGTGACAGTAGTCGGGTATGTTGAACGGAACAAGGTCCTAAAGGCGGTGAGGAGGGCCGGAAAGAGGGCAGAGTTCTGGCCGGACCATCCCTTGTACTTCACATCCACCAGTGACTATTTCAGGGACACAACCAATGAGTTTAAAGAGAGCTACAATTACTACAAGCATGGTTACAATATTGGGGACAAACACGGTACCCTTCCGGTGGCTCATCGGGGAGACGATAAAGTCAGCAACATGTTCAACGATGATAATGTCAATGCTTGCTCAATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

195

Amino Acids

22.69

Weight (kDa)

9.37

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18196 AT2G18196
fragaria_vesca	FvH4_5g10380 FvH4_5g10380
malus_domestica	MD06G1124600.v1.1 MD14G1141600.v1.1
prunus_persica	Prupe.5G135200_v2.0.a1
pyrus_communis	pycom06g11500 pycom14g11670
rosa_chinensis	RchiOBHm_Chr7g0187841
rosa_laevigata	RLG00000004752
rosa_multiflora	Rmu_sc0004483.1_g000045
rosa_roxburghii	Rroxscaffold_3G00267010
rosa_rugosa	Rorug06G0484700
rosa_samantha	Rh7BG091600 Rh7CG090700 Rh7DG092400
rosa_wichuraiana	Rw7G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
Acc65I	GGTACC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	500
AccI	GTMKAC	2 cut(s)	51, 175
AciI	CCGC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	383
AfaI	GTAC	3 cut(s)	158, 401, 502
AfiI	CCNNNNNNNGG	3 cut(s)	349, 369, 511
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	3 cut(s)	259, 329, 550
AluBI	AGCT	4 cut(s)	151, 202, 262, 456
AluI	AGCT	4 cut(s)	151, 202, 262, 456
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	519
AoxI	GGCC	2 cut(s)	360, 383
ApeKI	GCWGC	2 cut(s)	129, 219
Asp718I	GGTACC	1 cut(s)	500
AspS9I	GGNCC	3 cut(s)	340, 360, 388
AsuHPI	GGTGA	3 cut(s)	65, 319, 364
AvaII	GGWCC	2 cut(s)	340, 388
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	141, 206
BccI	CCATC	5 cut(s)	102, 114, 126, 292, 399
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	130, 220
BlsI	GCNGC	2 cut(s)	131, 221
Bme18I	GGWCC	2 cut(s)	340, 388
BmgT120I	GGNCC	3 cut(s)	340, 360, 388
BmiI	GGNNCC	1 cut(s)	502
BoxI	GACNNNNGTC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	508
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 369, 511
Bse1I	ACTGG	2 cut(s)	229, 414
BseGI	GGATG	4 cut(s)	141, 219, 391, 407
BseLI	CCNNNNNNNGG	3 cut(s)	349, 369, 511
BseNI	ACTGG	2 cut(s)	229, 414
BseRI	GAGGAG	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	141, 206
BsgI	GTGCAG	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	362, 385
BshNI	GGYRCC	1 cut(s)	500
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	3 cut(s)	363, 386, 509
BslFI	GGGAC	2 cut(s)	443, 503
BslI	CCNNNNNNNGG	3 cut(s)	349, 369, 511
BsmAI	GTCTC	1 cut(s)	519
BsmBI	CGTCTC	1 cut(s)	519
BsmFI	GGGAC	2 cut(s)	443, 503
BsnI	GGCC	2 cut(s)	362, 385
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	70, 82
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	2 cut(s)	362, 385
BspLI	GGNNCC	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	229, 414
BssMI	GATC	2 cut(s)	70, 82
BssNAI	GTATAC	1 cut(s)	52
Bst1107I	GTATAC	1 cut(s)	52
Bst4CI	ACNGT	3 cut(s)	196, 313, 500
BstC8I	GCNNGC	2 cut(s)	249, 571
BstF5I	GGATG	4 cut(s)	141, 219, 391, 407
BstKTI	GATC	2 cut(s)	73, 85
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	2 cut(s)	70, 82
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNSI	RCATGY	3 cut(s)	166, 251, 547
BstPAI	GACNNNNGTC	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	141, 206
BstZ17I	GTATAC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	362, 385
BtsCI	GGATG	4 cut(s)	141, 219, 391, 407
BtsIMutI	CAGTG	2 cut(s)	222, 421
Cac8I	GCNNGC	2 cut(s)	249, 571
Cfr13I	GGNCC	3 cut(s)	340, 360, 388
Csp6I	GTAC	3 cut(s)	157, 400, 501
CviAII	CATG	5 cut(s)	163, 248, 473, 544, 580
CviJI	RGCY	8 cut(s)	30, 151, 202, 262, 362, 385, 456, 515
CviKI_1	RGCY	8 cut(s)	30, 151, 202, 262, 362, 385, 456, 515
CviQI	GTAC	3 cut(s)	157, 400, 501
DpnI	GATC	2 cut(s)	72, 84
DpnII	GATC	2 cut(s)	70, 82
DraI	TTTAAA	1 cut(s)	448
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	1 cut(s)	383
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	340, 388
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	5 cut(s)	166, 251, 476, 547, 583
FaiI	YATR	7 cut(s)	52, 164, 249, 324, 474, 545, 581
FaqI	GGGAC	2 cut(s)	443, 503
FatI	CATG	5 cut(s)	162, 247, 472, 543, 579
FblI	GTMKAC	2 cut(s)	51, 175
Fnu4HI	GCNGC	2 cut(s)	130, 220
FokI	GGATG	4 cut(s)	128, 226, 378, 394
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	130, 220
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	2 cut(s)	130, 220
HaeIII	GGCC	2 cut(s)	362, 385
HapII	CCGG	3 cut(s)	363, 386, 509
Hin1II	CATG	5 cut(s)	166, 251, 476, 547, 583
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	3 cut(s)	363, 386, 509
HphI	GGTGA	3 cut(s)	65, 319, 364
Hpy166II	GTNNAC	2 cut(s)	52, 176
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	52, 176
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	3 cut(s)	196, 313, 500
HpyCH4V	TGCA	2 cut(s)	190, 222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
Hsp92II	CATG	5 cut(s)	166, 251, 476, 547, 583
KpnI	GGTACC	1 cut(s)	504
Kzo9I	GATC	2 cut(s)	70, 82
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	8 cut(s)	196, 210, 367, 376, 399, 412, 427, 522
Lsp1109I	GCAGC	2 cut(s)	141, 206
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	3 cut(s)	307, 416, 476
MalI	GATC	2 cut(s)	72, 84
MboI	GATC	2 cut(s)	70, 82
MboII	GAAGA	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	460
MnlI	CCTC	6 cut(s)	19, 164, 277, 348, 351, 363
MseI	TTAA	1 cut(s)	447
MspI	CCGG	3 cut(s)	363, 386, 509
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeII	GATC	2 cut(s)	70, 82
NlaIII	CATG	5 cut(s)	166, 251, 476, 547, 583
NlaIV	GGNNCC	1 cut(s)	502
NmuCI	GTSAC	2 cut(s)	307, 416
NspI	RCATGY	3 cut(s)	166, 251, 547
PaeI	GCATGC	1 cut(s)	251
PciI	ACATGT	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	131, 221
PpuMI	RGGWCCY	1 cut(s)	340
PscI	ACATGT	1 cut(s)	543
PshAI	GACNNNNGTC	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	502
PspPI	GGNCC	3 cut(s)	340, 360, 388
PspPPI	RGGWCCY	1 cut(s)	340
RsaI	GTAC	3 cut(s)	158, 401, 502
RsaNI	GTAC	3 cut(s)	157, 400, 501
SacI	GAGCTC	1 cut(s)	204
SalI	GTCGAC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	130, 220
Sau3AI	GATC	2 cut(s)	70, 82
Sau96I	GGNCC	3 cut(s)	340, 360, 388
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	9 cut(s)	11, 153, 175, 204, 264, 288, 309, 342, 458
SinI	GGWCC	2 cut(s)	340, 388
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	251
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	1 cut(s)	350
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	196, 313, 500
TaqI	TCGA	2 cut(s)	175, 282
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	1 cut(s)	460
TatI	WGTACW	2 cut(s)	156, 399
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	229, 421
TseFI	GTSAC	2 cut(s)	307, 416
TseI	GCWGC	2 cut(s)	129, 219
Tsp45I	GTSAC	2 cut(s)	307, 416
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	2 cut(s)	229, 421
VpaK11BI	GGWCC	2 cut(s)	340, 388
XceI	RCATGY	3 cut(s)	166, 251, 547
XmiI	GTMKAC	2 cut(s)	51, 175
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.