Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013468

Physical Location & Seq

Genomic Coordinates Reverse (-)

12852614 .. 12854510

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G135200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCAACGGTACTAAAGAGAACATTTGGCTCTATCATATCATCCATTGCATACTTCTCTTACCTTGACTACCCGGATCACCATTACAGAAGCAACAGCCACTTCAAGAAAATCAAATACAACATGCCAAAGAGTCGGCCCCTTTCGTTGCAGACTGTGGAGCTCAAAGTCAGGATGTGCTGCACTGGCTGTGAGAGGGTTGTCAAAAATGCCATTTTCAAGCTCAGAGGGATCGATTCGGTGGACGTAGACCTACCGATGGAAAAGGTGACGGTAATCGGGTATGTTGATCGTAACAAAATTCTCAAGGCAGTGAGGAGGGCTGGGAAGAGGGCAGAGTTCTGGCCCTACCCGAACCCTCCTTTGTACTTCACATCCTCCGGTGACTATTTCAAGGACACAATCAATGAGTTCAAAGAGAGCTACAACTACTATAGGCATGGCTACAATGTTGGGGACAAACATGGGACAATTCCAGTGACTCAAAGGGGGGATGACAAAGTTAGCAACATGTTCAATGATGATAATGTCCATGCTTGTTGCCTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

184

Amino Acids

21.22

Weight (kDa)

9.29

Isoelectric Point (pI)

25.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18196 AT2G18196
fragaria_vesca	FvH4_5g10380 FvH4_5g10380
malus_domestica	MD06G1124600.v1.1 MD14G1141600.v1.1
prunus_persica	Prupe.5G135200_v2.0.a1
pyrus_communis	pycom06g11500 pycom14g11670
rosa_chinensis	RchiOBHm_Chr7g0187841
rosa_laevigata	RLG00000004752
rosa_multiflora	Rmu_sc0004483.1_g000045
rosa_roxburghii	Rroxscaffold_3G00267010
rosa_rugosa	Rorug06G0484700
rosa_samantha	Rh7BG091600 Rh7CG090700 Rh7DG092400
rosa_wichuraiana	Rw7G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AclWI	GGATC	2 cut(s)	84, 239
AcsI	RAATTY	1 cut(s)	300
AfaI	GTAC	2 cut(s)	12, 368
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	106, 220, 394, 415, 517
AluBI	AGCT	3 cut(s)	163, 223, 423
AluI	AGCT	3 cut(s)	163, 223, 423
Alw21I	GWGCWC	1 cut(s)	165
AlwI	GGATC	2 cut(s)	84, 239
AoxI	GGCC	2 cut(s)	137, 344
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	138, 345
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	71, 280, 395
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	433
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	138, 345
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	190, 476
Bse3DI	GCAATG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	234
BseGI	GGATG	4 cut(s)	41, 180, 374, 499
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	2 cut(s)	190, 476
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	139, 346
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	74, 381
BslFI	GGGAC	2 cut(s)	470, 481
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	470, 481
BsnI	GGCC	2 cut(s)	139, 346
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	76, 231, 289
BspANI	GGCC	2 cut(s)	139, 346
BspCNI	CTCAG	1 cut(s)	237
BspDI	ATCGAT	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	84, 239
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	190, 476
BssMI	GATC	3 cut(s)	76, 231, 289
Bst4CI	ACNGT	3 cut(s)	10, 157, 274
Bst6I	CTCTTC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	4 cut(s)	41, 180, 374, 499
BstKTI	GATC	3 cut(s)	79, 234, 292
BstMBI	GATC	3 cut(s)	76, 231, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNSI	RCATGY	2 cut(s)	127, 514
BstSCI	CCNGG	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	167
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	139, 346
BsuTUI	ATCGAT	1 cut(s)	234
BtsCI	GGATG	4 cut(s)	41, 180, 374, 499
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	3 cut(s)	183, 318, 483
Cfr13I	GGNCC	2 cut(s)	138, 345
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	11, 367
CviAII	CATG	6 cut(s)	124, 440, 464, 511, 533, 547
CviQI	GTAC	2 cut(s)	11, 367
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	3 cut(s)	78, 233, 291
DpnII	GATC	3 cut(s)	76, 231, 289
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	6 cut(s)	127, 443, 467, 514, 536, 550
FaqI	GGGAC	2 cut(s)	470, 481
FatI	CATG	6 cut(s)	123, 439, 463, 510, 532, 546
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	4 cut(s)	28, 187, 361, 506
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	181
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	139, 346
HapII	CCGG	2 cut(s)	74, 381
Hin1II	CATG	6 cut(s)	127, 443, 467, 514, 536, 550
HinfI	GANTC	3 cut(s)	133, 236, 481
HpaII	CCGG	2 cut(s)	74, 381
HphI	GGTGA	3 cut(s)	71, 280, 395
Hpy166II	GTNNAC	2 cut(s)	244, 250
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	2 cut(s)	106, 172
Hpy8I	GTNNAC	2 cut(s)	244, 250
HpyCH4III	ACNGT	3 cut(s)	10, 157, 274
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	50, 151, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	6 cut(s)	127, 443, 467, 514, 536, 550
Kzo9I	GATC	3 cut(s)	76, 231, 289
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	7 cut(s)	87, 157, 171, 309, 328, 394, 489
Lsp1109I	GCAGC	1 cut(s)	167
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	4 cut(s)	268, 293, 383, 478
MalI	GATC	3 cut(s)	78, 233, 291
MboI	GATC	3 cut(s)	76, 231, 289
MboII	GAAGA	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	2 cut(s)	300, 471
MlyI	GAGTC	2 cut(s)	142, 475
MnlI	CCTC	7 cut(s)	189, 221, 309, 312, 324, 369, 388
MspI	CCGG	2 cut(s)	74, 381
MspR9I	CCNGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	3 cut(s)	76, 231, 289
NlaIII	CATG	6 cut(s)	127, 443, 467, 514, 536, 550
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	3 cut(s)	268, 383, 478
NspI	RCATGY	2 cut(s)	127, 514
PciI	ACATGT	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	2 cut(s)	141, 475
PpsI	GAGTC	2 cut(s)	141, 475
PscI	ACATGT	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	2 cut(s)	138, 345
RsaI	GTAC	2 cut(s)	12, 368
RsaNI	GTAC	2 cut(s)	11, 367
SacI	GAGCTC	1 cut(s)	165
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	3 cut(s)	76, 231, 289
Sau96I	GGNCC	2 cut(s)	138, 345
SchI	GAGTC	2 cut(s)	142, 475
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	7 cut(s)	66, 165, 225, 249, 255, 270, 425
SfcI	CTRYAG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	300, 471
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	10, 157, 274
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	300, 471
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	236
TscAI	CASTG	3 cut(s)	190, 318, 483
TseFI	GTSAC	3 cut(s)	268, 383, 478
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	3 cut(s)	268, 383, 478
TspRI	CASTG	3 cut(s)	190, 318, 483
XapI	RAATTY	1 cut(s)	300
XceI	RCATGY	2 cut(s)	127, 514
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.