AT2G18245

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014260
Physical Location & Seq
Forward (+)
7936990 .. 7939664
2675 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18245.1

Sequence Viewer

Length: 1197 bp
ATGGAAGCAACTACAAGAATCTTGAGTACTTCTTCTGCTCTCAATCGTCTTCTTCTTCTCAGTAAGCTCAATCTAAAATCAGATCCCCGTAATATCAATTCCACAAATCAGCTACTACACAATGCCGTTACCCGAAAATCCTCTATCTCCGCCGCTCGTATACGGTGCTCTTCGCTCCCTGCGAATGCGAATCTCTTCAGATCACTCTTCTTCCTAACGTCAACGTTTCGTCTCGAGAACACCGCCGTTCACGCTAATCCATTCCGATCCGAACCTAACGACGGCGTCGCCGTCTGGAACAGAGCTCCACGGATCGTGAACGGAGGTGGAAACGCGGCGATATTCGGCGGGAACGAGGGGAAAGAGACGACGGTGGTTCTCCTTGGTTGGCTAGGAGCGAAAGCTAAACATCTAAGGAGATACGTTGAGTGGTACAACTCCAGGGGAATTAACGCCGTTACTTTCACTGTTGACGTTAGGGATTTGCTCCGGTTAGATCTTGGTCGGCGGCTTGAACGAAGGATAGCTGAATTTGGGAATGAATTGGTTAATTGGGTATCGGAGAAAGAAGATGATGGTAGAGAGAAATGCTTGGTGTTTCACAGTTTCAGTAACACTGGTTGGCTTGTATATGGTGCCTTGCTAGAGAGCTTCATTGGTAGACAAGATTTAGTAGAAAGGATTAAGGGTTGTATCATTGACTCGGGAGGAGCAGATCCTCTTGATACTAAGATTTGGGCAGCGGGGTTTACCGCGGCTATACTGAAGAAGCGTAGCTCCACCATAACCACAGAACCAAACAGTCCCATAAAAGAAGAGGATGCTTCAACACCACAAAAGAAGGAACCTTTAGGAATCGAAAACATAATGCTATCATCTCTGGAGAAACTCTTCCCCATCTTCTTAAACCACCCAGACGTCAATACGAGGCTAACAAAAATCATTCAAAAACTATATGAGAACCATCCTCCATGTCCTCAGCTCTATCTTTACAGCTCCGGGGACAAAGTTGTTCCATCTCATTCCGTTGAGCTCCGCATCCGAGAACAACAGAAGATTGGAAGAAAGATACATTCTTTCAATTTCAAGTCCTCTCCTCACGTGGATCATTACCGGAACTTTCCTGACTTGTATTCCTCACAGCTTCAAAACTTCTTGCAAGAATGCTTCACACCAACAAAACAACAAGCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

398

Amino Acids

44.85

Weight (kDa)

9.48

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 123 - 386 1e-67 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18245
fragaria_vesca FvH4_1g13010
malus_domestica MD02G1144600.v1.1 MD15G1258300.v1.1
prunus_persica Prupe.7G157000_v2.0.a1 Prupe.7G157000_v2.0.a1
pyrus_communis pycom02g11450 pycom15g22610
rosa_chinensis RchiOBHm_Chr2g0101161
rosa_laevigata RLG00000017051
rosa_roxburghii Rroxscaffold_2G00141530
rosa_rugosa Rorug02G0100600
rosa_samantha Rh2AG144000 Rh2BG149000 Rh2CG150300 Rh2DG149500
rosa_wichuraiana Rw2G011290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 921
AccB1I GGYRCC 1 cut(s) 635
AccBSI CCGCTC 1 cut(s) 155
AccI GTMKAC 2 cut(s) 160, 661
AccII CGCG 2 cut(s) 335, 755
AclI AACGTT 1 cut(s) 224
AclWI GGATC 5 cut(s) 77, 261, 320, 710, 1113
AcsI RAATTY 1 cut(s) 530
AcuI CTGAAG 2 cut(s) 181, 785
AcvI CACGTG 1 cut(s) 1102
AcyI GRCGYC 2 cut(s) 285, 918
AfaI GTAC 2 cut(s) 28, 434
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 6 cut(s) 515, 828, 947, 1081, 1087, 1148
AjnI CCWGG 1 cut(s) 440
Alw21I GWGCWC 3 cut(s) 170, 307, 1035
Alw26I GTCTC 2 cut(s) 236, 359
AlwI GGATC 5 cut(s) 77, 261, 320, 710, 1113
Ama87I CYCGRG 2 cut(s) 233, 703
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 1 cut(s) 530
Asp700I GAANNNNTTC 2 cut(s) 194, 890
AsuC2I CCSGG 1 cut(s) 1000
AvaI CYCGRG 2 cut(s) 233, 703
BanI GGYRCC 1 cut(s) 635
BanII GRGCYC 2 cut(s) 307, 1035
BbrPI CACGTG 1 cut(s) 1102
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 3 cut(s) 170, 307, 1035
BbvCI CCTCAGC 1 cut(s) 978
BbvI GCAGC 1 cut(s) 752
BccI CCATC 4 cut(s) 569, 905, 972, 1024
BceAI ACGGC 5 cut(s) 110, 230, 275, 298, 440
BciT130I CCWGG 1 cut(s) 442
BcnI CCSGG 1 cut(s) 1000
BcoDI GTCTC 2 cut(s) 236, 359
BfaI CTAG 2 cut(s) 392, 644
BglII AGATCT 1 cut(s) 496
BisI GCNGC 5 cut(s) 153, 336, 509, 741, 756
BlsI GCNGC 5 cut(s) 154, 337, 510, 742, 757
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 442, 1000
BmeT110I CYCGRG 2 cut(s) 233, 703
BmiI GGNNCC 2 cut(s) 637, 846
BmrFI CCNGG 2 cut(s) 442, 1000
BmsI GCATC 2 cut(s) 811, 1047
BpiI GAAGAC 1 cut(s) 41
BpmI CTGGAG 2 cut(s) 424, 902
Bpu10I CCTNAGC 1 cut(s) 978
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 1000
BsaAI YACGTR 1 cut(s) 1102
BsaHI GRCGYC 2 cut(s) 285, 918
BsaJI CCNNGG 5 cut(s) 308, 382, 441, 753, 999
BsaWI WCCGGW 2 cut(s) 489, 1113
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 622
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 5 cut(s) 308, 382, 441, 753, 999
BseGI GGATG 3 cut(s) 826, 964, 1038
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 2 cut(s) 73, 992
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 2 cut(s) 723, 1086
BseXI GCAGC 1 cut(s) 752
Bsh1236I CGCG 2 cut(s) 335, 755
BshNI GGYRCC 1 cut(s) 635
BsiHKAI GWGCWC 3 cut(s) 170, 307, 1035
BsiHKCI CYCGRG 2 cut(s) 233, 703
BsiSI CCGG 3 cut(s) 490, 999, 1114
BslFI GGGAC 2 cut(s) 789, 1016
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 2 cut(s) 236, 359
BsmBI CGTCTC 2 cut(s) 236, 359
BsmFI GGGAC 2 cut(s) 789, 1016
BsmI GAATGC 2 cut(s) 190, 1169
BsoBI CYCGRG 2 cut(s) 233, 703
Bsp1286I GDGCHC 3 cut(s) 170, 307, 1035
Bsp143I GATC 7 cut(s) 82, 200, 266, 312, 496, 715, 1105
BspCNI CTCAG 2 cut(s) 72, 991
BspFNI CGCG 2 cut(s) 335, 755
BspLI GGNNCC 2 cut(s) 637, 846
BspPI GGATC 5 cut(s) 77, 261, 320, 710, 1113
BspQI GCTCTTC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 622
BssECI CCNNGG 5 cut(s) 308, 382, 441, 753, 999
BssMI GATC 7 cut(s) 82, 200, 266, 312, 496, 715, 1105
BssNAI GTATAC 1 cut(s) 161
BssNI GRCGYC 2 cut(s) 285, 918
BssT1I CCWWGG 1 cut(s) 382
Bst1107I GTATAC 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 5 cut(s) 165, 373, 469, 605, 803
Bst6I CTCTTC 5 cut(s) 175, 200, 212, 810, 896
BstACI GRCGYC 2 cut(s) 285, 918
BstBAI YACGTR 1 cut(s) 1102
BstDEI CTNAG 4 cut(s) 59, 413, 729, 978
BstDSI CCRYGG 2 cut(s) 308, 753
BstF5I GGATG 3 cut(s) 826, 964, 1038
BstFNI CGCG 2 cut(s) 335, 755
BstKTI GATC 7 cut(s) 85, 203, 269, 315, 499, 718, 1108
BstMAI GTCTC 2 cut(s) 236, 359
BstMBI GATC 7 cut(s) 82, 200, 266, 312, 496, 715, 1105
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 440, 998
BstUI CGCG 2 cut(s) 335, 755
BstV1I GCAGC 1 cut(s) 752
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 3 cut(s) 82, 496, 715
BstYI RGATCY 3 cut(s) 82, 496, 715
BstZ17I GTATAC 1 cut(s) 161
BtgI CCRYGG 2 cut(s) 308, 753
BtsCI GGATG 3 cut(s) 826, 964, 1038
BtsIMutI CAGTG 2 cut(s) 465, 615
Cfr42I CCGCGG 1 cut(s) 756
CseI GACGC 1 cut(s) 274
Csp6I GTAC 2 cut(s) 27, 433
CviAII CATG 1 cut(s) 972
CviQI GTAC 2 cut(s) 27, 433
DdeI CTNAG 4 cut(s) 59, 413, 729, 978
DpnI GATC 7 cut(s) 84, 202, 268, 314, 498, 717, 1107
DpnII GATC 7 cut(s) 82, 200, 266, 312, 496, 715, 1105
Eam1104I CTCTTC 5 cut(s) 175, 200, 212, 810, 896
EarI CTCTTC 5 cut(s) 175, 200, 212, 810, 896
EciI GGCGGA 1 cut(s) 139
Ecl136II GAGCTC 2 cut(s) 305, 1033
Eco130I CCWWGG 1 cut(s) 382
Eco24I GRGCYC 2 cut(s) 307, 1035
Eco53kI GAGCTC 2 cut(s) 305, 1033
Eco57I CTGAAG 2 cut(s) 181, 785
Eco72I CACGTG 1 cut(s) 1102
Eco88I CYCGRG 2 cut(s) 233, 703
EcoICRI GAGCTC 2 cut(s) 305, 1033
EcoRII CCWGG 1 cut(s) 440
EcoT14I CCWWGG 1 cut(s) 382
EcoT38I GRGCYC 2 cut(s) 307, 1035
ErhI CCWWGG 1 cut(s) 382
Esp3I CGTCTC 2 cut(s) 236, 359
FaeI CATG 1 cut(s) 975
FaqI GGGAC 2 cut(s) 789, 1016
FatI CATG 1 cut(s) 971
FauI CCCGC 2 cut(s) 341, 736
FblI GTMKAC 2 cut(s) 160, 661
Fnu4HI GCNGC 5 cut(s) 153, 336, 509, 741, 756
FokI GGATG 3 cut(s) 833, 951, 1025
FriOI GRGCYC 2 cut(s) 307, 1035
Fsp4HI GCNGC 5 cut(s) 153, 336, 509, 741, 756
FspBI CTAG 2 cut(s) 392, 644
GluI GCNGC 5 cut(s) 153, 336, 509, 741, 756
GsuI CTGGAG 2 cut(s) 424, 902
HapII CCGG 3 cut(s) 490, 999, 1114
HgaI GACGC 1 cut(s) 274
Hin1I GRCGYC 2 cut(s) 285, 918
Hin1II CATG 1 cut(s) 975
HincII GTYRAC 2 cut(s) 222, 472
HindII GTYRAC 2 cut(s) 222, 472
HinfI GANTC 4 cut(s) 18, 190, 701, 855
HpaII CCGG 3 cut(s) 490, 999, 1114
Hpy166II GTNNAC 7 cut(s) 161, 222, 250, 319, 472, 662, 750
Hpy188I TCNGA 6 cut(s) 82, 200, 266, 271, 562, 1043
Hpy188III TCNNGA 9 cut(s) 22, 233, 235, 295, 316, 705, 722, 881, 1124
Hpy8I GTNNAC 7 cut(s) 161, 222, 250, 319, 472, 662, 750
Hpy99I CGWCG 3 cut(s) 284, 290, 373
HpyAV CCTTC 2 cut(s) 513, 835
HpyCH4III ACNGT 5 cut(s) 165, 373, 469, 605, 803
HpyCH4IV ACGT 6 cut(s) 218, 224, 423, 474, 918, 1101
HpyCH4V TGCA 1 cut(s) 1159
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 4 cut(s) 59, 413, 729, 978
HpySE526I ACGT 6 cut(s) 218, 224, 423, 474, 918, 1101
Hsp92I GRCGYC 2 cut(s) 285, 918
Hsp92II CATG 1 cut(s) 975
KspI CCGCGG 1 cut(s) 756
Kzo9I GATC 7 cut(s) 82, 200, 266, 312, 496, 715, 1105
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 8 cut(s) 180, 310, 395, 492, 710, 782, 1001, 1038
Lsp1109I GCAGC 1 cut(s) 752
LweI GCATC 2 cut(s) 811, 1047
MaeI CTAG 2 cut(s) 392, 644
MaeII ACGT 6 cut(s) 218, 224, 423, 474, 918, 1101
MaeIII GTNAC 3 cut(s) 127, 457, 611
MalI GATC 7 cut(s) 84, 202, 268, 314, 498, 717, 1107
MbiI CCGCTC 1 cut(s) 155
MboI GATC 7 cut(s) 82, 200, 266, 312, 496, 715, 1105
MflI RGATCY 3 cut(s) 82, 496, 715
MhlI GDGCHC 3 cut(s) 170, 307, 1035
MluCI AATT 6 cut(s) 97, 447, 530, 542, 550, 1081
MlyI GAGTC 1 cut(s) 695
MroXI GAANNNNTTC 2 cut(s) 194, 890
MseI TTAA 4 cut(s) 450, 549, 684, 905
MspA1I CMGCKG 2 cut(s) 743, 755
MspI CCGG 3 cut(s) 490, 999, 1114
MspR9I CCNGG 2 cut(s) 442, 1000
Mva1269I GAATGC 2 cut(s) 190, 1169
MvaI CCWGG 1 cut(s) 442
MvnI CGCG 2 cut(s) 335, 755
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 1000
NdeII GATC 7 cut(s) 82, 200, 266, 312, 496, 715, 1105
NlaIII CATG 1 cut(s) 975
NlaIV GGNNCC 2 cut(s) 637, 846
PaeR7I CTCGAG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 3 cut(s) 179, 288, 351
PctI GAATGC 2 cut(s) 190, 1169
PdmI GAANNNNTTC 2 cut(s) 194, 890
PfeI GAWTC 3 cut(s) 18, 190, 855
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 5 cut(s) 154, 337, 510, 742, 757
PleI GAGTC 1 cut(s) 695
PmaCI CACGTG 1 cut(s) 1102
PmlI CACGTG 1 cut(s) 1102
PpsI GAGTC 1 cut(s) 695
Ppu21I YACGTR 1 cut(s) 1102
Psp124BI GAGCTC 2 cut(s) 307, 1035
Psp1406I AACGTT 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 440
PspCI CACGTG 1 cut(s) 1102
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 2 cut(s) 637, 846
PsuI RGATCY 3 cut(s) 82, 496, 715
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 2 cut(s) 28, 434
RsaNI GTAC 2 cut(s) 27, 433
SacI GAGCTC 2 cut(s) 307, 1035
SacII CCGCGG 1 cut(s) 756
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 4 cut(s) 450, 549, 684, 905
SatI GCNGC 5 cut(s) 153, 336, 509, 741, 756
Sau3AI GATC 7 cut(s) 82, 200, 266, 312, 496, 715, 1105
ScaI AGTACT 1 cut(s) 28
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 2 cut(s) 442, 1000
SduI GDGCHC 3 cut(s) 170, 307, 1035
SfaNI GCATC 2 cut(s) 811, 1047
Sfr274I CTCGAG 1 cut(s) 233
Sfr303I CCGCGG 1 cut(s) 756
SgrBI CCGCGG 1 cut(s) 756
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 22, 233
SmoI CTYRAG 2 cut(s) 22, 233
Sse9I AATT 6 cut(s) 97, 447, 530, 542, 550, 1081
SspMI CTAG 2 cut(s) 392, 644
SstI GAGCTC 2 cut(s) 307, 1035
StyD4I CCNGG 2 cut(s) 440, 998
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 5 cut(s) 165, 373, 469, 605, 803
TaiI ACGT 6 cut(s) 221, 227, 426, 477, 921, 1104
TaqI TCGA 2 cut(s) 234, 858
TasI AATT 6 cut(s) 97, 447, 530, 542, 550, 1081
TatI WGTACW 1 cut(s) 26
TauI GCSGC 4 cut(s) 155, 338, 511, 758
TfiI GAWTC 3 cut(s) 18, 190, 855
Tru1I TTAA 4 cut(s) 450, 549, 684, 905
Tru9I TTAA 4 cut(s) 450, 549, 684, 905
TscAI CASTG 2 cut(s) 472, 622
TseI GCWGC 1 cut(s) 740
TspDTI ATGAA 2 cut(s) 555, 643
TspGWI ACGGA 3 cut(s) 325, 336, 1015
TspRI CASTG 2 cut(s) 472, 622
Tth111I GACNNNGTC 1 cut(s) 284
XapI RAATTY 1 cut(s) 530
XhoI CTCGAG 1 cut(s) 233
XmiI GTMKAC 2 cut(s) 160, 661
XmnI GAANNNNTTC 2 cut(s) 194, 890
XspI CTAG 2 cut(s) 392, 644
ZraI GACGTC 1 cut(s) 919
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.