Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Forward (+)

7939822 .. 7941696

Gene Structure 1875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCAGCTCCGGAAGATTCAAAGATGTCTCCGGCGAATTCGTTTGGAGCTGTCGTTCTCGGCGGTACGTTTGATCGATTACACGATGGGCATCGAATGTTCCTCAAGGCGGCGGCGGAGCTGGCCAGGGATCGGATCGTAGTGGGAGTCTGTGATGGCCCAATGTTGACGAAAAAGCAATTCTCTGACATGATTCAACCCATTGAAGAAAGGATGCGTAATGTGGAGACCTATGTCAAGTCTATCAAGCCCGAGCTGGTTGTACAAGCCGAACCCATTACAGATCCATATGGCCCTTCTATCGTAGATGAAAATTTGGAAGCTATTGTTGTCAGCAAAGAGACATTACCTGGTGGCTTGTCAGTTAACAGAAAAAGAGCAGAAAGAGGTCTTTCACAGCTTAAGATTGAAGTTGTGGAAATAGTTTCTGATGGATCGAGTGGAAATAAGATAAGTTCAAGTACTCTGAGAAAAATGGAGGCTGAGAAAGCGTCTAAACAAAAACAACCAGCAGAAGAAAAAGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004595 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006140 GO:0006163 GO:0006164 GO:0006629 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010876 GO:0015936 GO:0015937 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019915 GO:0030808 GO:0031323 GO:0031326 GO:0033036 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0040007 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051179 GO:0051186 GO:0051188 GO:0051193 GO:0051196 GO:0051235 GO:0055086 GO:0062012 GO:0065007 GO:0065008 GO:0070566 GO:0071704 GO:0072521 GO:0072522 GO:0080020 GO:0080090 GO:0090407 GO:1900371 GO:1900542 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

176

Amino Acids

19.17

Weight (kDa)

6.19

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	19 - 158	1.2e-13	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	4 cut(s)	63, 110, 113, 116
AclWI	GGATC	4 cut(s)	138, 143, 278, 442
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	37, 313
AfaI	GTAC	3 cut(s)	67, 264, 463
AfiI	CCNNNNNNNGG	2 cut(s)	109, 132
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	5 cut(s)	21, 197, 206, 410, 459
AjnI	CCWGG	2 cut(s)	125, 349
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	6 cut(s)	8, 50, 121, 256, 323, 400
AluI	AGCT	6 cut(s)	8, 50, 121, 256, 323, 400
Alw26I	GTCTC	3 cut(s)	33, 221, 335
AlwI	GGATC	4 cut(s)	138, 143, 278, 442
Ama87I	CYCGRG	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	3 cut(s)	123, 157, 292
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	37, 313
AspS9I	GGNCC	2 cut(s)	158, 293
AvaI	CYCGRG	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	80, 149, 425
BciT130I	CCWGG	2 cut(s)	127, 351
BcoDI	GTCTC	3 cut(s)	33, 221, 335
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	3 cut(s)	6, 111, 114
BlsI	GCNGC	3 cut(s)	7, 112, 115
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	127, 351
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	158, 293
BmrFI	CCNGG	2 cut(s)	127, 351
BmsI	GCATC	2 cut(s)	100, 204
BoxI	GACNNNNGTC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 132
Bse8I	GATNNNNATC	1 cut(s)	90
BseAI	TCCGGA	1 cut(s)	10
BseBI	CCWGG	2 cut(s)	127, 351
BseCI	ATCGAT	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	219
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	109, 132
BseMII	CTCAG	2 cut(s)	458, 474
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	3 cut(s)	125, 159, 294
BshVI	ATCGAT	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	11, 32
BslI	CCNNNNNNNGG	2 cut(s)	109, 132
BsmAI	GTCTC	3 cut(s)	33, 221, 335
BsnI	GGCC	3 cut(s)	125, 159, 294
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	251
Bsp13I	TCCGGA	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	5 cut(s)	73, 130, 135, 283, 434
BspACI	CCGC	4 cut(s)	63, 110, 113, 116
BspANI	GGCC	3 cut(s)	125, 159, 294
BspCNI	CTCAG	2 cut(s)	459, 475
BspDI	ATCGAT	1 cut(s)	76
BspEI	TCCGGA	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	527
BspPI	GGATC	4 cut(s)	138, 143, 278, 442
BspTI	CTTAAG	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	221
BsrGI	TGTACA	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	5 cut(s)	73, 130, 135, 283, 434
Bst2UI	CCWGG	2 cut(s)	127, 351
BstAFI	CTTAAG	1 cut(s)	401
BstAUI	TGTACA	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	467, 483
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	5 cut(s)	76, 133, 138, 286, 437
BstMAI	GTCTC	3 cut(s)	33, 221, 335
BstMBI	GATC	5 cut(s)	73, 130, 135, 283, 434
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 488
BstNI	CCWGG	2 cut(s)	127, 351
BstPAI	GACNNNNGTC	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	125, 349
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
Bsu15I	ATCGAT	1 cut(s)	76
BsuRI	GGCC	3 cut(s)	125, 159, 294
BsuTUI	ATCGAT	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	123
CciI	TCATGA	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	158, 293
ClaI	ATCGAT	1 cut(s)	76
CseI	GACGC	1 cut(s)	480
CsiI	ACCWGGT	1 cut(s)	349
Csp6I	GTAC	3 cut(s)	66, 263, 462
CviAII	CATG	2 cut(s)	190, 528
CviQI	GTAC	3 cut(s)	66, 263, 462
DdeI	CTNAG	2 cut(s)	467, 483
DpnI	GATC	5 cut(s)	75, 132, 137, 285, 436
DpnII	GATC	5 cut(s)	73, 130, 135, 283, 434
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	125, 349
FaeI	CATG	2 cut(s)	193, 531
FaiI	YATR	5 cut(s)	191, 234, 289, 291, 529
FatI	CATG	2 cut(s)	189, 527
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	6, 111, 114
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	3 cut(s)	6, 111, 114
GluI	GCNGC	3 cut(s)	6, 111, 114
HaeIII	GGCC	3 cut(s)	125, 159, 294
HapII	CCGG	2 cut(s)	11, 32
HgaI	GACGC	1 cut(s)	480
Hin1II	CATG	2 cut(s)	193, 531
HincII	GTYRAC	2 cut(s)	168, 367
HindII	GTYRAC	2 cut(s)	168, 367
HinfI	GANTC	3 cut(s)	17, 147, 193
HpaI	GTTAAC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	11, 32
Hpy166II	GTNNAC	2 cut(s)	168, 367
Hpy188I	TCNGA	4 cut(s)	135, 187, 430, 468
Hpy188III	TCNNGA	2 cut(s)	11, 528
Hpy8I	GTNNAC	2 cut(s)	168, 367
HpyAV	CCTTC	1 cut(s)	306
HpyCH4IV	ACGT	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 488
HpyF3I	CTNAG	2 cut(s)	467, 483
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	193, 531
Kpn2I	TCCGGA	1 cut(s)	10
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	73, 130, 135, 283, 434
LmnI	GCTCC	3 cut(s)	13, 47, 118
LpnPI	CCDG	9 cut(s)	24, 45, 107, 112, 139, 242, 336, 363, 522
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	100, 204
MabI	ACCWGGT	1 cut(s)	349
MaeII	ACGT	1 cut(s)	68
MalI	GATC	5 cut(s)	75, 132, 137, 285, 436
MboI	GATC	5 cut(s)	73, 130, 135, 283, 434
MboII	GAAGA	3 cut(s)	26, 218, 527
MflI	RGATCY	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	3 cut(s)	37, 179, 313
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	3 cut(s)	113, 380, 472
Mox20I	TGGCCA	1 cut(s)	125
MroI	TCCGGA	1 cut(s)	10
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	2 cut(s)	366, 402
Msp20I	TGGCCA	1 cut(s)	125
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	2 cut(s)	11, 32
MspR9I	CCNGG	2 cut(s)	127, 351
MvaI	CCWGG	2 cut(s)	127, 351
MwoI	GCNNNNNNNGC	2 cut(s)	122, 488
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	5 cut(s)	73, 130, 135, 283, 434
NlaIII	CATG	2 cut(s)	193, 531
NmeAIII	GCCGAG	1 cut(s)	39
PagI	TCATGA	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	17, 193
PkrI	GCNGC	3 cut(s)	7, 112, 115
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PshAI	GACNNNNGTC	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	125, 349
PspGI	CCWGG	2 cut(s)	125, 349
PspPI	GGNCC	2 cut(s)	158, 293
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	3 cut(s)	67, 264, 463
RsaNI	GTAC	3 cut(s)	66, 263, 462
SaqAI	TTAA	2 cut(s)	366, 402
SatI	GCNGC	3 cut(s)	6, 111, 114
Sau3AI	GATC	5 cut(s)	73, 130, 135, 283, 434
Sau96I	GGNCC	2 cut(s)	158, 293
ScaI	AGTACT	1 cut(s)	463
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	2 cut(s)	127, 351
SexAI	ACCWGGT	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	100, 204
SmlI	CTYRAG	2 cut(s)	104, 401
SmoI	CTYRAG	2 cut(s)	104, 401
Sse9I	AATT	3 cut(s)	37, 179, 313
SsiI	CCGC	4 cut(s)	63, 110, 113, 116
StyD4I	CCNGG	2 cut(s)	125, 349
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	3 cut(s)	76, 94, 437
TasI	AATT	3 cut(s)	37, 179, 313
TatI	WGTACW	2 cut(s)	262, 461
TauI	GCSGC	2 cut(s)	113, 116
TfiI	GAWTC	2 cut(s)	17, 193
Tru1I	TTAA	2 cut(s)	366, 402
Tru9I	TTAA	2 cut(s)	366, 402
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	324
Vha464I	CTTAAG	1 cut(s)	401
XapI	RAATTY	2 cut(s)	37, 313
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.