Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007698.1

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Reverse (-)

21276 .. 23150

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007698.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgacgacttcggaggattcgttggtcatctccaagctgtctccggccaatacgtattcagcggtggttctcggcggcacatttgaccgattgcacgacggccaccgcctctttctcaaggcggcggcggagctcgcccgggatcgggttgtgatcggaatatgtgtcggacccatgttggcgaagaaacagtttgctgatatgattcaacccattgaggaaagaaagcataatgttgaaacttacatcaagtctatcaagccggagctggtagtgcaagttgagcctattacagacccttatggcccctcgatagttgataaagatttggatgcaattgttgtcagcaaggagactttattagggggactgtctgttaataggaagagagttgacagaggcctttcgcaacttaaggttgaagttgtagatctcgtttctgaaggaactagaggcgacaagcttagttcaacaacattaaggaagctcgaggcagcagagcaagccaagaatcaacagctttctgaaaaacctatgggaaacaagttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

183

Amino Acids

20.06

Weight (kDa)

7.81

Isoelectric Point (pI)

22.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	550
AciI	CCGC	6 cut(s)	62, 75, 106, 122, 125, 128
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	2 cut(s)	45, 100
AcuI	CTGAAG	1 cut(s)	462
AfiI	CCNNNNNNNGG	2 cut(s)	144, 145
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	209, 239, 422, 471
AluBI	AGCT	6 cut(s)	37, 133, 268, 463, 487, 520
AluI	AGCT	6 cut(s)	37, 133, 268, 463, 487, 520
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	45, 347
AlwI	GGATC	1 cut(s)	150
Ama87I	CYCGRG	2 cut(s)	138, 488
AoxI	GGCC	4 cut(s)	45, 100, 304, 400
ApeKI	GCWGC	1 cut(s)	494
AspS9I	GGNCC	2 cut(s)	170, 305
AsuC2I	CCSGG	2 cut(s)	139, 140
AvaI	CYCGRG	2 cut(s)	138, 488
AvaII	GGWCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	115
BcnI	CCSGG	2 cut(s)	139, 140
BcoDI	GTCTC	2 cut(s)	45, 347
BfaI	CTAG	1 cut(s)	450
BfrI	CTTAAG	1 cut(s)	413
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	4 cut(s)	76, 123, 126, 495
BlsI	GCNGC	4 cut(s)	77, 124, 127, 496
Bme1390I	CCNGG	2 cut(s)	139, 140
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	2 cut(s)	138, 488
BmgT120I	GGNCC	2 cut(s)	170, 305
BmiI	GGNNCC	2 cut(s)	172, 307
BmrFI	CCNGG	2 cut(s)	139, 140
BmsI	GCATC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	139, 140
BsaAI	YACGTR	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 145
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	2 cut(s)	144, 145
BseXI	GCAGC	1 cut(s)	506
BshFI	GGCC	4 cut(s)	47, 102, 306, 402
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	2 cut(s)	138, 488
BsiSI	CCGG	3 cut(s)	44, 139, 263
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	2 cut(s)	144, 145
BsmAI	GTCTC	2 cut(s)	45, 347
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	4 cut(s)	47, 102, 306, 402
BsoBI	CYCGRG	2 cut(s)	138, 488
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	142, 153, 430
BspACI	CCGC	6 cut(s)	62, 75, 106, 122, 125, 128
BspANI	GGCC	4 cut(s)	47, 102, 306, 402
BspLI	GGNNCC	2 cut(s)	172, 307
BspPI	GGATC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	142, 153, 430
Bst4CI	ACNGT	2 cut(s)	192, 372
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	135, 504
BstDEI	CTNAG	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	3 cut(s)	145, 156, 433
BstMAI	GTCTC	2 cut(s)	45, 347
BstMBI	GATC	3 cut(s)	142, 153, 430
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 274, 283, 503
BstSCI	CCNGG	2 cut(s)	137, 138
BstSNI	TACGTA	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	4 cut(s)	47, 102, 306, 402
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	135, 504
Cfr13I	GGNCC	2 cut(s)	170, 305
Cfr9I	CCCGGG	1 cut(s)	138
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	3 cut(s)	144, 155, 432
DpnII	GATC	3 cut(s)	142, 153, 430
EaeI	YGGCCR	2 cut(s)	45, 100
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	133
Eco105I	TACGTA	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	462
Eco88I	CYCGRG	2 cut(s)	138, 488
EcoICRI	GAGCTC	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	178
FaiI	YATR	7 cut(s)	163, 176, 203, 231, 303, 536, 550
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	76, 123, 126, 495
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	4 cut(s)	76, 123, 126, 495
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	4 cut(s)	76, 123, 126, 495
HaeIII	GGCC	4 cut(s)	47, 102, 306, 402
HapII	CCGG	3 cut(s)	44, 139, 263
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	3 cut(s)	17, 205, 511
HpaII	CCGG	3 cut(s)	44, 139, 263
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	5 cut(s)	13, 158, 170, 442, 526
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	2 cut(s)	192, 372
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	94, 277, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 274, 283, 503
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	142, 153, 430
LmnI	GCTCC	2 cut(s)	130, 265
LpnPI	CCDG	4 cut(s)	57, 152, 254, 276
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	53
MalI	GATC	3 cut(s)	144, 155, 432
MboI	GATC	3 cut(s)	142, 153, 430
MboII	GAAGA	2 cut(s)	196, 397
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	7 cut(s)	7, 119, 211, 319, 392, 446, 484
MseI	TTAA	3 cut(s)	378, 414, 479
MspA1I	CMGCKG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	3 cut(s)	44, 139, 263
MspR9I	CCNGG	2 cut(s)	139, 140
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	134, 274, 283, 503
NciI	CCSGG	2 cut(s)	139, 140
NdeII	GATC	3 cut(s)	142, 153, 430
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	2 cut(s)	172, 307
NmeAIII	GCCGAG	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	17, 205, 511
PkrI	GCNGC	4 cut(s)	77, 124, 127, 496
Ppu21I	YACGTR	1 cut(s)	54
PsiI	TTATAA	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	172, 307
PspPI	GGNCC	2 cut(s)	170, 305
PspXI	VCTCGAGB	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	3 cut(s)	378, 414, 479
SatI	GCNGC	4 cut(s)	76, 123, 126, 495
Sau3AI	GATC	3 cut(s)	142, 153, 430
Sau96I	GGNCC	2 cut(s)	170, 305
ScrFI	CCNGG	2 cut(s)	139, 140
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	9 cut(s)	39, 56, 135, 270, 420, 465, 489, 522, 535
SfaNI	GCATC	1 cut(s)	322
Sfr274I	CTCGAG	1 cut(s)	488
SinI	GGWCC	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	488
SmaI	CCCGGG	1 cut(s)	140
SmlI	CTYRAG	3 cut(s)	116, 413, 488
SmoI	CTYRAG	3 cut(s)	116, 413, 488
SnaBI	TACGTA	1 cut(s)	54
Sse9I	AATT	1 cut(s)	336
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	6 cut(s)	62, 75, 106, 122, 125, 128
SspMI	CTAG	1 cut(s)	450
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	137, 138
TaaI	ACNGT	2 cut(s)	192, 372
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	311, 489
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	336
TauI	GCSGC	3 cut(s)	78, 125, 128
TfiI	GAWTC	3 cut(s)	17, 205, 511
Tru1I	TTAA	3 cut(s)	378, 414, 479
Tru9I	TTAA	3 cut(s)	378, 414, 479
TseI	GCWGC	1 cut(s)	494
TspMI	CCCGGG	1 cut(s)	138
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	488
XmaI	CCCGGG	1 cut(s)	138
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.