Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Reverse (-)

40381208 .. 40381732

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG350500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCAACTTTAGAGGATTCAGTGGTTAGTTCCAAGCTCTCTCCGCCAGACACATATGGAGCCGTGGTTCTAGGTGGTACCTTTGACCGACTACACGAAGGCCATCATCTCTTTCTCAAGGCTGCAGCGGATCTCACTAGACATAGAATTGTGATTGGAATTTGTGATGGACCCATGTTGACTAACAAACAATTCGCGGATTTGATACAACCCGTTGAGGAAAGGAAGCATAATGTTGAAAATTACATCAGGTCTATCAAGCTGGGGCTGCTAGTGCAAGTTGAACCTATTATTGACCCATATGGCCCCTCAACAATAGATGAAAATTTGGAGGCAATCGTTGTCAGCAAAGAGACTTTACCTGGTGGACTGGCTGTTAATAAGAAGAGAGGTGATAGAGGCCTCTCAAAACTTAAGATTGAAGTAGTAGATTTAGTGCCTGAAGCATCTGGTGGAGATAAGATTAGTTCAACAAGATTAAGGAAGCTCGAGGCAGAGAAGGTTAAAAATCAAACACAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004595 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006140 GO:0006163 GO:0006164 GO:0006629 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010876 GO:0015936 GO:0015937 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019915 GO:0030808 GO:0031323 GO:0031326 GO:0033036 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0040007 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051179 GO:0051186 GO:0051188 GO:0051193 GO:0051196 GO:0051235 GO:0055086 GO:0062012 GO:0065007 GO:0065008 GO:0070566 GO:0071704 GO:0072521 GO:0072522 GO:0080020 GO:0080090 GO:0090407 GO:1900371 GO:1900542 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

174

Amino Acids

19.08

Weight (kDa)

6.52

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	23 - 162	2.1e-11	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AccII	CGCG	1 cut(s)	197
AciI	CCGC	3 cut(s)	44, 128, 197
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	159, 325
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	1 cut(s)	79
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	239, 284, 422, 471
AjnI	CCWGG	1 cut(s)	361
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	3 cut(s)	37, 262, 487
AluI	AGCT	3 cut(s)	37, 262, 487
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	100, 304, 400
ApeKI	GCWGC	3 cut(s)	122, 125, 268
ApoI	RAATTY	2 cut(s)	159, 325
Asp718I	GGTACC	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	170, 305
AsuHPI	GGTGA	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	109, 137, 255
BccI	CCATC	2 cut(s)	111, 161
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	3 cut(s)	71, 138, 272
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	3 cut(s)	123, 126, 269
BlsI	GCNGC	3 cut(s)	124, 127, 270
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	170, 305
BmiI	GGNNCC	4 cut(s)	61, 79, 172, 307
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse1I	ACTGG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	375
BseXI	GCAGC	3 cut(s)	109, 137, 255
BseYI	CCCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	3 cut(s)	102, 306, 402
BshNI	GGYRCC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	102, 306, 402
BsoBI	CYCGRG	1 cut(s)	488
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	3 cut(s)	44, 128, 197
BspANI	GGCC	3 cut(s)	102, 306, 402
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	4 cut(s)	61, 79, 172, 307
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	519
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	413
BstDSI	CCRYGG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 268, 274
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	3 cut(s)	109, 137, 255
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	102, 306, 402
BtgI	CCRYGG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	170, 305
CsiI	ACCWGGT	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	1 cut(s)	175
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	361
FaeI	CATG	1 cut(s)	178
FaiI	YATR	7 cut(s)	55, 57, 144, 176, 231, 301, 303
FatI	CATG	1 cut(s)	174
FauNDI	CATATG	2 cut(s)	55, 301
Fnu4HI	GCNGC	3 cut(s)	123, 126, 269
Fsp4HI	GCNGC	3 cut(s)	123, 126, 269
FspBI	CTAG	3 cut(s)	71, 138, 272
GluI	GCNGC	3 cut(s)	123, 126, 269
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	3 cut(s)	102, 306, 402
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	2 cut(s)	180, 368
Hpy188I	TCNGA	1 cut(s)	524
Hpy8I	GTNNAC	2 cut(s)	180, 368
HpyAV	CCTTC	2 cut(s)	92, 493
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4V	TGCA	2 cut(s)	125, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 268, 274
Hsp92II	CATG	1 cut(s)	178
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	8 cut(s)	60, 235, 248, 348, 356, 375, 435, 453
Lsp1109I	GCAGC	3 cut(s)	109, 137, 255
LweI	GCATC	1 cut(s)	455
MabI	ACCWGGT	1 cut(s)	361
MaeI	CTAG	3 cut(s)	71, 138, 272
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	397
MflI	RGATCY	1 cut(s)	130
MluCI	AATT	5 cut(s)	147, 159, 191, 241, 325
MnlI	CCTC	8 cut(s)	7, 211, 319, 325, 383, 392, 413, 484
MseI	TTAA	4 cut(s)	378, 414, 479, 504
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	43, 268, 274
NdeI	CATATG	2 cut(s)	55, 301
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	4 cut(s)	61, 79, 172, 307
PaeR7I	CTCGAG	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	124, 127, 270
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	4 cut(s)	61, 79, 172, 307
PspPI	GGNCC	2 cut(s)	170, 305
PspXI	VCTCGAGB	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	4 cut(s)	378, 414, 479, 504
SatI	GCNGC	3 cut(s)	123, 126, 269
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	170, 305
ScrFI	CCNGG	1 cut(s)	363
SexAI	ACCWGGT	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	455
SfcI	CTRYAG	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	488
SinI	GGWCC	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	488
SmlI	CTYRAG	3 cut(s)	116, 413, 488
SmoI	CTYRAG	3 cut(s)	116, 413, 488
Sse9I	AATT	5 cut(s)	147, 159, 191, 241, 325
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	3 cut(s)	44, 128, 197
SspMI	CTAG	3 cut(s)	71, 138, 272
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	489
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	5 cut(s)	147, 159, 191, 241, 325
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	4 cut(s)	378, 414, 479, 504
Tru9I	TTAA	4 cut(s)	378, 414, 479, 504
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	3 cut(s)	122, 125, 268
TspDTI	ATGAA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	27
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	2 cut(s)	159, 325
XhoI	CTCGAG	1 cut(s)	488
XspI	CTAG	3 cut(s)	71, 138, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.