FvH4_3g26020

Coenzyme A synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005019
Physical Location & Seq
Reverse (-)
18840903 .. 18842012
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26020.t1

Sequence Viewer

Length: 486 bp
ATGAATAGACCCTTGGAGTCTTGGACAAGTACTTCTTTTCTTACCAAGCCAAAGCATGCCAAAATGACAACTTTAGAGCATTCAGTGGTTAGTTCCAAGCTTTCTCTGCCTGATACATATGAATCAGCGGTTCTAGGTGGCACCTTTGACCGATTGCACGAAGGCCATCGTCTCTTTCTCAAGGCAGCAGCGGATCTCACAAGGCATAGAATTGTGATTGGAATCTGTGACGAACCCATGCTGACTAACAAACAATTCGCGGATTTGATACAACCCATTGAGGATAGGAAGCATACTGTTGAAAATTACATCAGGTCTATCAAGCAAGAGCTGCTAGTGCAAGTTGAACCTCTTGTTGACCTGTATGGCCCCCCAACAATTGATGAAACTCTGGAGGCAGTTGTTGTCAGCAAGGAGACTTTACCTGGTGCACTGTCTATTAATAAGAAGAGAGGTGATAGAGGCCTCTCACAAGTCACAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000149 GO:0001667 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0003006 GO:0003674 GO:0003824 GO:0004140 GO:0004595 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005759 GO:0005829 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006887 GO:0006906 GO:0006928 GO:0006950 GO:0006996 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007300 GO:0007303 GO:0007444 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009987 GO:0010631 GO:0012505 GO:0015936 GO:0015937 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016477 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019867 GO:0019953 GO:0022406 GO:0022412 GO:0022414 GO:0030154 GO:0030707 GO:0030855 GO:0031090 GO:0031201 GO:0031224 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032940 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035239 GO:0035295 GO:0040011 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046390 GO:0046483 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048468 GO:0048477 GO:0048513 GO:0048563 GO:0048569 GO:0048609 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048856 GO:0048869 GO:0048870 GO:0048878 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0055086 GO:0055088 GO:0055090 GO:0060429 GO:0060562 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070013 GO:0070328 GO:0070566 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0072522 GO:0090130 GO:0090132 GO:0090174 GO:0090407 GO:0098588 GO:0098796 GO:0098805 GO:0140056 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990143
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721
Pfam Domains
Protein Families
CTP_transf_like CoaE

Protein Analysis

162

Amino Acids

18.03

Weight (kDa)

6.59

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 44 - 109 7.2e-08 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 1 cut(s) 260
AciI CCGC 3 cut(s) 128, 191, 260
AclWI GGATC 1 cut(s) 201
AfaI GTAC 1 cut(s) 31
AgsI TTSAA 2 cut(s) 302, 347
AjnI CCWGG 1 cut(s) 424
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 100, 331
AluI AGCT 2 cut(s) 100, 331
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 2 cut(s) 176, 410
Alw44I GTGCAC 1 cut(s) 429
AlwI GGATC 1 cut(s) 201
AoxI GGCC 3 cut(s) 163, 367, 463
ApaLI GTGCAC 1 cut(s) 429
ApeKI GCWGC 3 cut(s) 185, 188, 331
AseI ATTAAT 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 433
BanI GGYRCC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 3 cut(s) 197, 200, 318
BccI CCATC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 426
BcoDI GTCTC 2 cut(s) 176, 410
BfaI CTAG 2 cut(s) 134, 335
BisI GCNGC 3 cut(s) 186, 189, 332
BlsI GCNGC 3 cut(s) 187, 190, 333
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 2 cut(s) 142, 370
BmrFI CCNGG 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 221
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 12
BseJI GATNNNNATC 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 3 cut(s) 197, 200, 318
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 3 cut(s) 165, 369, 465
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 433
BsmAI GTCTC 2 cut(s) 176, 410
BsmBI CGTCTC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 3 cut(s) 165, 369, 465
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 3 cut(s) 128, 191, 260
BspANI GGCC 3 cut(s) 165, 369, 465
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 142, 370
BspPI GGATC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 298, 435
Bst6I CTCTTC 1 cut(s) 443
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 57
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 2 cut(s) 176, 410
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 106, 331, 337
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 424
BstSLI GKGCMC 1 cut(s) 433
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 197, 200, 318
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 3 cut(s) 165, 369, 465
BtsIMutI CAGTG 2 cut(s) 90, 431
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 368
CsiI ACCWGGT 1 cut(s) 424
Csp6I GTAC 1 cut(s) 30
CviAII CATG 2 cut(s) 56, 238
CviJI RGCY 6 cut(s) 49, 100, 165, 331, 369, 465
CviKI_1 RGCY 6 cut(s) 49, 100, 165, 331, 369, 465
CviQI GTAC 1 cut(s) 30
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 2 cut(s) 59, 241
FaiI YATR 7 cut(s) 57, 118, 120, 207, 239, 294, 366
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FatI CATG 2 cut(s) 55, 237
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 186, 189, 332
Fsp4HI GCNGC 3 cut(s) 186, 189, 332
FspBI CTAG 2 cut(s) 134, 335
GluI GCNGC 3 cut(s) 186, 189, 332
GsuI CTGGAG 1 cut(s) 413
HaeIII GGCC 3 cut(s) 165, 369, 465
Hin1II CATG 2 cut(s) 59, 241
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 3 cut(s) 17, 122, 222
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 358, 431
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 2 cut(s) 358, 431
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 298, 435
HpyCH4V TGCA 3 cut(s) 157, 340, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 331, 337
Hsp92II CATG 2 cut(s) 59, 241
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 6 cut(s) 123, 298, 374, 377, 411, 438
Lsp1109I GCAGC 3 cut(s) 197, 200, 318
MabI ACCWGGT 1 cut(s) 424
MaeI CTAG 2 cut(s) 134, 335
MaeIII GTNAC 2 cut(s) 227, 475
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 460
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 4 cut(s) 210, 254, 304, 378
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 6 cut(s) 274, 360, 388, 446, 455, 476
MseI TTAA 2 cut(s) 441, 484
MspA1I CMGCKG 2 cut(s) 128, 191
MspR9I CCNGG 1 cut(s) 426
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 426
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 106, 331, 337
NdeI CATATG 1 cut(s) 118
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 59, 241
NlaIV GGNNCC 2 cut(s) 142, 370
NmuCI GTSAC 2 cut(s) 227, 475
NspI RCATGY 1 cut(s) 59
PaeI GCATGC 1 cut(s) 59
PceI AGGCCT 1 cut(s) 465
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 2 cut(s) 122, 222
PkrI GCNGC 3 cut(s) 187, 190, 333
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 142, 370
PspPI GGNCC 1 cut(s) 368
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 441, 484
SatI GCNGC 3 cut(s) 186, 189, 332
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 368
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 1 cut(s) 433
SetI ASST 9 cut(s) 102, 139, 146, 317, 333, 352, 363, 427, 457
SexAI ACCWGGT 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SphI GCATGC 1 cut(s) 59
Sse9I AATT 4 cut(s) 210, 254, 304, 378
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 3 cut(s) 128, 191, 260
SspMI CTAG 2 cut(s) 134, 335
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 298, 435
TaqII GACCGA 1 cut(s) 165
TasI AATT 4 cut(s) 210, 254, 304, 378
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 2 cut(s) 122, 222
Tru1I TTAA 2 cut(s) 441, 484
Tru9I TTAA 2 cut(s) 441, 484
TscAI CASTG 2 cut(s) 90, 438
TseFI GTSAC 2 cut(s) 227, 475
TseI GCWGC 3 cut(s) 185, 188, 331
Tsp45I GTSAC 2 cut(s) 227, 475
TspDTI ATGAA 3 cut(s) 17, 135, 399
TspRI CASTG 2 cut(s) 90, 438
VneI GTGCAC 1 cut(s) 429
VspI ATTAAT 1 cut(s) 441
XceI RCATGY 1 cut(s) 59
XspI CTAG 2 cut(s) 134, 335
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.