Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Forward (+)

7174632 .. 7176410

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13011.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCGACTTTGGAGGATTCGCTGGTCAGCTCCAAGCTCTCTCCGGCCAATACTTATGGAGCGGTGGTTCTCGGCGGCACATTTGACCGATTGCACGACGGCCACCGCCTCTTTCTCAAGGCGGCGGCGGAGCTTGCACGGGAACGGATTGTGATCGGAATTTGCGTCGGACCCATGTTGGCAAAGAAACAGTTTGCTGATATGATTCAACCCATTGAGGAAAGAAAGCATAATGTTGAAACTTACATCAAGTCTATCAAGCCGGAGCTGGTAGTGCAAGTTGAGCCTATTACGGACCCTTATGGCCCCTCAATAGTCGATAAAGATTTGGATGCAATTGTTGTCAGCAAGGAGACTTTACCAGGTGGTCTGTCTGTTAATAAGAAGAGAGTTGACAGAGGCCTTTCGCAACTGAAGGTTGAAGTTGTAGATCTCGTTTCTGAAGGTACTGGTGGAGACAAGCTTAGCTCAACAACAATAAGGAAGCTCGAGGCAGCAGAGAAGGCCAAAAATGAACAGCTTTATGATAAACCTACTGGAAACAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

184

Amino Acids

19.94

Weight (kDa)

6.85

Isoelectric Point (pI)

25.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	23 - 162	5.8e-12	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	550
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	6 cut(s)	62, 75, 106, 122, 125, 128
AcoI	YGGCCR	2 cut(s)	45, 100
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	2 cut(s)	434, 462
AfaI	GTAC	1 cut(s)	448
AgsI	TTSAA	3 cut(s)	209, 239, 422
AjnI	CCWGG	1 cut(s)	361
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	8 cut(s)	30, 37, 133, 268, 463, 468, 487, 520
AluI	AGCT	8 cut(s)	30, 37, 133, 268, 463, 468, 487, 520
Alw26I	GTCTC	2 cut(s)	347, 450
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	5 cut(s)	45, 100, 304, 400, 504
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	170, 295, 305
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	2 cut(s)	170, 295
BbvI	GCAGC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	347, 450
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	4 cut(s)	76, 123, 126, 495
BlpI	GCTNAGC	1 cut(s)	464
BlsI	GCNGC	4 cut(s)	77, 124, 127, 496
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	2 cut(s)	170, 295
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	3 cut(s)	170, 295, 305
BmiI	GGNNCC	3 cut(s)	172, 297, 307
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse1I	ACTGG	2 cut(s)	454, 541
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	337
BseJI	GATNNNNATC	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	454, 541
BseXI	GCAGC	1 cut(s)	506
BshFI	GGCC	5 cut(s)	47, 102, 306, 402, 506
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	44, 263
BsmAI	GTCTC	2 cut(s)	347, 450
BsnI	GGCC	5 cut(s)	47, 102, 306, 402, 506
BsoBI	CYCGRG	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	153, 430
Bsp1720I	GCTNAGC	1 cut(s)	464
BspACI	CCGC	6 cut(s)	62, 75, 106, 122, 125, 128
BspANI	GGCC	5 cut(s)	47, 102, 306, 402, 506
BspLI	GGNNCC	3 cut(s)	172, 297, 307
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	454, 541
BssMI	GATC	2 cut(s)	153, 430
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	2 cut(s)	156, 433
BstMAI	GTCTC	2 cut(s)	347, 450
BstMBI	GATC	2 cut(s)	153, 430
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 274, 283, 503
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	5 cut(s)	47, 102, 306, 402, 506
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	170, 295, 305
CseI	GACGC	1 cut(s)	154
CsiI	ACCWGGT	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	1 cut(s)	175
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	2 cut(s)	155, 432
DpnII	GATC	2 cut(s)	153, 430
EaeI	YGGCCR	2 cut(s)	45, 100
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	1 cut(s)	143
Eco147I	AGGCCT	1 cut(s)	402
Eco47I	GGWCC	2 cut(s)	170, 295
Eco57I	CTGAAG	2 cut(s)	434, 462
Eco88I	CYCGRG	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	361
FaeI	CATG	1 cut(s)	178
FaiI	YATR	7 cut(s)	57, 176, 203, 231, 303, 525, 550
FatI	CATG	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	76, 123, 126, 495
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	4 cut(s)	76, 123, 126, 495
GluI	GCNGC	4 cut(s)	76, 123, 126, 495
HaeIII	GGCC	5 cut(s)	47, 102, 306, 402, 506
HapII	CCGG	2 cut(s)	44, 263
HgaI	GACGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	6, 394
HindII	GTYRAC	2 cut(s)	6, 394
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	2 cut(s)	17, 205
HpaII	CCGG	2 cut(s)	44, 263
Hpy166II	GTNNAC	2 cut(s)	6, 394
Hpy188I	TCNGA	3 cut(s)	158, 170, 442
Hpy8I	GTNNAC	2 cut(s)	6, 394
Hpy99I	CGWCG	2 cut(s)	101, 170
HpyAV	CCTTC	3 cut(s)	409, 437, 496
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	94, 137, 277, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 274, 283, 503
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	153, 430
LmnI	GCTCC	4 cut(s)	35, 59, 130, 265
LpnPI	CCDG	8 cut(s)	8, 57, 254, 276, 348, 375, 435, 522
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	1 cut(s)	322
MabI	ACCWGGT	1 cut(s)	361
MalI	GATC	2 cut(s)	155, 432
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	2 cut(s)	153, 430
MboII	GAAGA	1 cut(s)	397
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	2 cut(s)	159, 336
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	6 cut(s)	7, 119, 211, 319, 392, 484
MseI	TTAA	1 cut(s)	378
MspI	CCGG	2 cut(s)	44, 263
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	4 cut(s)	134, 274, 283, 503
NdeII	GATC	2 cut(s)	153, 430
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	3 cut(s)	172, 297, 307
NmeAIII	GCCGAG	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	17, 205
PkrI	GCNGC	4 cut(s)	77, 124, 127, 496
PsiI	TTATAA	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	172, 297, 307
PspPI	GGNCC	3 cut(s)	170, 295, 305
PspXI	VCTCGAGB	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	4 cut(s)	76, 123, 126, 495
Sau3AI	GATC	2 cut(s)	153, 430
Sau96I	GGNCC	3 cut(s)	170, 295, 305
ScrFI	CCNGG	1 cut(s)	363
SexAI	ACCWGGT	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	322
Sfr274I	CTCGAG	1 cut(s)	488
SinI	GGWCC	2 cut(s)	170, 295
SlaI	CTCGAG	1 cut(s)	488
SmlI	CTYRAG	2 cut(s)	116, 488
SmoI	CTYRAG	2 cut(s)	116, 488
Sse9I	AATT	2 cut(s)	159, 336
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	6 cut(s)	62, 75, 106, 122, 125, 128
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	5, 318, 489
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	159, 336
TauI	GCSGC	3 cut(s)	78, 125, 128
TfiI	GAWTC	2 cut(s)	17, 205
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseI	GCWGC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	528
TspGWI	ACGGA	2 cut(s)	160, 308
VpaK11BI	GGWCC	2 cut(s)	170, 295
XapI	RAATTY	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.