Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Forward (+)

21952587 .. 21957271

Gene Structure 4685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1258400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGGTTTTGGAGGATTCGCTGGTGAGCTCCAAGCTCTCTCCGCCGAATACATACGGAGCCGTCGTTATCGGCGGCACTTTCGACCGATTACACAACGGTCATCGCCTGTTTCTCAAGGCGGCGGCGGAGCTGGCAAGGGATCGGATTGTGGTCGGAATTTGCGACGGACCCATGTTGGCTAACAAGCAGTTTGCTGATTTGATACAACCCATTGAGGAAAGGAGCAATAGTGTTGAGAATTACATCAAGTCTATCAAGCAGGGGCTGGTAGTGCAAGTTGAACCTATTACGGACCCCTATGGTCCCTCAATAGTCGATGAGAATTTAGAGGCAATTGTTGTCAGCAAGGAGACTTTACCGGGTGGACTGTCTGTTAATAAGAAGAGAGTTGACCGAGGTCTCTCACAGCTTAAGATTGAAGTTGTAGATCTAGTGTCTGAAGGATCTCGTGGAGATAAGCTTAGTTCAACATCATTAAGGGAGCTTGAGGCGGAGAAGGCCAAGAACCAACCACTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004595 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006140 GO:0006163 GO:0006164 GO:0006629 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010876 GO:0015936 GO:0015937 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019915 GO:0030808 GO:0031323 GO:0031326 GO:0033036 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0040007 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051179 GO:0051186 GO:0051188 GO:0051193 GO:0051196 GO:0051235 GO:0055086 GO:0062012 GO:0065007 GO:0065008 GO:0070566 GO:0071704 GO:0072521 GO:0072522 GO:0080020 GO:0080090 GO:0090407 GO:1900371 GO:1900542 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

175

Amino Acids

18.85

Weight (kDa)

5.49

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	23 - 162	3.4e-11	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	5, 44, 75, 122, 125, 128, 494
AclWI	GGATC	2 cut(s)	150, 454
AcsI	RAATTY	2 cut(s)	159, 325
AcuI	CTGAAG	1 cut(s)	462
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	284, 422, 471
AluBI	AGCT	6 cut(s)	30, 37, 133, 412, 463, 487
AluI	AGCT	6 cut(s)	30, 37, 133, 412, 463, 487
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	347, 407
AlwI	GGATC	2 cut(s)	150, 454
AlwNI	CAGNNNCTG	1 cut(s)	268
AoxI	GGCC	1 cut(s)	501
ApoI	RAATTY	2 cut(s)	159, 325
AspS9I	GGNCC	3 cut(s)	170, 295, 305
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	3 cut(s)	170, 295, 305
BanII	GRGCYC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	347, 407
BfaI	CTAG	1 cut(s)	434
BfrI	CTTAAG	1 cut(s)	413
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	3 cut(s)	76, 123, 126
BlsI	GCNGC	3 cut(s)	77, 124, 127
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	3 cut(s)	170, 295, 305
BmgT120I	GGNCC	3 cut(s)	170, 295, 305
BmiI	GGNNCC	4 cut(s)	61, 172, 297, 307
BmrFI	CCNGG	1 cut(s)	363
BoxI	GACNNNNGTC	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	101, 509
BpuMI	CCSGG	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 217, 247
BseDI	CCNNGG	1 cut(s)	397
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	503
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	347, 407
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	503
Bso31I	GGTCTC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	142, 430, 446
BspACI	CCGC	7 cut(s)	5, 44, 75, 122, 125, 128, 494
BspANI	GGCC	1 cut(s)	503
BspLI	GGNNCC	4 cut(s)	61, 172, 297, 307
BspPI	GGATC	2 cut(s)	150, 454
BspTI	CTTAAG	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	3 cut(s)	142, 430, 446
BssSI	CACGAG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	101, 372
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	464
BstKTI	GATC	3 cut(s)	145, 433, 449
BstMAI	GTCTC	2 cut(s)	347, 407
BstMBI	GATC	3 cut(s)	142, 430, 446
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 134, 274, 500
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	361
BstX2I	RGATCY	2 cut(s)	430, 446
BstYI	RGATCY	2 cut(s)	430, 446
BsuRI	GGCC	1 cut(s)	503
BtgZI	GCGATG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	170, 295, 305
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	3 cut(s)	144, 432, 448
DpnII	GATC	3 cut(s)	142, 430, 446
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	3 cut(s)	33, 143, 509
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	3 cut(s)	170, 295, 305
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	1 cut(s)	178
FaiI	YATR	4 cut(s)	55, 176, 303, 523
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	76, 123, 126
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	76, 123, 126
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	3 cut(s)	76, 123, 126
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	1 cut(s)	362
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	2 cut(s)	368, 394
Hpy188I	TCNGA	3 cut(s)	147, 158, 442
Hpy8I	GTNNAC	2 cut(s)	368, 394
Hpy99I	CGWCG	2 cut(s)	68, 170
HpyAV	CCTTC	2 cut(s)	437, 493
HpyCH4III	ACNGT	2 cut(s)	101, 372
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 134, 274, 500
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	142, 430, 446
LmnI	GCTCC	5 cut(s)	35, 59, 130, 225, 484
LpnPI	CCDG	6 cut(s)	8, 119, 122, 248, 254, 375
MaeI	CTAG	1 cut(s)	434
MalI	GATC	3 cut(s)	144, 432, 448
MboI	GATC	3 cut(s)	142, 430, 446
MboII	GAAGA	1 cut(s)	397
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	2 cut(s)	430, 446
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	4 cut(s)	159, 241, 325, 336
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	6 cut(s)	7, 211, 319, 325, 392, 484
MseI	TTAA	3 cut(s)	378, 414, 479
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	43, 134, 274, 500
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	3 cut(s)	142, 430, 446
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	4 cut(s)	61, 172, 297, 307
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 162
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	77, 124, 127
PshAI	GACNNNNGTC	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	32
PspN4I	GGNNCC	4 cut(s)	61, 172, 297, 307
PspPI	GGNCC	3 cut(s)	170, 295, 305
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	430, 446
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	378, 414, 479
SatI	GCNGC	3 cut(s)	76, 123, 126
Sau3AI	GATC	3 cut(s)	142, 430, 446
Sau96I	GGNCC	3 cut(s)	170, 295, 305
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	8 cut(s)	32, 39, 135, 289, 403, 414, 465, 489
SinI	GGWCC	3 cut(s)	170, 295, 305
SmlI	CTYRAG	3 cut(s)	116, 413, 488
SmoI	CTYRAG	3 cut(s)	116, 413, 488
Sse9I	AATT	4 cut(s)	159, 241, 325, 336
SsiI	CCGC	7 cut(s)	5, 44, 75, 122, 125, 128, 494
SspMI	CTAG	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	101, 372
TaqI	TCGA	2 cut(s)	84, 318
TaqII	GACCGA	2 cut(s)	102, 411
TasI	AATT	4 cut(s)	159, 241, 325, 336
TauI	GCSGC	3 cut(s)	78, 125, 128
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	378, 414, 479
Tru9I	TTAA	3 cut(s)	378, 414, 479
TspGWI	ACGGA	3 cut(s)	72, 183, 308
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	3 cut(s)	170, 295, 305
XapI	RAATTY	2 cut(s)	159, 325
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.