Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Reverse (-)

16536080 .. 16539224

Gene Structure 3145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G156900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGACTTTGGAGGATTCGCTGGTGAATTCCAAGCTCTCTCCGCCGAATACATATGGAGCCGTGGTTCTTGGCGGCACCTTTGACCGATTACACGATGGCCATCGCCTTTTTCTCAAGGCAGCGGCGGAGCTGGCAAGGGATCGAATTGTGGTTGGACTATGCGACGGACCCATGTTGACCAAAAAACAGTTTGCTGATTTGATACAATCCATTGAGGAAAGGAGGCATAATGTTGAAAATTACATCAAGTCTATCAAGCAGGGGCTGGCAGTGCAAGTTGAACCTATTACGGATCCCTATGGCCCCTCAATAGTTGATGAAAATTTGGAGGCAATTGTTGTCAGCAAGGAGACTTTGCCCGGTGGACTATCTGTTAATAAGAAGAGAGCGGACAGAGGCCTTTCACAACTTAAGATTGAAGTTGTAGATCTAGTTTCTGAAGCATCTAGTGGAGATAAGCTTAGTTCAACAACATTAAGGAGCCTTGAAGTGGAGAAGGTGAAGAATCAACAGCCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004595 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006140 GO:0006163 GO:0006164 GO:0006629 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010876 GO:0015936 GO:0015937 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019915 GO:0030808 GO:0031323 GO:0031326 GO:0033036 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0040007 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051179 GO:0051186 GO:0051188 GO:0051193 GO:0051196 GO:0051235 GO:0055086 GO:0062012 GO:0065007 GO:0065008 GO:0070566 GO:0071704 GO:0072521 GO:0072522 GO:0080020 GO:0080090 GO:0090407 GO:1900371 GO:1900542 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

175

Amino Acids

18.98

Weight (kDa)

5.95

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	392
AciI	CCGC	5 cut(s)	44, 75, 125, 128, 392
AclWI	GGATC	3 cut(s)	150, 290, 303
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	28, 325
AcuI	CTGAAG	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	493
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	5 cut(s)	239, 284, 422, 471, 491
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	3 cut(s)	37, 133, 463
AluI	AGCT	3 cut(s)	37, 133, 463
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	3 cut(s)	150, 290, 303
AlwNI	CAGNNNCTG	1 cut(s)	268
AoxI	GGCC	3 cut(s)	100, 304, 400
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	28, 325
AspS9I	GGNCC	2 cut(s)	170, 305
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	37, 514
AvaII	GGWCC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	2 cut(s)	92, 111
BceAI	ACGGC	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	434, 450
BfrI	CTTAAG	1 cut(s)	413
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	3 cut(s)	76, 123, 126
BlsI	GCNGC	3 cut(s)	77, 124, 127
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	170, 305
BmiI	GGNNCC	6 cut(s)	61, 79, 172, 297, 307, 485
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse118I	RCCGGY	1 cut(s)	517
Bse8I	GATNNNNATC	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	3 cut(s)	102, 306, 402
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	363, 518
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	102, 306, 402
Bsp143I	GATC	3 cut(s)	142, 295, 430
BspACI	CCGC	5 cut(s)	44, 75, 125, 128, 392
BspANI	GGCC	3 cut(s)	102, 306, 402
BspLI	GGNNCC	6 cut(s)	61, 79, 172, 297, 307, 485
BspPI	GGATC	3 cut(s)	150, 290, 303
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	142, 295, 430
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	135, 270
BstDEI	CTNAG	1 cut(s)	464
BstDSI	CCRYGG	1 cut(s)	63
BstKTI	GATC	3 cut(s)	145, 298, 433
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	3 cut(s)	142, 295, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 134, 274
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	295, 430
BstYI	RGATCY	2 cut(s)	295, 430
BsuRI	GGCC	3 cut(s)	102, 306, 402
BtgI	CCRYGG	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	135, 270
CaiI	CAGNNNCTG	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	170, 305
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	3 cut(s)	144, 297, 432
DpnII	GATC	3 cut(s)	142, 295, 430
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	2 cut(s)	33, 143
Eco147I	AGGCCT	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	28
FaeI	CATG	1 cut(s)	178
FaiI	YATR	6 cut(s)	55, 57, 163, 176, 231, 303
FatI	CATG	1 cut(s)	174
FauNDI	CATATG	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	76, 123, 126
Fsp4HI	GCNGC	3 cut(s)	76, 123, 126
FspBI	CTAG	2 cut(s)	434, 450
GluI	GCNGC	3 cut(s)	76, 123, 126
HaeIII	GGCC	3 cut(s)	102, 306, 402
HapII	CCGG	2 cut(s)	363, 518
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	2 cut(s)	17, 508
HpaII	CCGG	2 cut(s)	363, 518
HphI	GGTGA	2 cut(s)	37, 514
Hpy166II	GTNNAC	2 cut(s)	180, 368
Hpy188I	TCNGA	1 cut(s)	442
Hpy8I	GTNNAC	2 cut(s)	180, 368
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 134, 274
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	142, 295, 430
LmnI	GCTCC	3 cut(s)	59, 130, 483
LpnPI	CCDG	5 cut(s)	8, 119, 248, 254, 376
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	2 cut(s)	434, 450
MalI	GATC	3 cut(s)	144, 297, 432
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	3 cut(s)	142, 295, 430
MboII	GAAGA	2 cut(s)	397, 517
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	2 cut(s)	295, 430
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	5 cut(s)	28, 147, 241, 325, 336
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	6 cut(s)	7, 211, 219, 319, 325, 392
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	3 cut(s)	378, 414, 479
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	125
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	2 cut(s)	363, 518
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	43, 134, 274
NciI	CCSGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	3 cut(s)	142, 295, 430
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	6 cut(s)	61, 79, 172, 297, 307, 485
PceI	AGGCCT	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	17, 508
PkrI	GCNGC	3 cut(s)	77, 124, 127
PspN4I	GGNNCC	6 cut(s)	61, 79, 172, 297, 307, 485
PspPI	GGNCC	2 cut(s)	170, 305
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	295, 430
SaqAI	TTAA	3 cut(s)	378, 414, 479
SatI	GCNGC	3 cut(s)	76, 123, 126
Sau3AI	GATC	3 cut(s)	142, 295, 430
Sau96I	GGNCC	2 cut(s)	170, 305
ScrFI	CCNGG	1 cut(s)	363
SetI	ASST	6 cut(s)	39, 83, 135, 289, 465, 504
SfaNI	GCATC	1 cut(s)	455
SinI	GGWCC	1 cut(s)	170
SmlI	CTYRAG	2 cut(s)	116, 413
SmoI	CTYRAG	2 cut(s)	116, 413
Sse9I	AATT	5 cut(s)	28, 147, 241, 325, 336
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	5 cut(s)	44, 75, 125, 128, 392
SspMI	CTAG	2 cut(s)	434, 450
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	145
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	5 cut(s)	28, 147, 241, 325, 336
TauI	GCSGC	2 cut(s)	78, 128
TfiI	GAWTC	2 cut(s)	17, 508
Tru1I	TTAA	3 cut(s)	378, 414, 479
Tru9I	TTAA	3 cut(s)	378, 414, 479
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	2 cut(s)	183, 308
TspRI	CASTG	1 cut(s)	279
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	2 cut(s)	28, 325
XspI	CTAG	2 cut(s)	434, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.