Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Reverse (-)

45062317 .. 45065018

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCAACTTCAGAGGATTCAGTGGTTAGTTCCAAGCTCTCTCCGCCAGACACATATGGAGCCGTGGTTCTAGGTGGTACCTTTGACCGACTACACGAAGGCCATCATCTCTTTCTCAAGGCTGCAGCGGATCTCACTAGACATAGAATTGTGATTGGAATTTGTGATGGACCCATGTTGACTGACAAACAATTTGCGGATTTGATACAACCCATTGAGGAAAGGAAGCATAATGTTGTAAATTACATCAGGTCTATCAAGCAGGGGCTGCTAGTGCAAGTTGAACCTATTATTGACCCATATGGCCCCTTTACCTGGTGGACTGGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

110

Amino Acids

12.24

Weight (kDa)

5.88

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	23 - 84	2.7e-07	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	3 cut(s)	44, 128, 197
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	159
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	314
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
AlwI	GGATC	1 cut(s)	138
AlwNI	CAGNNNCTG	1 cut(s)	268
AoxI	GGCC	2 cut(s)	100, 304
ApeKI	GCWGC	3 cut(s)	122, 125, 268
ApoI	RAATTY	1 cut(s)	159
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
Asp718I	GGTACC	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	170, 305
AvaII	GGWCC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	109, 137, 255
BccI	CCATC	2 cut(s)	111, 161
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	316
BfaI	CTAG	3 cut(s)	71, 138, 272
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	3 cut(s)	123, 126, 269
BlsI	GCNGC	3 cut(s)	124, 127, 270
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	170, 305
BmiI	GGNNCC	4 cut(s)	61, 79, 172, 307
BmrFI	CCNGG	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	3 cut(s)	109, 137, 255
BshFI	GGCC	2 cut(s)	102, 306
BshNI	GGYRCC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	315
BsnI	GGCC	2 cut(s)	102, 306
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	3 cut(s)	44, 128, 197
BspANI	GGCC	2 cut(s)	102, 306
BspLI	GGNNCC	4 cut(s)	61, 79, 172, 307
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	63
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 268, 274
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	109, 137, 255
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	102, 306
BtgI	CCRYGG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	170, 305
CsiI	ACCWGGT	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	7 cut(s)	37, 62, 102, 122, 268, 306, 327
CviKI_1	RGCY	7 cut(s)	37, 62, 102, 122, 268, 306, 327
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	314
FaeI	CATG	1 cut(s)	178
FaiI	YATR	7 cut(s)	55, 57, 144, 176, 231, 301, 303
FatI	CATG	1 cut(s)	174
FauNDI	CATATG	2 cut(s)	55, 301
Fnu4HI	GCNGC	3 cut(s)	123, 126, 269
Fsp4HI	GCNGC	3 cut(s)	123, 126, 269
FspBI	CTAG	3 cut(s)	71, 138, 272
GluI	GCNGC	3 cut(s)	123, 126, 269
HaeIII	GGCC	2 cut(s)	102, 306
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	180, 321
Hpy188I	TCNGA	1 cut(s)	13
Hpy8I	GTNNAC	2 cut(s)	180, 321
HpyAV	CCTTC	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	125, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 268, 274
Hsp92II	CATG	1 cut(s)	178
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	6 cut(s)	60, 235, 248, 301, 309, 328
Lsp1109I	GCAGC	3 cut(s)	109, 137, 255
MabI	ACCWGGT	1 cut(s)	314
MaeI	CTAG	3 cut(s)	71, 138, 272
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MflI	RGATCY	1 cut(s)	130
MluCI	AATT	4 cut(s)	147, 159, 191, 241
MnlI	CCTC	2 cut(s)	7, 211
MseI	TTAA	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	3 cut(s)	43, 268, 274
NdeI	CATATG	2 cut(s)	55, 301
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	4 cut(s)	61, 79, 172, 307
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	124, 127, 270
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	4 cut(s)	61, 79, 172, 307
PspPI	GGNCC	2 cut(s)	170, 305
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	3 cut(s)	123, 126, 269
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	170, 305
ScrFI	CCNGG	1 cut(s)	316
SetI	ASST	6 cut(s)	39, 76, 83, 254, 289, 317
SexAI	ACCWGGT	1 cut(s)	314
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	4 cut(s)	147, 159, 191, 241
SsiI	CCGC	3 cut(s)	44, 128, 197
SspMI	CTAG	3 cut(s)	71, 138, 272
StyD4I	CCNGG	1 cut(s)	314
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	147, 159, 191, 241
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	3 cut(s)	122, 125, 268
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	159
XspI	CTAG	3 cut(s)	71, 138, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.