Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Forward (+)

11978698 .. 11981069

Gene Structure 2372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1144700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGGCTTTGGAGGATTCGCTGGTGAGCTCCAAGCTCTCTCCCCCGAATACATACGGAGCCGTCGTTCTCGGCGGCACCTTCGACCGATTACACGACGGCCATCGCCTGTTTCTCAAGGCGGCGGCGGAGCTGGCAAGGGATCGGATTGTGGTCGGAATTTGCGACGGACCCATGTTAACTAACAAGCAGTTTGCTGATCTGATACAAACCTTCGAAGAAAGGAAGCGTAGTGTTGAGAATTTCATCAAGTCTATCAAGCCGGGGCTGGTAGTGCAAGCTGAACCTATTACGGACCCGTATGGCCCCTCAATAGTTGATGAGAATCTGGAGGCAATTGTTGTCAGCAAGGAGACTTTACCAGGTGGACTGTCTGTCAATAAGAAGAGAGTTGACCGAGGCCTGTCACAACTTAAGATTGAAGTTGTAGATTTAGTTTCTGAAGAATCTGGTGGAGATAAGCTAAGTTCAACAACATTAAGGAAGCTTGAGGCGGAGAAGGCCAAGAACCAACAGCCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

175

Amino Acids

18.91

Weight (kDa)

5.78

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	23 - 162	1.3e-10	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	6 cut(s)	5, 75, 122, 125, 128, 494
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	159, 241
AcuI	CTGAAG	1 cut(s)	462
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	422, 471
AhdI	GACNNNNNGTC	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	361
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	6 cut(s)	30, 37, 133, 281, 463, 487
AluI	AGCT	6 cut(s)	30, 37, 133, 281, 463, 487
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	4 cut(s)	100, 304, 400, 501
ApoI	RAATTY	2 cut(s)	159, 241
AspS9I	GGNCC	3 cut(s)	170, 295, 305
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	37
AsuII	TTCGAA	1 cut(s)	216
AvaII	GGWCC	2 cut(s)	170, 295
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BccI	CCATC	1 cut(s)	111
BceAI	ACGGC	2 cut(s)	47, 115
BciT130I	CCWGG	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	347
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	4 cut(s)	6, 76, 123, 126
BlsI	GCNGC	4 cut(s)	7, 77, 124, 127
Bme1390I	CCNGG	2 cut(s)	264, 363
Bme18I	GGWCC	2 cut(s)	170, 295
BmeRI	GACNNNNNGTC	1 cut(s)	374
BmgT120I	GGNCC	3 cut(s)	170, 295, 305
BmiI	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
BmrFI	CCNGG	2 cut(s)	264, 363
BpmI	CTGGAG	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	101, 509
BpuMI	CCSGG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	263, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	263, 397
BseJI	GATNNNNATC	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	4 cut(s)	102, 306, 402, 503
BshNI	GGYRCC	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	4 cut(s)	102, 306, 402, 503
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	142, 199
BspACI	CCGC	6 cut(s)	5, 75, 122, 125, 128, 494
BspANI	GGCC	4 cut(s)	102, 306, 402, 503
BspLI	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
BspPI	GGATC	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	263, 397
BssMI	GATC	2 cut(s)	142, 199
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	372
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	135, 279
BstDEI	CTNAG	1 cut(s)	464
BstKTI	GATC	2 cut(s)	145, 202
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	142, 199
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 274, 500
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	2 cut(s)	262, 361
BsuRI	GGCC	4 cut(s)	102, 306, 402, 503
BtgZI	GCGATG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	135, 279
Cfr13I	GGNCC	3 cut(s)	170, 295, 305
CsiI	ACCWGGT	1 cut(s)	361
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	2 cut(s)	144, 201
DpnII	GATC	2 cut(s)	142, 199
DriI	GACNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	380
Eam1105I	GACNNNNNGTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	2 cut(s)	143, 509
Ecl136II	GAGCTC	1 cut(s)	30
Eco147I	AGGCCT	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	170, 295
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	1 cut(s)	178
FaiI	YATR	4 cut(s)	55, 176, 303, 523
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	6, 76, 123, 126
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	4 cut(s)	6, 76, 123, 126
GluI	GCNGC	4 cut(s)	6, 76, 123, 126
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	4 cut(s)	102, 306, 402, 503
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	180, 394
HindII	GTYRAC	2 cut(s)	180, 394
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	3 cut(s)	17, 325, 446
HpaI	GTTAAC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	3 cut(s)	180, 368, 394
Hpy188I	TCNGA	4 cut(s)	147, 158, 204, 442
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	3 cut(s)	180, 368, 394
Hpy99I	CGWCG	3 cut(s)	68, 101, 170
HpyAV	CCTTC	3 cut(s)	91, 223, 493
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 274, 500
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	178
KspAI	GTTAAC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	142, 199
LmnI	GCTCC	3 cut(s)	35, 59, 130
MabI	ACCWGGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	2 cut(s)	144, 201
MboI	GATC	2 cut(s)	142, 199
MboII	GAAGA	3 cut(s)	230, 397, 455
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	3 cut(s)	159, 241, 336
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	5 cut(s)	7, 319, 325, 392, 484
MseI	TTAA	3 cut(s)	179, 414, 479
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	264, 363
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	3 cut(s)	134, 274, 500
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	142, 199
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 162
PfeI	GAWTC	3 cut(s)	17, 325, 446
PkrI	GCNGC	4 cut(s)	7, 77, 124, 127
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
PspPI	GGNCC	3 cut(s)	170, 295, 305
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	179, 414, 479
SatI	GCNGC	4 cut(s)	6, 76, 123, 126
Sau3AI	GATC	2 cut(s)	142, 199
Sau96I	GGNCC	3 cut(s)	170, 295, 305
ScrFI	CCNGG	2 cut(s)	264, 363
SduI	GDGCHC	1 cut(s)	32
SexAI	ACCWGGT	1 cut(s)	361
SfuI	TTCGAA	1 cut(s)	216
SinI	GGWCC	2 cut(s)	170, 295
SmlI	CTYRAG	3 cut(s)	116, 413, 488
SmoI	CTYRAG	3 cut(s)	116, 413, 488
Sse9I	AATT	3 cut(s)	159, 241, 336
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	6 cut(s)	5, 75, 122, 125, 128, 494
SstI	GAGCTC	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	262, 361
TaaI	ACNGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	84, 216
TaqII	GACCGA	2 cut(s)	102, 411
TasI	AATT	3 cut(s)	159, 241, 336
TauI	GCSGC	4 cut(s)	8, 78, 125, 128
TfiI	GAWTC	3 cut(s)	17, 325, 446
Tru1I	TTAA	3 cut(s)	179, 414, 479
Tru9I	TTAA	3 cut(s)	179, 414, 479
TseFI	GTSAC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	3 cut(s)	72, 183, 308
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	170, 295
XapI	RAATTY	2 cut(s)	159, 241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.