Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Forward (+)

13092306 .. 13094189

Gene Structure 1884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG150400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCGACTTCGGAGGATTCGTTGGTCATCTCCAAGCTCTCTCCGGCCAATACGTATTCCGCGGTGGTTCTCGGCGGCACATTTGACCGATTGCACGACGGCCACCGCCTCTTTCTCAAGGCGGCGGTGGAGCTCGCCAGGGATCGGGTTGTGATCGGAATATGTGTCGGACCCATGTTGGCGAAGAAACAGTTTGCTGATATGATTCAACCCATTGAGGAAAGAAAGCATAATGTTGAAACTTACATCAAGTCTATCAAGCCGGAGCTGGTAGTGCAAGTTGAGCCTATTACAGACCCTTATGGCCCCTCGATAGTTGATAAAGATTTGGATGCAATTGTTGTCAGCAAGGAAACTTTATTAGGGGGACTGTCTGTTAATAGGAAGAGAGTTGACAGAGGCCTTTCGCAACTTAAGGTTGAAGTTGTAGATCTCGTTTCTGAAGGAACTAGCGGAGACAAGCTTAGTTCAACAACATTAAGGAAGCTCGAGGCAGCAGAGCAAGCCAAGAATCAACAGCTTTCTGAAAAACCTACGGGAAACAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

183

Amino Acids

19.96

Weight (kDa)

6.85

Isoelectric Point (pI)

23.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	23 - 162	5.3e-11	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	550
AccII	CGCG	1 cut(s)	62
AciI	CCGC	7 cut(s)	60, 62, 75, 106, 122, 125, 453
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	2 cut(s)	45, 100
AcuI	CTGAAG	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	209, 239, 422, 471
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	6 cut(s)	37, 133, 268, 463, 487, 520
AluI	AGCT	6 cut(s)	37, 133, 268, 463, 487, 520
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	150
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	4 cut(s)	45, 100, 304, 400
ApeKI	GCWGC	1 cut(s)	494
AspS9I	GGNCC	2 cut(s)	170, 305
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	1 cut(s)	450
BfrI	CTTAAG	1 cut(s)	413
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	3 cut(s)	76, 123, 495
BlsI	GCNGC	3 cut(s)	77, 124, 496
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	170, 305
BmiI	GGNNCC	2 cut(s)	172, 307
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	60, 138
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	60, 138
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	506
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	47, 102, 306, 402
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	44, 263
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	4 cut(s)	47, 102, 306, 402
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	142, 153, 430
BspACI	CCGC	7 cut(s)	60, 62, 75, 106, 122, 125, 453
BspANI	GGCC	4 cut(s)	47, 102, 306, 402
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	172, 307
BspPI	GGATC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	60, 138
BssMI	GATC	3 cut(s)	142, 153, 430
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	2 cut(s)	192, 372
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	135, 504
BstDEI	CTNAG	1 cut(s)	464
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	3 cut(s)	145, 156, 433
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	3 cut(s)	142, 153, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 283, 503
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSNI	TACGTA	1 cut(s)	54
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	4 cut(s)	47, 102, 306, 402
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	135, 504
Cfr13I	GGNCC	2 cut(s)	170, 305
Cfr42I	CCGCGG	1 cut(s)	63
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	3 cut(s)	144, 155, 432
DpnII	GATC	3 cut(s)	142, 153, 430
EaeI	YGGCCR	2 cut(s)	45, 100
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	133
Eco105I	TACGTA	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	178
FaiI	YATR	6 cut(s)	163, 176, 203, 231, 303, 550
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	76, 123, 495
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	76, 123, 495
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	3 cut(s)	76, 123, 495
HaeIII	GGCC	4 cut(s)	47, 102, 306, 402
HapII	CCGG	2 cut(s)	44, 263
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	3 cut(s)	17, 205, 511
HpaII	CCGG	2 cut(s)	44, 263
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	5 cut(s)	13, 158, 170, 442, 526
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	2 cut(s)	192, 372
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	94, 277, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 283, 503
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	178
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	142, 153, 430
LmnI	GCTCC	2 cut(s)	130, 265
LpnPI	CCDG	5 cut(s)	57, 124, 151, 254, 276
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	53
MalI	GATC	3 cut(s)	144, 155, 432
MboI	GATC	3 cut(s)	142, 153, 430
MboII	GAAGA	2 cut(s)	196, 397
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	6 cut(s)	7, 119, 211, 319, 392, 484
MseI	TTAA	3 cut(s)	378, 414, 479
MspA1I	CMGCKG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	2 cut(s)	44, 263
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	274, 283, 503
NdeII	GATC	3 cut(s)	142, 153, 430
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	2 cut(s)	172, 307
NmeAIII	GCCGAG	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	17, 205, 511
PkrI	GCNGC	3 cut(s)	77, 124, 496
Ppu21I	YACGTR	1 cut(s)	54
PsiI	TTATAA	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	172, 307
PspPI	GGNCC	2 cut(s)	170, 305
PspXI	VCTCGAGB	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	430
SacI	GAGCTC	1 cut(s)	135
SacII	CCGCGG	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	378, 414, 479
SatI	GCNGC	3 cut(s)	76, 123, 495
Sau3AI	GATC	3 cut(s)	142, 153, 430
Sau96I	GGNCC	2 cut(s)	170, 305
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	9 cut(s)	39, 56, 135, 270, 420, 465, 489, 522, 535
SfaNI	GCATC	1 cut(s)	322
Sfr274I	CTCGAG	1 cut(s)	488
Sfr303I	CCGCGG	1 cut(s)	63
SgrBI	CCGCGG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	488
SmlI	CTYRAG	3 cut(s)	116, 413, 488
SmoI	CTYRAG	3 cut(s)	116, 413, 488
SnaBI	TACGTA	1 cut(s)	54
Sse9I	AATT	1 cut(s)	336
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	7 cut(s)	60, 62, 75, 106, 122, 125, 453
SspMI	CTAG	1 cut(s)	450
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	192, 372
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	311, 489
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	336
TauI	GCSGC	2 cut(s)	78, 125
TfiI	GAWTC	3 cut(s)	17, 205, 511
Tru1I	TTAA	3 cut(s)	378, 414, 479
Tru9I	TTAA	3 cut(s)	378, 414, 479
TseI	GCWGC	1 cut(s)	494
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	488
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.