AT2G18465

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005875
Physical Location & Seq
Reverse (-)
8002891 .. 8004866
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18465.1

Sequence Viewer

Length: 807 bp
ATGTTTAGATTGAGAAGTCTCTTGTCGCTGAAGAGTTCTTCGATTGTAGAATTGTCATCACAAAACGTCACAGAAGCAATTCGTTTCGCTCCATTTCATTCGACAAGTGTTCTGTCTGAAAAATCGAGGAGTAGATTTGGTTCTGCTAGAGATTCCGAAGGCGAACGATCTTCAAAGAACTCCTCCATAAGATTTACATGTACCGTAAAGGAGAAGGGTCGTACCAGTGCTAAGAAGACTGTGGATAAACTCCTTTTCCACAGGGGAATTAATGATCCGCTTCAGAATGAGTGGCATTTCGGGCCAAGTCCGCTTATCCGGGATAGGCATATGAAGAAAAAATCTCCGCCTGGCAGGGGAAAGAAGCCTCGAGATAAGAAAACAAAACGATGGCACAGAGAAGGTAATCCGGACGATGATTTTGGCACTGATGCTAATAATACATTCGAGAACAAATGGAGAGAACGCTGGACAGCTCAATCTCAGAAGGCTTCATATTCGAAAGACTCGACAGCGGGATTTGAATGGAGAGAAGGCTGGAGCTGGACCACTCAATCTCAGAGGAGCAAAAGTTGGAATAAAGAGTCTTTTGATGAACCTTTGAACGTTGAGTTTAGGTCTGAGAGGATTGTTCTAGGATTGCCTCTTGATGGTCCCATCAAGGTTGATGATGTTAAGAATGCCTTCCGATCTTCTGCGTTGAAGTGGCATCCAGATAAGCACCAGGGGCCTTCTCAGGTGGCAGCGCAAGAGAAATTCAAACTCTGTGTTGATGCATACAAGTCCCTCTGTTCTGCACTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

268

Amino Acids

30.73

Weight (kDa)

9.95

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 220 - 264 2.5e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 409
AciI CCGC 4 cut(s) 278, 311, 347, 515
AclI AACGTT 1 cut(s) 606
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 2 cut(s) 50, 266
AfaI GTAC 2 cut(s) 202, 223
AfiI CCNNNNNNNGG 2 cut(s) 356, 650
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 5 cut(s) 174, 524, 604, 703, 760
AjnI CCWGG 2 cut(s) 349, 723
AluBI AGCT 2 cut(s) 476, 543
AluI AGCT 2 cut(s) 476, 543
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 369
Aor13HI TCCGGA 1 cut(s) 409
AoxI GGCC 2 cut(s) 302, 728
ApeKI GCWGC 1 cut(s) 743
ApoI RAATTY 1 cut(s) 755
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 2 cut(s) 78, 683
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 4 cut(s) 302, 546, 653, 728
AsuC2I CCSGG 1 cut(s) 320
AsuII TTCGAA 1 cut(s) 500
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 2 cut(s) 546, 653
BbsI GAAGAC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 755
BccI CCATC 3 cut(s) 384, 644, 665
BciT130I CCWGG 2 cut(s) 351, 725
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 147, 635
BisI GCNGC 1 cut(s) 744
BlsI GCNGC 1 cut(s) 745
Bme1390I CCNGG 3 cut(s) 320, 351, 725
Bme18I GGWCC 2 cut(s) 546, 653
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 4 cut(s) 302, 546, 653, 728
BmiI GGNNCC 2 cut(s) 655, 729
BmrFI CCNGG 3 cut(s) 320, 351, 725
BmsI GCATC 3 cut(s) 421, 718, 763
BpiI GAAGAC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 559
Bpu14I TTCGAA 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 724
BsaWI WCCGGW 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 650
Bse1I ACTGG 1 cut(s) 225
BseAI TCCGGA 1 cut(s) 409
BseBI CCWGG 2 cut(s) 351, 725
BseDI CCNNGG 1 cut(s) 724
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 2 cut(s) 356, 650
BseMII CTCAG 4 cut(s) 497, 572, 612, 749
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 3 cut(s) 142, 172, 577
BseXI GCAGC 1 cut(s) 755
BsgI GTGCAG 1 cut(s) 780
BshFI GGCC 2 cut(s) 304, 730
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 2 cut(s) 319, 410
BslFI GGGAC 2 cut(s) 639, 769
BslI CCNNNNNNNGG 2 cut(s) 356, 650
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 2 cut(s) 639, 769
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 2 cut(s) 304, 730
BsoBI CYCGRG 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 500
Bsp13I TCCGGA 1 cut(s) 409
Bsp143I GATC 3 cut(s) 167, 274, 689
BspACI CCGC 4 cut(s) 278, 311, 347, 515
BspANI GGCC 2 cut(s) 304, 730
BspCNI CTCAG 4 cut(s) 496, 571, 613, 748
BspEI TCCGGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 655, 729
BspPI GGATC 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 500
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 3 cut(s) 167, 274, 689
Bst2UI CCWGG 2 cut(s) 351, 725
Bst4CI ACNGT 2 cut(s) 205, 241
Bst6I CTCTTC 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 500
BstDEI CTNAG 5 cut(s) 231, 483, 558, 621, 735
BstF5I GGATG 1 cut(s) 709
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 3 cut(s) 170, 277, 692
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 3 cut(s) 167, 274, 689
BstMWI GCNNNNNNNGC 3 cut(s) 301, 310, 727
BstNI CCWGG 2 cut(s) 351, 725
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 3 cut(s) 318, 349, 723
BstV1I GCAGC 1 cut(s) 755
BstV2I GAAGAC 1 cut(s) 242
BsuRI GGCC 2 cut(s) 304, 730
BtsCI GGATG 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 232, 426
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 4 cut(s) 302, 546, 653, 728
Csp6I GTAC 2 cut(s) 201, 222
CviAII CATG 1 cut(s) 198
CviJI RGCY 7 cut(s) 304, 367, 476, 491, 537, 543, 730
CviKI_1 RGCY 7 cut(s) 304, 367, 476, 491, 537, 543, 730
CviQI GTAC 2 cut(s) 201, 222
DdeI CTNAG 5 cut(s) 231, 483, 558, 621, 735
DpnI GATC 3 cut(s) 169, 276, 691
DpnII GATC 3 cut(s) 167, 274, 689
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EciI GGCGGA 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 546, 653
Eco57I CTGAAG 2 cut(s) 50, 266
Eco88I CYCGRG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 728
EcoRII CCWGG 2 cut(s) 349, 723
EcoT22I ATGCAT 1 cut(s) 778
FaeI CATG 1 cut(s) 201
FaiI YATR 6 cut(s) 188, 199, 330, 332, 496, 778
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FaqI GGGAC 2 cut(s) 639, 769
FatI CATG 1 cut(s) 197
FauI CCCGC 1 cut(s) 508
FauNDI CATATG 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 744
FokI GGATG 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 744
FspBI CTAG 2 cut(s) 147, 635
GlaI GCGC 1 cut(s) 747
GluI GCNGC 1 cut(s) 744
GsuI CTGGAG 1 cut(s) 559
HaeIII GGCC 2 cut(s) 304, 730
HapII CCGG 2 cut(s) 319, 410
HhaI GCGC 1 cut(s) 748
Hin1II CATG 1 cut(s) 201
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HinfI GANTC 3 cut(s) 152, 506, 584
HpaII CCGG 2 cut(s) 319, 410
Hpy188I TCNGA 7 cut(s) 118, 157, 285, 486, 561, 622, 689
Hpy188III TCNNGA 5 cut(s) 371, 410, 448, 647, 713
HpyAV CCTTC 7 cut(s) 152, 208, 395, 481, 527, 694, 741
HpyCH4III ACNGT 2 cut(s) 205, 241
HpyCH4IV ACGT 2 cut(s) 66, 606
HpyCH4V TGCA 2 cut(s) 776, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 310, 727
HpyF3I CTNAG 5 cut(s) 231, 483, 558, 621, 735
HpySE526I ACGT 2 cut(s) 66, 606
Hsp92II CATG 1 cut(s) 201
HspAI GCGC 1 cut(s) 746
Kpn2I TCCGGA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 167, 274, 689
LmnI GCTCC 3 cut(s) 94, 540, 564
Lsp1109I GCAGC 1 cut(s) 755
LweI GCATC 3 cut(s) 421, 718, 763
MaeI CTAG 2 cut(s) 147, 635
MaeII ACGT 2 cut(s) 66, 606
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 169, 276, 691
MboI GATC 3 cut(s) 167, 274, 689
MboII GAAGA 6 cut(s) 30, 43, 162, 247, 346, 684
MluCI AATT 4 cut(s) 50, 78, 267, 755
MlyI GAGTC 2 cut(s) 500, 593
MmeI TCCRAC 1 cut(s) 554
MnlI CCTC 7 cut(s) 120, 193, 378, 555, 618, 654, 797
Mph1103I ATGCAT 1 cut(s) 778
MroI TCCGGA 1 cut(s) 409
MroXI GAANNNNTTC 2 cut(s) 78, 683
MseI TTAA 2 cut(s) 270, 675
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 2 cut(s) 319, 410
MspR9I CCNGG 3 cut(s) 320, 351, 725
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 2 cut(s) 351, 725
MwoI GCNNNNNNNGC 3 cut(s) 301, 310, 727
NciI CCSGG 1 cut(s) 320
NdeI CATATG 1 cut(s) 330
NdeII GATC 3 cut(s) 167, 274, 689
NlaIII CATG 1 cut(s) 201
NlaIV GGNNCC 2 cut(s) 655, 729
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 778
NspI RCATGY 1 cut(s) 201
NspV TTCGAA 1 cut(s) 500
PaeR7I CTCGAG 1 cut(s) 369
PciI ACATGT 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 506
PctI GAATGC 1 cut(s) 685
PdmI GAANNNNTTC 2 cut(s) 78, 683
PfeI GAWTC 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 1 cut(s) 745
PleI GAGTC 2 cut(s) 500, 592
PpsI GAGTC 2 cut(s) 500, 592
PscI ACATGT 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 270
Psp1406I AACGTT 1 cut(s) 606
Psp6I CCWGG 2 cut(s) 349, 723
PspGI CCWGG 2 cut(s) 349, 723
PspN4I GGNNCC 2 cut(s) 655, 729
PspPI GGNCC 4 cut(s) 302, 546, 653, 728
PsrI GAACNNNNNNTAC 2 cut(s) 124, 156
RsaI GTAC 2 cut(s) 202, 223
RsaNI GTAC 2 cut(s) 201, 222
SaqAI TTAA 2 cut(s) 270, 675
SatI GCNGC 1 cut(s) 744
Sau3AI GATC 3 cut(s) 167, 274, 689
Sau96I GGNCC 4 cut(s) 302, 546, 653, 728
SchI GAGTC 2 cut(s) 500, 593
ScrFI CCNGG 3 cut(s) 320, 351, 725
SetI ASST 9 cut(s) 69, 406, 478, 545, 601, 609, 620, 666, 741
SfaNI GCATC 3 cut(s) 421, 718, 763
Sfr274I CTCGAG 1 cut(s) 369
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 2 cut(s) 546, 653
SlaI CTCGAG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 4 cut(s) 50, 78, 267, 755
SsiI CCGC 4 cut(s) 278, 311, 347, 515
SspMI CTAG 2 cut(s) 147, 635
StyD4I CCNGG 3 cut(s) 318, 349, 723
TaaI ACNGT 2 cut(s) 205, 241
TaiI ACGT 2 cut(s) 69, 609
TaqI TCGA 7 cut(s) 41, 101, 125, 370, 447, 500, 509
TasI AATT 4 cut(s) 50, 78, 267, 755
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 270, 675
Tru9I TTAA 2 cut(s) 270, 675
TscAI CASTG 2 cut(s) 232, 433
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 743
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 86, 347, 483, 609
TspRI CASTG 2 cut(s) 232, 433
VpaK11BI GGWCC 2 cut(s) 546, 653
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 1 cut(s) 755
XceI RCATGY 1 cut(s) 201
XhoI CTCGAG 1 cut(s) 369
XmnI GAANNNNTTC 2 cut(s) 78, 683
XspI CTAG 2 cut(s) 147, 635
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.