Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005875

Physical Location & Seq

Genomic Coordinates Reverse (-)

36484905 .. 36492802

Gene Structure 7898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG303800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCAAGTACCCAGATGGAGAAACGTCTTGATACTCAGGAATTCATTGATTTCGATGACTTGTACGCCAACCCATTTAGCGTCATTTCATTCTACTCCAGCTTCATGTGAGAAGTGGAAGGACAAATGGAACTTTGATGTGAAGAGTTCAGAACAACCATCAAAGAATTTCATCAGATATGCAACACGTCACAAGCGAGCTGATGCAAAGAAAGCCCTTAAAAATCTTCTCTTCAACAGCGGATACTCCCCTAAACTCTCATATCAGCACATTCAGGAAGAAGATGATTCAGGTAGCTCTCCTAAAAATCATAGATCAAAATCTTGTCGACATGCTCAGAAATCCCACCACAAGAAAATGAAACGCAAACTCAAACGAGAGAGTTTCTCTGATGATGAAAACCATCCTGAGACAATCTTTCAGGCAACATATGGCAAGAGATGGTACACTTGGTCTTTTAACGCACAGCGCGACTCTTTTCATGATTCAGCATCTGGATTTGATTGGAGAGAGCCTTCAAGCTGGAAAGATAGAAGTACAAGATGGGAAAACATTAGTGATGTAGAGTCTGATGATGAACAATGTACCATAGGATCATGTTCTGATAGAAAAATTCTTGGTCTCCCTTCAACAGGTCCTTTAAAGACCGAAGATGTTAAAAAAGCTTTCCATTTATCAGCTTTAAAATGGCATCCTGACAAGCATCAAGGATCTTCACAGGTCAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

243

Amino Acids

28.24

Weight (kDa)

9.55

Isoelectric Point (pI)

63.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18465
fragaria_vesca	FvH4_1g23620 FvH4_1g23620
malus_domestica	MD01G1016700.v1.1
prunus_persica	Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1
pyrus_communis	pycom01g02810
rosa_chinensis	RchiOBHm_Chr2g0119201
rosa_laevigata	RLG00000018451
rosa_multiflora	Rmu_sc0000184.1_g000010
rosa_roxburghii	Rroxscaffold_2G00124450
rosa_rugosa	Rorug02G0220900
rosa_samantha	Rh2AG278800 Rh2BG289700 Rh2DG284800 Rh2DG303800
rosa_wichuraiana	Rw2G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	328
AccII	CGCG	1 cut(s)	471
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	2 cut(s)	601, 718
AcsI	RAATTY	3 cut(s)	40, 166, 612
AfaI	GTAC	5 cut(s)	9, 64, 446, 538, 586
AfiI	CCNNNNNNNGG	1 cut(s)	632
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	235, 519, 630
AjiI	CACGTC	1 cut(s)	188
AluBI	AGCT	6 cut(s)	101, 200, 297, 522, 665, 680
AluI	AGCT	6 cut(s)	101, 200, 297, 522, 665, 680
Alw26I	GTCTC	2 cut(s)	404, 626
AlwI	GGATC	2 cut(s)	601, 718
AlwNI	CAGNNNCTG	1 cut(s)	494
ApoI	RAATTY	3 cut(s)	40, 166, 612
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	635
BccI	CCATC	5 cut(s)	9, 166, 411, 435, 537
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	404, 626
BfuI	GTATCC	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	635
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	635
BmsI	GCATC	4 cut(s)	193, 500, 700, 712
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	626
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse8I	GATNNNNATC	1 cut(s)	319
BseGI	GGATG	2 cut(s)	403, 691
BseJI	GATNNNNATC	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMII	CTCAG	3 cut(s)	49, 350, 399
Bsh1236I	CGCG	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	2 cut(s)	404, 626
Bso31I	GGTCTC	1 cut(s)	626
Bsp143I	GATC	3 cut(s)	314, 593, 710
BspACI	CCGC	1 cut(s)	240
BspCNI	CTCAG	3 cut(s)	48, 349, 400
BspFNI	CGCG	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	481
BspPI	GGATC	2 cut(s)	601, 718
BspTNI	GGTCTC	1 cut(s)	626
BssMI	GATC	3 cut(s)	314, 593, 710
Bst6I	CTCTTC	2 cut(s)	137, 236
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	35, 336, 408
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	2 cut(s)	403, 691
BstFNI	CGCG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	3 cut(s)	317, 596, 713
BstMAI	GTCTC	2 cut(s)	404, 626
BstMBI	GATC	3 cut(s)	314, 593, 710
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	335
BstUI	CGCG	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	710
BsuI	GTATCC	1 cut(s)	236
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	403, 691
Cac8I	GCNNGC	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	494
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	635
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	5 cut(s)	8, 63, 445, 537, 585
CviAII	CATG	4 cut(s)	105, 332, 482, 597
CviJI	RGCY	8 cut(s)	101, 200, 215, 297, 514, 522, 665, 680
CviKI_1	RGCY	8 cut(s)	101, 200, 215, 297, 514, 522, 665, 680
CviQI	GTAC	5 cut(s)	8, 63, 445, 537, 585
DdeI	CTNAG	3 cut(s)	35, 336, 408
DpnI	GATC	3 cut(s)	316, 595, 712
DpnII	GATC	3 cut(s)	314, 593, 710
DraI	TTTAAA	2 cut(s)	642, 684
Eam1104I	CTCTTC	2 cut(s)	137, 236
EarI	CTCTTC	2 cut(s)	137, 236
Eco31I	GGTCTC	1 cut(s)	626
Eco47I	GGWCC	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	40
FaeI	CATG	4 cut(s)	108, 335, 485, 600
FatI	CATG	4 cut(s)	104, 331, 481, 596
FauNDI	CATATG	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	328
FokI	GGATG	2 cut(s)	390, 678
GlaI	GCGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	108, 335, 485, 600
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	663
HinfI	GANTC	4 cut(s)	287, 473, 485, 566
Hpy166II	GTNNAC	2 cut(s)	329, 447
Hpy188I	TCNGA	6 cut(s)	151, 176, 339, 391, 571, 604
Hpy188III	TCNNGA	8 cut(s)	28, 37, 275, 407, 482, 495, 695, 729
Hpy8I	GTNNAC	2 cut(s)	329, 447
HpyAV	CCTTC	3 cut(s)	112, 525, 636
HpyCH4IV	ACGT	2 cut(s)	24, 187
HpyCH4V	TGCA	3 cut(s)	4, 182, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	35, 336, 408
HpySE526I	ACGT	2 cut(s)	24, 187
Hsp92II	CATG	4 cut(s)	108, 335, 485, 600
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	314, 593, 710
LweI	GCATC	4 cut(s)	193, 500, 700, 712
MaeII	ACGT	2 cut(s)	24, 187
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	3 cut(s)	316, 595, 712
MboI	GATC	3 cut(s)	314, 593, 710
MboII	GAAGA	7 cut(s)	154, 218, 223, 290, 293, 662, 705
MflI	RGATCY	1 cut(s)	710
MluCI	AATT	3 cut(s)	40, 166, 612
MlyI	GAGTC	2 cut(s)	467, 575
MseI	TTAA	5 cut(s)	219, 459, 641, 657, 683
MspA1I	CMGCKG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	3 cut(s)	314, 593, 710
NlaIII	CATG	4 cut(s)	108, 335, 485, 600
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	335
PagI	TCATGA	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 468
PfeI	GAWTC	2 cut(s)	287, 485
PleI	GAGTC	2 cut(s)	467, 574
PpsI	GAGTC	2 cut(s)	467, 574
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
PspPI	GGNCC	1 cut(s)	635
PspPPI	RGGWCCY	1 cut(s)	635
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	710
RsaI	GTAC	5 cut(s)	9, 64, 446, 538, 586
RsaNI	GTAC	5 cut(s)	8, 63, 445, 537, 585
SalI	GTCGAC	1 cut(s)	327
SaqAI	TTAA	5 cut(s)	219, 459, 641, 657, 683
Sau3AI	GATC	3 cut(s)	314, 593, 710
Sau96I	GGNCC	1 cut(s)	635
SchI	GAGTC	2 cut(s)	467, 575
SfaNI	GCATC	4 cut(s)	193, 500, 700, 712
SinI	GGWCC	1 cut(s)	635
Sse9I	AATT	3 cut(s)	40, 166, 612
SsiI	CCGC	1 cut(s)	240
TaiI	ACGT	2 cut(s)	27, 190
TaqI	TCGA	2 cut(s)	53, 328
TaqII	GACCGA	1 cut(s)	662
TasI	AATT	3 cut(s)	40, 166, 612
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	2 cut(s)	287, 485
Tru1I	TTAA	5 cut(s)	219, 459, 641, 657, 683
Tru9I	TTAA	5 cut(s)	219, 459, 641, 657, 683
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	8 cut(s)	33, 77, 93, 160, 374, 411, 470, 591
VpaK11BI	GGWCC	1 cut(s)	635
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	3 cut(s)	40, 166, 612
XceI	RCATGY	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.