Rw2G022160

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005875
Physical Location & Seq
Reverse (-)
30979785 .. 30986166
6382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G022160.1

Sequence Viewer

Length: 834 bp
ATGTTCTTGTCACAACAAAAAGTAGATTCCCCTCCACAAATGCAAGTACCCAGATGGAGAAACGTCTTGATACTCAGGAATTCATTGATTTCGATGACTTGTACACCAACCCATTTAGCGTCATTTCATTCTACTCCAGCTTCATGTGAGAAGTGGAAGGACAAATGGAACTTTGATGTGAAGAGTTCAGAACAACCATCAAAGAATTTCGTCAGATATGCAACACGTCACAAGCGAGCTGATGCAAAGAAAGCCCTTAAAAATCTTCTCTTCAACAGCGGATACTCCCCTAAACTCTCATATCAGCACATTCAGGAAGAAGATGATTCAGGTAGCTCTCCTAAAAATCATAGATCAAAATCTTGTCGACATGCTCAGAAATCCCACCACAAGAAAATGAAACGCAAGCTCAAACGAGAGAGTTTCTCTGATGATGAAAACCATCCTGAGACAATCTTTCAGGCAACATATGGCAAGAGATGGTACACTTGGTCTTTTAACGCACAGCGCGACTCTTTTCATGATTCAGCATCTGGATTTGATTGGAGAGAGCCTTCAAGCTGGAAAGATAGAAGTACAAGATGGGAAAACATTAGTGATGTAGAGTCTGATGATGAACAATGCACCATAGGATCATGTTCCGATAGAAAAATTCTTCGTCTCCCTTCAACAGGTCCTTTAAAGACCGAAGATGTTAAAAAAGCTTTCCATTTATCAGCTTTAAAATGGCATCCTGACAAGCATCAAGGATCTTCACAGGAAATGGCAGCAGAGAAATTTAGACTTTGTGTTAATGCTTACAATTCTCTGTGCAATGCATTATCTGCAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

277

Amino Acids

32.14

Weight (kDa)

9.47

Isoelectric Point (pI)

62.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 218 - 272 5.8e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 367
AccII CGCG 1 cut(s) 510
AciI CCGC 1 cut(s) 279
AclWI GGATC 2 cut(s) 640, 757
AcsI RAATTY 4 cut(s) 79, 205, 651, 776
AfaI GTAC 4 cut(s) 48, 103, 485, 577
AfiI CCNNNNNNNGG 1 cut(s) 671
AflIII ACRYGT 1 cut(s) 224
AgsI TTSAA 3 cut(s) 274, 558, 669
AjiI CACGTC 1 cut(s) 227
AluBI AGCT 7 cut(s) 140, 239, 336, 409, 561, 704, 719
AluI AGCT 7 cut(s) 140, 239, 336, 409, 561, 704, 719
Alw26I GTCTC 2 cut(s) 443, 665
AlwI GGATC 2 cut(s) 640, 757
AlwNI CAGNNNCTG 1 cut(s) 533
ApeKI GCWGC 1 cut(s) 767
ApoI RAATTY 4 cut(s) 79, 205, 651, 776
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 1 cut(s) 674
AvaII GGWCC 1 cut(s) 674
BbvI GCAGC 1 cut(s) 779
BccI CCATC 5 cut(s) 48, 205, 450, 474, 576
BciVI GTATCC 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 443, 665
BfuI GTATCC 1 cut(s) 275
BisI GCNGC 1 cut(s) 768
BlsI GCNGC 1 cut(s) 769
Bme18I GGWCC 1 cut(s) 674
BmgBI CACGTC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 674
BmsI GCATC 4 cut(s) 232, 539, 739, 751
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 358
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse3DI GCAATG 1 cut(s) 820
Bse8I GATNNNNATC 1 cut(s) 358
BseGI GGATG 2 cut(s) 442, 730
BseJI GATNNNNATC 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMI GCAATG 1 cut(s) 820
BseMII CTCAG 3 cut(s) 88, 389, 438
BseXI GCAGC 1 cut(s) 779
Bsh1236I CGCG 1 cut(s) 510
BslI CCNNNNNNNGG 1 cut(s) 671
BsmAI GTCTC 2 cut(s) 443, 665
BsmBI CGTCTC 1 cut(s) 665
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 3 cut(s) 353, 632, 749
BspACI CCGC 1 cut(s) 279
BspCNI CTCAG 3 cut(s) 87, 388, 439
BspFNI CGCG 1 cut(s) 510
BspHI TCATGA 1 cut(s) 520
BspPI GGATC 2 cut(s) 640, 757
BsrDI GCAATG 1 cut(s) 820
BsrGI TGTACA 1 cut(s) 101
BssMI GATC 3 cut(s) 353, 632, 749
Bst6I CTCTTC 2 cut(s) 176, 275
BstAPI GCANNNNNTGC 1 cut(s) 824
BstAUI TGTACA 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 237, 407
BstDEI CTNAG 3 cut(s) 74, 375, 447
BstENI CCTNNNNNAGG 1 cut(s) 669
BstF5I GGATG 2 cut(s) 442, 730
BstFNI CGCG 1 cut(s) 510
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 3 cut(s) 356, 635, 752
BstMAI GTCTC 2 cut(s) 443, 665
BstMBI GATC 3 cut(s) 353, 632, 749
BstMWI GCNNNNNNNGC 2 cut(s) 251, 824
BstNSI RCATGY 1 cut(s) 374
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 1 cut(s) 779
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuI GTATCC 1 cut(s) 275
BtrI CACGTC 1 cut(s) 227
BtsCI GGATG 2 cut(s) 442, 730
Cac8I GCNNGC 2 cut(s) 237, 407
CaiI CAGNNNCTG 1 cut(s) 533
CciI TCATGA 1 cut(s) 520
CfoI GCGC 1 cut(s) 510
Cfr13I GGNCC 1 cut(s) 674
CseI GACGC 1 cut(s) 108
Csp6I GTAC 4 cut(s) 47, 102, 484, 576
CviAII CATG 4 cut(s) 144, 371, 521, 636
CviJI RGCY 9 cut(s) 140, 239, 254, 336, 409, 553, 561, 704, 719
CviKI_1 RGCY 9 cut(s) 140, 239, 254, 336, 409, 553, 561, 704, 719
CviQI GTAC 4 cut(s) 47, 102, 484, 576
DdeI CTNAG 3 cut(s) 74, 375, 447
DpnI GATC 3 cut(s) 355, 634, 751
DpnII GATC 3 cut(s) 353, 632, 749
DraI TTTAAA 2 cut(s) 681, 723
Eam1104I CTCTTC 2 cut(s) 176, 275
EarI CTCTTC 2 cut(s) 176, 275
Eco47I GGWCC 1 cut(s) 674
EcoNI CCTNNNNNAGG 1 cut(s) 669
EcoO109I RGGNCCY 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 820
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 4 cut(s) 147, 374, 524, 639
FatI CATG 4 cut(s) 143, 370, 520, 635
FauNDI CATATG 1 cut(s) 469
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 768
FokI GGATG 2 cut(s) 429, 717
Fsp4HI GCNGC 1 cut(s) 768
GlaI GCGC 1 cut(s) 509
GluI GCNGC 1 cut(s) 768
GsuI CTGGAG 1 cut(s) 120
HgaI GACGC 1 cut(s) 108
HhaI GCGC 1 cut(s) 510
Hin1II CATG 4 cut(s) 147, 374, 524, 639
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HincII GTYRAC 1 cut(s) 368
HindII GTYRAC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 702
HinfI GANTC 5 cut(s) 26, 326, 512, 524, 605
Hpy166II GTNNAC 3 cut(s) 104, 368, 486
Hpy188I TCNGA 6 cut(s) 190, 215, 378, 430, 610, 643
Hpy188III TCNNGA 7 cut(s) 67, 76, 314, 446, 521, 534, 734
Hpy8I GTNNAC 3 cut(s) 104, 368, 486
HpyAV CCTTC 3 cut(s) 151, 564, 675
HpyCH4IV ACGT 3 cut(s) 63, 226, 830
HpyCH4V TGCA 7 cut(s) 43, 221, 245, 624, 813, 818, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 824
HpyF3I CTNAG 3 cut(s) 74, 375, 447
HpySE526I ACGT 3 cut(s) 63, 226, 830
Hsp92II CATG 4 cut(s) 147, 374, 524, 639
HspAI GCGC 1 cut(s) 508
Kzo9I GATC 3 cut(s) 353, 632, 749
Lsp1109I GCAGC 1 cut(s) 779
LweI GCATC 4 cut(s) 232, 539, 739, 751
MaeII ACGT 3 cut(s) 63, 226, 830
MaeIII GTNAC 2 cut(s) 9, 227
MalI GATC 3 cut(s) 355, 634, 751
MboI GATC 3 cut(s) 353, 632, 749
MboII GAAGA 8 cut(s) 193, 257, 262, 329, 332, 647, 701, 744
MflI RGATCY 1 cut(s) 749
MluCI AATT 5 cut(s) 79, 205, 651, 776, 802
MlyI GAGTC 2 cut(s) 506, 614
MnlI CCTC 1 cut(s) 42
Mph1103I ATGCAT 1 cut(s) 820
MseI TTAA 6 cut(s) 258, 498, 680, 696, 722, 792
MspA1I CMGCKG 1 cut(s) 279
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 2 cut(s) 251, 824
NdeI CATATG 1 cut(s) 469
NdeII GATC 3 cut(s) 353, 632, 749
NlaIII CATG 4 cut(s) 147, 374, 524, 639
NmuCI GTSAC 2 cut(s) 9, 227
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 1 cut(s) 374
PagI TCATGA 1 cut(s) 520
PcsI WCGNNNNNNNCGW 2 cut(s) 232, 507
PfeI GAWTC 3 cut(s) 26, 326, 524
PkrI GCNGC 1 cut(s) 769
PleI GAGTC 2 cut(s) 506, 613
PpsI GAGTC 2 cut(s) 506, 613
PpuMI RGGWCCY 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 674
PspPI GGNCC 1 cut(s) 674
PspPPI RGGWCCY 1 cut(s) 674
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 1 cut(s) 749
RsaI GTAC 4 cut(s) 48, 103, 485, 577
RsaNI GTAC 4 cut(s) 47, 102, 484, 576
SalI GTCGAC 1 cut(s) 366
SaqAI TTAA 6 cut(s) 258, 498, 680, 696, 722, 792
SatI GCNGC 1 cut(s) 768
Sau3AI GATC 3 cut(s) 353, 632, 749
Sau96I GGNCC 1 cut(s) 674
SchI GAGTC 2 cut(s) 506, 614
SfaNI GCATC 4 cut(s) 232, 539, 739, 751
SinI GGWCC 1 cut(s) 674
Sse9I AATT 5 cut(s) 79, 205, 651, 776, 802
SsiI CCGC 1 cut(s) 279
TaiI ACGT 3 cut(s) 66, 229, 833
TaqI TCGA 2 cut(s) 92, 367
TaqII GACCGA 1 cut(s) 701
TasI AATT 5 cut(s) 79, 205, 651, 776, 802
TatI WGTACW 2 cut(s) 101, 575
TfiI GAWTC 3 cut(s) 26, 326, 524
Tru1I TTAA 6 cut(s) 258, 498, 680, 696, 722, 792
Tru9I TTAA 6 cut(s) 258, 498, 680, 696, 722, 792
TseFI GTSAC 2 cut(s) 9, 227
TseI GCWGC 1 cut(s) 767
Tsp45I GTSAC 2 cut(s) 9, 227
TspDTI ATGAA 7 cut(s) 72, 116, 132, 413, 450, 509, 630
VpaK11BI GGWCC 1 cut(s) 674
XagI CCTNNNNNAGG 1 cut(s) 669
XapI RAATTY 4 cut(s) 79, 205, 651, 776
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.