Rh2AG278800

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005875
Physical Location & Seq
Reverse (-)
33468601 .. 33474988
6388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG278800.1

Sequence Viewer

Length: 813 bp
ATGCAAGTACCCAGATGGAGAAACGTCTTGATACTCAGGAATTCATTGATTTCGATGACTTGTACACCAACCCATTTAGCGTCATTTCATTCTACTCCAGCTTCATGTGAGAAGTGGAAGGACAAATGGAACTTTGATGTGAAGAGTTCAGAACAACCATCAAAGAATTTCGTCAGATATGCAACACGTCACAAGCGAGCTGATGCAAAGAAAGCCCTTAAAAATCTTCTCTTCAACAGCGGATACTCCCCTAAACTCTCATATCAGCACATTCAGGAAGAAGATGATTCAGGTAGCTCTCCTAAAACAGGTAGCTCTCCTAAAAATCATAGATCAAAATCTTGTCGACATGCTCAGAAATCCCACCACAAGAAAATGAAACGCAAGCTCAAACGAGAGAGTTTCTCTGATGATGAAAACCATCCTGAGACAATCTTTCAGGCAACATATGGCAAGAGATGGTACACTTGGTCTTTTAACGCACAGCGTGACTCTTTTCATGATTCAGCATCTGGATTTGATTGGAGAGAGCCTTCAAGCTGGAAAGATAGAAGTACAAGATGGGAAAACATTAGTGATGTAGAGTCTGATGATGAACAATGTACCATAGGATCATGTTCCGATAGAAAAATTCTTGGTCTCCCTTCAACAGGTCCTTTAAAGACCGAAGATGTTAAAAAAGCTTTCCATTTATCAGCTTTAAAATGGCATCCTGACAAGCATCAAGGATCTTCACAGGAAATGGCAGCAGAGAAATTTAGACTTTGTGTTAATGCTTACAATTCTCTGTGCAATGCATTATCTGCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

270

Amino Acids

31.12

Weight (kDa)

9.47

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 210 - 265 1.7e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 346
AciI CCGC 1 cut(s) 240
AclWI GGATC 2 cut(s) 619, 736
AcsI RAATTY 4 cut(s) 40, 166, 630, 755
AdeI CACNNNGTG 1 cut(s) 488
AfaI GTAC 5 cut(s) 9, 64, 464, 556, 604
AfiI CCNNNNNNNGG 2 cut(s) 308, 650
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 3 cut(s) 235, 537, 648
AjiI CACGTC 1 cut(s) 188
AluBI AGCT 8 cut(s) 101, 200, 297, 315, 388, 540, 683, 698
AluI AGCT 8 cut(s) 101, 200, 297, 315, 388, 540, 683, 698
Alw26I GTCTC 2 cut(s) 422, 644
AlwI GGATC 2 cut(s) 619, 736
AlwNI CAGNNNCTG 1 cut(s) 512
ApeKI GCWGC 1 cut(s) 746
ApoI RAATTY 4 cut(s) 40, 166, 630, 755
AspS9I GGNCC 1 cut(s) 653
AvaII GGWCC 1 cut(s) 653
BbvI GCAGC 1 cut(s) 758
BccI CCATC 5 cut(s) 9, 166, 429, 453, 555
BciVI GTATCC 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 422, 644
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 1 cut(s) 747
BlsI GCNGC 1 cut(s) 748
Bme18I GGWCC 1 cut(s) 653
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 653
BmsI GCATC 4 cut(s) 193, 518, 718, 730
BplI GAGNNNNNCTC 2 cut(s) 389, 421
BpmI CTGGAG 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 337
BsaI GGTCTC 1 cut(s) 644
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 650
Bse3DI GCAATG 1 cut(s) 799
Bse8I GATNNNNATC 1 cut(s) 337
BseGI GGATG 2 cut(s) 421, 709
BseJI GATNNNNATC 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 308, 650
BseMI GCAATG 1 cut(s) 799
BseMII CTCAG 3 cut(s) 49, 368, 417
BseXI GCAGC 1 cut(s) 758
BslI CCNNNNNNNGG 2 cut(s) 308, 650
BsmAI GTCTC 2 cut(s) 422, 644
Bso31I GGTCTC 1 cut(s) 644
Bsp1407I TGTACA 1 cut(s) 62
Bsp143I GATC 3 cut(s) 332, 611, 728
BspACI CCGC 1 cut(s) 240
BspCNI CTCAG 3 cut(s) 48, 367, 418
BspHI TCATGA 1 cut(s) 499
BspPI GGATC 2 cut(s) 619, 736
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 799
BsrGI TGTACA 1 cut(s) 62
BssMI GATC 3 cut(s) 332, 611, 728
Bst6I CTCTTC 2 cut(s) 137, 236
BstAPI GCANNNNNTGC 1 cut(s) 803
BstAUI TGTACA 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 198, 386
BstDEI CTNAG 3 cut(s) 35, 354, 426
BstENI CCTNNNNNAGG 2 cut(s) 306, 648
BstF5I GGATG 2 cut(s) 421, 709
BstKTI GATC 3 cut(s) 335, 614, 731
BstMAI GTCTC 2 cut(s) 422, 644
BstMBI GATC 3 cut(s) 332, 611, 728
BstMWI GCNNNNNNNGC 2 cut(s) 212, 803
BstNSI RCATGY 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 758
BstX2I RGATCY 1 cut(s) 728
BstYI RGATCY 1 cut(s) 728
BsuI GTATCC 1 cut(s) 236
BtrI CACGTC 1 cut(s) 188
BtsCI GGATG 2 cut(s) 421, 709
Cac8I GCNNGC 2 cut(s) 198, 386
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 499
Cfr13I GGNCC 1 cut(s) 653
CseI GACGC 1 cut(s) 69
Csp6I GTAC 5 cut(s) 8, 63, 463, 555, 603
CviAII CATG 4 cut(s) 105, 350, 500, 615
CviQI GTAC 5 cut(s) 8, 63, 463, 555, 603
DdeI CTNAG 3 cut(s) 35, 354, 426
DpnI GATC 3 cut(s) 334, 613, 730
DpnII GATC 3 cut(s) 332, 611, 728
DraI TTTAAA 2 cut(s) 660, 702
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 2 cut(s) 137, 236
EarI CTCTTC 2 cut(s) 137, 236
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 1 cut(s) 653
EcoNI CCTNNNNNAGG 2 cut(s) 306, 648
EcoO109I RGGNCCY 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 799
FaeI CATG 4 cut(s) 108, 353, 503, 618
FatI CATG 4 cut(s) 104, 349, 499, 614
FauNDI CATATG 1 cut(s) 448
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 747
FokI GGATG 2 cut(s) 408, 696
Fsp4HI GCNGC 1 cut(s) 747
GluI GCNGC 1 cut(s) 747
GsuI CTGGAG 1 cut(s) 81
HgaI GACGC 1 cut(s) 69
Hin1II CATG 4 cut(s) 108, 353, 503, 618
HincII GTYRAC 1 cut(s) 347
HindII GTYRAC 1 cut(s) 347
HindIII AAGCTT 1 cut(s) 681
HinfI GANTC 4 cut(s) 287, 491, 503, 584
Hpy166II GTNNAC 3 cut(s) 65, 347, 465
Hpy188I TCNGA 6 cut(s) 151, 176, 357, 409, 589, 622
Hpy188III TCNNGA 7 cut(s) 28, 37, 275, 425, 500, 513, 713
Hpy8I GTNNAC 3 cut(s) 65, 347, 465
HpyAV CCTTC 3 cut(s) 112, 543, 654
HpyCH4IV ACGT 2 cut(s) 24, 187
HpyCH4V TGCA 6 cut(s) 4, 182, 206, 792, 797, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 803
HpyF3I CTNAG 3 cut(s) 35, 354, 426
HpySE526I ACGT 2 cut(s) 24, 187
Hsp92II CATG 4 cut(s) 108, 353, 503, 618
Kzo9I GATC 3 cut(s) 332, 611, 728
Lsp1109I GCAGC 1 cut(s) 758
LweI GCATC 4 cut(s) 193, 518, 718, 730
MaeII ACGT 2 cut(s) 24, 187
MaeIII GTNAC 2 cut(s) 188, 488
MalI GATC 3 cut(s) 334, 613, 730
MboI GATC 3 cut(s) 332, 611, 728
MboII GAAGA 7 cut(s) 154, 218, 223, 290, 293, 680, 723
MflI RGATCY 1 cut(s) 728
MluCI AATT 5 cut(s) 40, 166, 630, 755, 781
MlyI GAGTC 2 cut(s) 485, 593
Mph1103I ATGCAT 1 cut(s) 799
MseI TTAA 7 cut(s) 219, 477, 659, 675, 701, 771, 811
MspA1I CMGCKG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 212, 803
NdeI CATATG 1 cut(s) 448
NdeII GATC 3 cut(s) 332, 611, 728
NlaIII CATG 4 cut(s) 108, 353, 503, 618
NmuCI GTSAC 2 cut(s) 188, 488
NsiI ATGCAT 1 cut(s) 799
NspI RCATGY 1 cut(s) 353
PagI TCATGA 1 cut(s) 499
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PfeI GAWTC 2 cut(s) 287, 503
PkrI GCNGC 1 cut(s) 748
PleI GAGTC 2 cut(s) 485, 592
PpsI GAGTC 2 cut(s) 485, 592
PpuMI RGGWCCY 1 cut(s) 653
Psp5II RGGWCCY 1 cut(s) 653
PspPI GGNCC 1 cut(s) 653
PspPPI RGGWCCY 1 cut(s) 653
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 728
RsaI GTAC 5 cut(s) 9, 64, 464, 556, 604
RsaNI GTAC 5 cut(s) 8, 63, 463, 555, 603
SalI GTCGAC 1 cut(s) 345
SaqAI TTAA 7 cut(s) 219, 477, 659, 675, 701, 771, 811
SatI GCNGC 1 cut(s) 747
Sau3AI GATC 3 cut(s) 332, 611, 728
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 2 cut(s) 485, 593
SfaNI GCATC 4 cut(s) 193, 518, 718, 730
SinI GGWCC 1 cut(s) 653
Sse9I AATT 5 cut(s) 40, 166, 630, 755, 781
SsiI CCGC 1 cut(s) 240
TaiI ACGT 2 cut(s) 27, 190
TaqI TCGA 2 cut(s) 53, 346
TaqII GACCGA 1 cut(s) 680
TasI AATT 5 cut(s) 40, 166, 630, 755, 781
TatI WGTACW 2 cut(s) 62, 554
TfiI GAWTC 2 cut(s) 287, 503
Tru1I TTAA 7 cut(s) 219, 477, 659, 675, 701, 771, 811
Tru9I TTAA 7 cut(s) 219, 477, 659, 675, 701, 771, 811
TseFI GTSAC 2 cut(s) 188, 488
TseI GCWGC 1 cut(s) 746
Tsp45I GTSAC 2 cut(s) 188, 488
TspDTI ATGAA 7 cut(s) 33, 77, 93, 392, 429, 488, 609
VpaK11BI GGWCC 1 cut(s) 653
XagI CCTNNNNNAGG 2 cut(s) 306, 648
XapI RAATTY 4 cut(s) 40, 166, 630, 755
XceI RCATGY 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 346
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.