Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005875

Physical Location & Seq

Genomic Coordinates Reverse (-)

2295229 .. 2307243

Gene Structure 12015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g02810.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCAAATACCCAGATGGAGAAACGTCTTGCTCCTCAAGAATTCATTGGTTTCATCAACTTCTGCAGCTACCCGTTTCGCTTCATTCCATTCTACTCCTGCTTCGTGTGAGAAGTGGAAGAACAAATGGACCTTTGATGTAAAAAGCAGTCAACAACCAACAAAGAGTTATATCAGATACGAAACACGTCAGAAGCGTGCTGATGCAAAGAAGGCCCTGAAAAACCTCCTCTTCAACAGTGGGTCCTCTAAAGGTTTATTCCATGACATTCAGAATGAAGATTTTTCGGGTAGCCCTCCTAAGAAACATAGATCAAGATCTTCTCGACATGCTGAGAAATCGCAACAAAAGAAAATGAAAAGGAAGTTTAAAAGAGAGAGTTTCTCTGAAGACTATGACAATGATCCTGAGAAAATCTTTCGGGCGACATTTGGAAAGAAATGGTACACCTGGTCTTTTAAGTCACAACGTGACTCTTCTTACCAAGATTCAGAATCTGGATTTGAGTGGAGAGAGCAATCGAGCTGGAGAAGTAGAAGTAAGAGATGGGAGAATAGTAGTGACACAGAATCTGATGACGAATCATGTACTATAGGATCATTTTCTGATAGAACAATTCTCGGTCTGCCTCGAACAGGTCCTTTAAAGACCGAAGATGTTAAAAAAGCTTTCCATTTATCAGCTTTAAAATGGCATCCTGACAAGCATCAAGGCACTTCACAGGAAATCGCCGAAGAGAAATTTAAACTTTGTCTTAATGCCTACAAATCTCTGTGCAATGCATTAACCCCGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

266

Amino Acids

30.85

Weight (kDa)

9.79

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18465
fragaria_vesca	FvH4_1g23620 FvH4_1g23620
malus_domestica	MD01G1016700.v1.1
prunus_persica	Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1
pyrus_communis	pycom01g02810
rosa_chinensis	RchiOBHm_Chr2g0119201
rosa_laevigata	RLG00000018451
rosa_multiflora	Rmu_sc0000184.1_g000010
rosa_roxburghii	Rroxscaffold_2G00124450
rosa_rugosa	Rorug02G0220900
rosa_samantha	Rh2AG278800 Rh2BG289700 Rh2DG284800 Rh2DG303800
rosa_wichuraiana	Rw2G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	398, 604
AcsI	RAATTY	2 cut(s)	40, 740
AcuI	CTGAAG	1 cut(s)	408
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	2 cut(s)	446, 589
AfiI	CCNNNNNNNGG	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	4 cut(s)	68, 525, 668, 683
AluI	AGCT	4 cut(s)	68, 525, 668, 683
AlwI	GGATC	2 cut(s)	398, 604
AlwNI	CAGNNNCTG	2 cut(s)	497, 572
AoxI	GGCC	2 cut(s)	213, 792
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	40, 740
AspS9I	GGNCC	4 cut(s)	129, 214, 243, 638
AsuC2I	CCSGG	1 cut(s)	791
AvaII	GGWCC	3 cut(s)	129, 243, 638
BbsI	GAAGAC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	2 cut(s)	9, 540
BciT130I	CCWGG	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	791
BfmI	CTRYAG	2 cut(s)	63, 591
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	451, 791
Bme18I	GGWCC	3 cut(s)	129, 243, 638
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	4 cut(s)	129, 214, 243, 638
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	451, 791
BmsI	GCATC	3 cut(s)	193, 703, 715
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpmI	CTGGAG	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	791
BsaBI	GATNNNNATC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	789
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse3DI	GCAATG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	1 cut(s)	694
BseJI	GATNNNNATC	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	2 cut(s)	324, 399
BseRI	GAGGAG	2 cut(s)	23, 218
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	215, 794
BsiSI	CCGG	1 cut(s)	791
BslI	CCNNNNNNNGG	1 cut(s)	635
BsnI	GGCC	2 cut(s)	215, 794
Bsp143I	GATC	4 cut(s)	311, 317, 403, 596
BspANI	GGCC	2 cut(s)	215, 794
BspCNI	CTCAG	2 cut(s)	325, 400
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	2 cut(s)	398, 604
BsrDI	GCAATG	1 cut(s)	784
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	4 cut(s)	311, 317, 403, 596
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	3 cut(s)	236, 481, 729
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	300, 333, 408
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	1 cut(s)	694
BstKTI	GATC	4 cut(s)	314, 320, 406, 599
BstMBI	GATC	4 cut(s)	311, 317, 403, 596
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	451
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	449, 789
BstSFI	CTRYAG	2 cut(s)	63, 591
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	215, 794
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	694
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	198
CaiI	CAGNNNCTG	2 cut(s)	497, 572
Cfr13I	GGNCC	4 cut(s)	129, 214, 243, 638
CsiI	ACCWGGT	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	445, 588
CviAII	CATG	3 cut(s)	263, 329, 585
CviJI	RGCY	7 cut(s)	68, 215, 294, 525, 668, 683, 794
CviKI_1	RGCY	7 cut(s)	68, 215, 294, 525, 668, 683, 794
CviQI	GTAC	2 cut(s)	445, 588
DdeI	CTNAG	3 cut(s)	300, 333, 408
DpnI	GATC	4 cut(s)	313, 319, 405, 598
DpnII	GATC	4 cut(s)	311, 317, 403, 596
DraI	TTTAAA	4 cut(s)	370, 645, 687, 745
DraIII	CACNNNGTG	1 cut(s)	470
Eam1104I	CTCTTC	3 cut(s)	236, 481, 729
EarI	CTCTTC	3 cut(s)	236, 481, 729
Eco47I	GGWCC	3 cut(s)	129, 243, 638
Eco57I	CTGAAG	1 cut(s)	408
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoO109I	RGGNCCY	3 cut(s)	214, 243, 638
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	449
EcoT22I	ATGCAT	1 cut(s)	784
FaeI	CATG	3 cut(s)	266, 332, 588
FaiI	YATR	7 cut(s)	171, 264, 309, 330, 396, 586, 593
FatI	CATG	3 cut(s)	262, 328, 584
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	681
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	547
HaeIII	GGCC	2 cut(s)	215, 794
HapII	CCGG	1 cut(s)	791
Hin1II	CATG	3 cut(s)	266, 332, 588
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	5 cut(s)	473, 488, 494, 569, 581
HpaII	CCGG	1 cut(s)	791
Hpy166II	GTNNAC	2 cut(s)	152, 447
Hpy188I	TCNGA	7 cut(s)	176, 192, 273, 388, 493, 574, 607
Hpy188III	TCNNGA	6 cut(s)	37, 315, 324, 407, 498, 698
Hpy8I	GTNNAC	2 cut(s)	152, 447
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	3 cut(s)	24, 187, 469
HpyCH4V	TGCA	5 cut(s)	4, 65, 206, 777, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	300, 333, 408
HpySE526I	ACGT	3 cut(s)	24, 187, 469
Hsp92II	CATG	3 cut(s)	266, 332, 588
Kzo9I	GATC	4 cut(s)	311, 317, 403, 596
LmnI	GCTCC	1 cut(s)	36
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	3 cut(s)	193, 703, 715
MabI	ACCWGGT	1 cut(s)	449
MaeII	ACGT	3 cut(s)	24, 187, 469
MaeIII	GTNAC	3 cut(s)	462, 470, 560
MalI	GATC	4 cut(s)	313, 319, 405, 598
MboI	GATC	4 cut(s)	311, 317, 403, 596
MboII	GAAGA	8 cut(s)	130, 223, 290, 312, 401, 468, 665, 746
MflI	RGATCY	1 cut(s)	317
MluCI	AATT	3 cut(s)	40, 615, 740
MlyI	GAGTC	1 cut(s)	467
MnlI	CCTC	6 cut(s)	44, 236, 239, 256, 306, 639
Mph1103I	ATGCAT	1 cut(s)	784
MseI	TTAA	8 cut(s)	369, 459, 644, 660, 686, 744, 756, 785
MspI	CCGG	1 cut(s)	791
MspR9I	CCNGG	2 cut(s)	451, 791
MvaI	CCWGG	1 cut(s)	451
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	791
NdeII	GATC	4 cut(s)	311, 317, 403, 596
NlaIII	CATG	3 cut(s)	266, 332, 588
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	3 cut(s)	462, 470, 560
NsiI	ATGCAT	1 cut(s)	784
NspI	RCATGY	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PfeI	GAWTC	4 cut(s)	488, 494, 569, 581
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PpuMI	RGGWCCY	2 cut(s)	243, 638
Psp5II	RGGWCCY	2 cut(s)	243, 638
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	4 cut(s)	129, 214, 243, 638
PspPPI	RGGWCCY	2 cut(s)	243, 638
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	2 cut(s)	497, 572
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	2 cut(s)	446, 589
RsaNI	GTAC	2 cut(s)	445, 588
SaqAI	TTAA	8 cut(s)	369, 459, 644, 660, 686, 744, 756, 785
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	4 cut(s)	311, 317, 403, 596
Sau96I	GGNCC	4 cut(s)	129, 214, 243, 638
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	451, 791
SexAI	ACCWGGT	1 cut(s)	449
SfaNI	GCATC	3 cut(s)	193, 703, 715
SfcI	CTRYAG	2 cut(s)	63, 591
SinI	GGWCC	3 cut(s)	129, 243, 638
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	40, 615, 740
StyD4I	CCNGG	2 cut(s)	449, 789
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	3 cut(s)	27, 190, 472
TaqI	TCGA	3 cut(s)	325, 521, 631
TaqII	GACCGA	2 cut(s)	611, 665
TasI	AATT	3 cut(s)	40, 615, 740
TatI	WGTACW	1 cut(s)	587
TfiI	GAWTC	4 cut(s)	488, 494, 569, 581
Tru1I	TTAA	8 cut(s)	369, 459, 644, 660, 686, 744, 756, 785
Tru9I	TTAA	8 cut(s)	369, 459, 644, 660, 686, 744, 756, 785
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	3 cut(s)	462, 470, 560
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	3 cut(s)	462, 470, 560
TspDTI	ATGAA	5 cut(s)	33, 42, 72, 291, 371
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	3 cut(s)	129, 243, 638
XagI	CCTNNNNNAGG	1 cut(s)	633
XapI	RAATTY	2 cut(s)	40, 740
XceI	RCATGY	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.