Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000184.1

Orthogroup ID

OG0005875

Physical Location & Seq

Genomic Coordinates Forward (+)

33245 .. 39176

Gene Structure 5932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000184.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgacttgtacaccaacccatttagcgtcatttcattctactccagcttcatgtgagaagtggaaggacaaatggaactttgatgtgaagagttcagaacaaccatcaaagaatttcgtcagatatgcaacacgtcacaagcgagctgatgcaaagaaagcccttaaaaatcttctcttcaacagcggatactcccctaaactctcatatcagcacattcaggaagaagatgattcaggtagctctcctaaaacaggtagctctcctaaaaatcatagatcaaaatcttgtcgacatgctcagaaatcccaccacaagaaaatgaaacgcaagctcaaacgagagagtttctctgatgatgaaaaccatcctgagacaatctttcaggcaacatatggcaagagatggtacacttggtcttttaacgcacagcgcgactcttttcatgattcagcatctggatttgattggagagagccttcaagctggaaagatagaagtacaagatgggaaaacattagtgatgtagagtctgatgatgaacaatgtaccataggatcatgttccgatagaaaaattcttggcctcccttcaacaggtcctttaaagaccgaagatgttaaaaaagctttccatttatcagctttaaaatggcatcctgacaagcatcaaggatcttcacaggaaatggcagcagagaaatttagactttgtgttaatgcttacaattctctgtgcaatgcattatctgcaacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

252

Amino Acids

28.94

Weight (kDa)

9.28

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18465
fragaria_vesca	FvH4_1g23620 FvH4_1g23620
malus_domestica	MD01G1016700.v1.1
prunus_persica	Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G131200_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1 Prupe.6G162400_v2.0.a1
pyrus_communis	pycom01g02810
rosa_chinensis	RchiOBHm_Chr2g0119201
rosa_laevigata	RLG00000018451
rosa_multiflora	Rmu_sc0000184.1_g000010
rosa_roxburghii	Rroxscaffold_2G00124450
rosa_rugosa	Rorug02G0220900
rosa_samantha	Rh2AG278800 Rh2BG289700 Rh2DG284800 Rh2DG303800
rosa_wichuraiana	Rw2G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	292
AccII	CGCG	1 cut(s)	435
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	2 cut(s)	565, 682
AcsI	RAATTY	3 cut(s)	112, 576, 701
AfaI	GTAC	4 cut(s)	10, 410, 502, 550
AfiI	CCNNNNNNNGG	2 cut(s)	254, 596
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	3 cut(s)	181, 483, 594
AjiI	CACGTC	1 cut(s)	134
AluBI	AGCT	8 cut(s)	47, 146, 243, 261, 334, 486, 629, 644
AluI	AGCT	8 cut(s)	47, 146, 243, 261, 334, 486, 629, 644
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	565, 682
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	583
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	3 cut(s)	112, 576, 701
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	599
BbvI	GCAGC	1 cut(s)	704
BccI	CCATC	4 cut(s)	112, 375, 399, 501
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	693
BlsI	GCNGC	1 cut(s)	694
Bme18I	GGWCC	1 cut(s)	599
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	599
BmsI	GCATC	4 cut(s)	139, 464, 664, 676
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 596
Bse3DI	GCAATG	1 cut(s)	745
Bse8I	GATNNNNATC	1 cut(s)	283
BseGI	GGATG	2 cut(s)	367, 655
BseJI	GATNNNNATC	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	254, 596
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	2 cut(s)	314, 363
BseXI	GCAGC	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	254, 596
BsmAI	GTCTC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	278, 557, 674
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	585
BspCNI	CTCAG	2 cut(s)	313, 364
BspFNI	CGCG	1 cut(s)	435
BspHI	TCATGA	1 cut(s)	445
BspPI	GGATC	2 cut(s)	565, 682
BsrDI	GCAATG	1 cut(s)	745
BsrGI	TGTACA	1 cut(s)	8
BssMI	GATC	3 cut(s)	278, 557, 674
Bst6I	CTCTTC	2 cut(s)	83, 182
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstAUI	TGTACA	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	144, 332
BstDEI	CTNAG	2 cut(s)	300, 372
BstENI	CCTNNNNNAGG	2 cut(s)	252, 594
BstF5I	GGATG	2 cut(s)	367, 655
BstFNI	CGCG	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	3 cut(s)	281, 560, 677
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	3 cut(s)	278, 557, 674
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 749
BstNSI	RCATGY	1 cut(s)	299
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	704
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	585
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	367, 655
Cac8I	GCNNGC	2 cut(s)	144, 332
CaiI	CAGNNNCTG	1 cut(s)	458
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	4 cut(s)	9, 409, 501, 549
CviAII	CATG	4 cut(s)	51, 296, 446, 561
CviQI	GTAC	4 cut(s)	9, 409, 501, 549
DdeI	CTNAG	2 cut(s)	300, 372
DpnI	GATC	3 cut(s)	280, 559, 676
DpnII	GATC	3 cut(s)	278, 557, 674
DraI	TTTAAA	2 cut(s)	606, 648
Eam1104I	CTCTTC	2 cut(s)	83, 182
EarI	CTCTTC	2 cut(s)	83, 182
Eco47I	GGWCC	1 cut(s)	599
EcoNI	CCTNNNNNAGG	2 cut(s)	252, 594
EcoO109I	RGGNCCY	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	745
FaeI	CATG	4 cut(s)	54, 299, 449, 564
FatI	CATG	4 cut(s)	50, 295, 445, 560
FauNDI	CATATG	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	693
FokI	GGATG	2 cut(s)	354, 642
Fsp4HI	GCNGC	1 cut(s)	693
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	1 cut(s)	693
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	585
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	54, 299, 449, 564
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HindIII	AAGCTT	1 cut(s)	627
HinfI	GANTC	4 cut(s)	233, 437, 449, 530
Hpy166II	GTNNAC	3 cut(s)	11, 293, 411
Hpy188I	TCNGA	6 cut(s)	97, 122, 303, 355, 535, 568
Hpy188III	TCNNGA	5 cut(s)	221, 371, 446, 459, 659
Hpy8I	GTNNAC	3 cut(s)	11, 293, 411
HpyAV	CCTTC	3 cut(s)	58, 489, 600
HpyCH4IV	ACGT	2 cut(s)	133, 755
HpyCH4V	TGCA	5 cut(s)	128, 152, 738, 743, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 749
HpyF3I	CTNAG	2 cut(s)	300, 372
HpySE526I	ACGT	2 cut(s)	133, 755
Hsp92II	CATG	4 cut(s)	54, 299, 449, 564
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	278, 557, 674
Lsp1109I	GCAGC	1 cut(s)	704
LweI	GCATC	4 cut(s)	139, 464, 664, 676
MaeII	ACGT	2 cut(s)	133, 755
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	280, 559, 676
MboI	GATC	3 cut(s)	278, 557, 674
MboII	GAAGA	7 cut(s)	100, 164, 169, 236, 239, 626, 669
MflI	RGATCY	1 cut(s)	674
MluCI	AATT	4 cut(s)	112, 576, 701, 727
MlyI	GAGTC	2 cut(s)	431, 539
MnlI	CCTC	1 cut(s)	596
Mph1103I	ATGCAT	1 cut(s)	745
MseI	TTAA	6 cut(s)	165, 423, 605, 621, 647, 717
MspA1I	CMGCKG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	158, 749
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	3 cut(s)	278, 557, 674
NlaIII	CATG	4 cut(s)	54, 299, 449, 564
NmuCI	GTSAC	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	1 cut(s)	299
PagI	TCATGA	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	2 cut(s)	139, 432
PfeI	GAWTC	2 cut(s)	233, 449
PkrI	GCNGC	1 cut(s)	694
PleI	GAGTC	2 cut(s)	431, 538
PpsI	GAGTC	2 cut(s)	431, 538
PpuMI	RGGWCCY	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	599
PspPI	GGNCC	1 cut(s)	599
PspPPI	RGGWCCY	1 cut(s)	599
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	4 cut(s)	10, 410, 502, 550
RsaNI	GTAC	4 cut(s)	9, 409, 501, 549
SalI	GTCGAC	1 cut(s)	291
SaqAI	TTAA	6 cut(s)	165, 423, 605, 621, 647, 717
SatI	GCNGC	1 cut(s)	693
Sau3AI	GATC	3 cut(s)	278, 557, 674
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	2 cut(s)	431, 539
SfaNI	GCATC	4 cut(s)	139, 464, 664, 676
SinI	GGWCC	1 cut(s)	599
Sse9I	AATT	4 cut(s)	112, 576, 701, 727
SsiI	CCGC	1 cut(s)	186
TaiI	ACGT	2 cut(s)	136, 758
TaqI	TCGA	1 cut(s)	292
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	4 cut(s)	112, 576, 701, 727
TatI	WGTACW	2 cut(s)	8, 500
TfiI	GAWTC	2 cut(s)	233, 449
Tru1I	TTAA	6 cut(s)	165, 423, 605, 621, 647, 717
Tru9I	TTAA	6 cut(s)	165, 423, 605, 621, 647, 717
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	6 cut(s)	23, 39, 338, 375, 434, 555
VpaK11BI	GGWCC	1 cut(s)	599
XagI	CCTNNNNNAGG	2 cut(s)	252, 594
XapI	RAATTY	3 cut(s)	112, 576, 701
XceI	RCATGY	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.