FvH4_1g23620

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005875
Physical Location & Seq
Reverse (-)
15433407 .. 15441469
8063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23620.t1

Sequence Viewer

Length: 795 bp
ATGCAAGTACCCAGATGGAGAAACTTTATGATACTCAGGAATTCATTGATTCCGTCGACGTGTACGGCGACCCGTTTAGCGTCGTTTCATTCCACTCCTTCTTCATTTGAGAAGAGGAAAGACAAATGGAACTTTGATGTGAAGAGTTCAGAACAACCATCAAAGAATTTCATCAGATATGCAACTCGTCACAAGCGGGCTGATGCAAAGAAAGCCCTTAAAAATCTCCTCTTCAACTGTGGATACTGCCCTAAAGTGTCATATCAGCACATTCAGGCTGAAGATGCTTCAGGTAGCTCACCTAAAAATCATAGATCAAACTCTTATCGACATGCTCAGAAATCCCACCACAAGAAAATGAAACGCAAGCTCAAAAGAGAGAGTTTCTCTGATGACGAAAACCATCCGGAGACAATCTTTCAGGCGACATATGGCAAGAGATGGTACACTTGGTCTTTTAACGCACAACATAACTCTTTTCAAGATTCATCATATGGCTTTGAGTGGAGAGAGCCTTCAAGCTGGAAAGATACAAAGAAAAGTTGGGAAAACATTAGTGGCATAGAGACTGACGATGAAGAATGTACCATAGGATCAAGTTCTGATAGAAAAATTCTTGGTCTCCCTTCGACAGGTCCTTTAAAGACCGAAGATGTTAAAAAAGCTTTCCATTTATCAGCTTTAAAATGGCATCCTGACAAGCATCAAGGATCTTCACAGGAAATGGCAGCAGAGAAATTTAGGCATTGTGTCAATGCGTACAATTCTCTGTGCAATGCATTATCCTCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

265

Amino Acids

30.57

Weight (kDa)

9.59

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 204 - 259 1.5e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 1 cut(s) 196
AclWI GGATC 2 cut(s) 601, 718
AcsI RAATTY 4 cut(s) 40, 166, 612, 737
AcuI CTGAAG 2 cut(s) 273, 300
AfaI GTAC 5 cut(s) 9, 64, 446, 586, 761
AfiI CCNNNNNNNGG 1 cut(s) 632
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 3 cut(s) 235, 482, 519
AjiI CACGTC 1 cut(s) 60
AluBI AGCT 5 cut(s) 297, 370, 522, 665, 680
AluI AGCT 5 cut(s) 297, 370, 522, 665, 680
Alw26I GTCTC 3 cut(s) 404, 560, 626
AlwI GGATC 2 cut(s) 601, 718
Aor13HI TCCGGA 1 cut(s) 406
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 4 cut(s) 40, 166, 612, 737
AspS9I GGNCC 1 cut(s) 635
AsuHPI GGTGA 1 cut(s) 291
AvaII GGWCC 1 cut(s) 635
BbvCI CCTCAGC 1 cut(s) 787
BbvI GCAGC 1 cut(s) 740
BccI CCATC 4 cut(s) 9, 166, 411, 435
BceAI ACGGC 1 cut(s) 81
BciVI GTATCC 1 cut(s) 236
BcoDI GTCTC 3 cut(s) 404, 560, 626
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 1 cut(s) 729
BlsI GCNGC 1 cut(s) 730
Bme18I GGWCC 1 cut(s) 635
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 635
BmsI GCATC 4 cut(s) 193, 274, 700, 712
BplI GAGNNNNNCTC 2 cut(s) 371, 403
Bpu10I CCTNAGC 1 cut(s) 787
BsaI GGTCTC 1 cut(s) 626
BsaWI WCCGGW 1 cut(s) 406
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 781
BseAI TCCGGA 1 cut(s) 406
BseGI GGATG 2 cut(s) 403, 691
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 2 cut(s) 49, 350
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 740
BsiSI CCGG 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 3 cut(s) 404, 560, 626
Bso31I GGTCTC 1 cut(s) 626
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 3 cut(s) 314, 593, 710
BspACI CCGC 1 cut(s) 196
BspCNI CTCAG 2 cut(s) 48, 349
BspEI TCCGGA 1 cut(s) 406
BspPI GGATC 2 cut(s) 601, 718
BspTNI GGTCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 781
BssMI GATC 3 cut(s) 314, 593, 710
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 3 cut(s) 107, 137, 236
BstC8I GCNNGC 2 cut(s) 198, 368
BstDEI CTNAG 3 cut(s) 35, 336, 787
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 2 cut(s) 403, 691
BstKTI GATC 3 cut(s) 317, 596, 713
BstMAI GTCTC 3 cut(s) 404, 560, 626
BstMBI GATC 3 cut(s) 314, 593, 710
BstMWI GCNNNNNNNGC 2 cut(s) 212, 284
BstNSI RCATGY 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 740
BstX2I RGATCY 1 cut(s) 710
BstYI RGATCY 1 cut(s) 710
BsuI GTATCC 1 cut(s) 236
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 2 cut(s) 403, 691
Cac8I GCNNGC 2 cut(s) 198, 368
Cfr13I GGNCC 1 cut(s) 635
CseI GACGC 1 cut(s) 69
Csp6I GTAC 5 cut(s) 8, 63, 445, 585, 760
CviAII CATG 1 cut(s) 332
CviQI GTAC 5 cut(s) 8, 63, 445, 585, 760
DdeI CTNAG 3 cut(s) 35, 336, 787
DpnI GATC 3 cut(s) 316, 595, 712
DpnII GATC 3 cut(s) 314, 593, 710
DraI TTTAAA 2 cut(s) 642, 684
Eam1104I CTCTTC 3 cut(s) 107, 137, 236
EarI CTCTTC 3 cut(s) 107, 137, 236
Eco31I GGTCTC 1 cut(s) 626
Eco47I GGWCC 1 cut(s) 635
Eco57I CTGAAG 2 cut(s) 273, 300
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 781
FaeI CATG 1 cut(s) 335
FatI CATG 1 cut(s) 331
FauI CCCGC 1 cut(s) 189
FauNDI CATATG 2 cut(s) 430, 493
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 729
FokI GGATG 2 cut(s) 390, 678
Fsp4HI GCNGC 1 cut(s) 729
GluI GCNGC 1 cut(s) 729
HapII CCGG 1 cut(s) 407
HgaI GACGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 335
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 2 cut(s) 49, 485
HpaII CCGG 1 cut(s) 407
HphI GGTGA 1 cut(s) 291
Hpy166II GTNNAC 3 cut(s) 57, 63, 447
Hpy188I TCNGA 5 cut(s) 151, 176, 339, 391, 604
Hpy188III TCNNGA 4 cut(s) 37, 407, 482, 695
Hpy8I GTNNAC 3 cut(s) 57, 63, 447
Hpy99I CGWCG 3 cut(s) 58, 61, 85
HpyAV CCTTC 3 cut(s) 108, 525, 636
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 5 cut(s) 4, 182, 206, 774, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 284
HpyF3I CTNAG 3 cut(s) 35, 336, 787
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 1 cut(s) 335
Kpn2I TCCGGA 1 cut(s) 406
Kzo9I GATC 3 cut(s) 314, 593, 710
Lsp1109I GCAGC 1 cut(s) 740
LweI GCATC 4 cut(s) 193, 274, 700, 712
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 188
MalI GATC 3 cut(s) 316, 595, 712
MboI GATC 3 cut(s) 314, 593, 710
MboII GAAGA 8 cut(s) 93, 124, 154, 223, 293, 590, 662, 705
MflI RGATCY 1 cut(s) 710
MluCI AATT 5 cut(s) 40, 166, 612, 737, 763
MnlI CCTC 2 cut(s) 108, 239
Mph1103I ATGCAT 1 cut(s) 781
MroI TCCGGA 1 cut(s) 406
MseI TTAA 5 cut(s) 219, 459, 641, 657, 683
MspI CCGG 1 cut(s) 407
MwoI GCNNNNNNNGC 2 cut(s) 212, 284
NdeI CATATG 2 cut(s) 430, 493
NdeII GATC 3 cut(s) 314, 593, 710
NlaIII CATG 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PfeI GAWTC 2 cut(s) 49, 485
PkrI GCNGC 1 cut(s) 730
PpuMI RGGWCCY 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 635
PspPI GGNCC 1 cut(s) 635
PspPPI RGGWCCY 1 cut(s) 635
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 5 cut(s) 9, 64, 446, 586, 761
RsaNI GTAC 5 cut(s) 8, 63, 445, 585, 760
SalI GTCGAC 1 cut(s) 55
SaqAI TTAA 5 cut(s) 219, 459, 641, 657, 683
SatI GCNGC 1 cut(s) 729
Sau3AI GATC 3 cut(s) 314, 593, 710
Sau96I GGNCC 1 cut(s) 635
SetI ASST 9 cut(s) 62, 295, 299, 304, 372, 524, 637, 667, 682
SfaNI GCATC 4 cut(s) 193, 274, 700, 712
SgrDI CGTCGACG 1 cut(s) 55
SinI GGWCC 1 cut(s) 635
Sse9I AATT 5 cut(s) 40, 166, 612, 737, 763
SsiI CCGC 1 cut(s) 196
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 56, 328, 629
TaqII GACCGA 1 cut(s) 662
TasI AATT 5 cut(s) 40, 166, 612, 737, 763
TfiI GAWTC 2 cut(s) 49, 485
Tru1I TTAA 5 cut(s) 219, 459, 641, 657, 683
Tru9I TTAA 5 cut(s) 219, 459, 641, 657, 683
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 7 cut(s) 33, 77, 93, 160, 374, 477, 591
TspGWI ACGGA 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 635
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 4 cut(s) 40, 166, 612, 737
XceI RCATGY 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.