Rh2DG284800

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005875
Physical Location & Seq
Reverse (-)
32765886 .. 32774163
8278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG284800.1

Sequence Viewer

Length: 795 bp
ATGCAAGTACCCAGATGGAGAAACGTCTTGATACTCAGGAATTCATTGATTTCGATGACTTGTACACCAACCCATTTAGCGTCTTTTCATTCTACTCCAGCTTCATGTGAGAAGTGGAAGGACAAATGGAACTTTGATGTGAAGAGTTCAGAACAACCATCAAAGAATTTCGTCAGATATGCAACACGTCACAAGCGAGCTGATGCAAAGAAAGCCCTTAAAAATCTTCTCTTCAACAGCGGATACTCCCCTAAACTCTCATATCAGCACATTCAGGAAGAAGATGATTCAGGTAGCTCTCCTAAAAATCATAGATCAAAATCTTGTCGACATGCTCAGAAATCCCACCACAAGAAAATGAAACGCAAGCTCAAACGAGAGAGTTTCTCTGATGATGAAAACCATCCTGAGACAATCTTTCAGGCAACATATGGCAAGAGATGGTACACTTGGTCTTTTAACGCACAGCGTGACTCTTTTCATGATTCAGCATCTGGATTTGATTGGAGAGAGTCTTCAAGCTGGAAAGATAGAAGTACAAGATGGGAAAACATTAGTGATGTAGAGTCTGATGATGAACAATGTACCATAGGATCATGTTCCGATAGAAAAATTCTTGGTCTCCCTTCAACAGGTCCTTTAAAGACCGAAGATGTTAAAAAAGCTTTCCATTTATCAGCTTTAAAATGGCATCCTGACAAGCATCAAGGATCTTCACAGGAAATGGCAGCAGAGAAATTTAGACTTTGTGTTAATGCTTACAATTCTCTGTGCAATGCATTATCTGCAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

264

Amino Acids

30.55

Weight (kDa)

9.42

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 204 - 259 1.6e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 328
AciI CCGC 1 cut(s) 240
AclWI GGATC 2 cut(s) 601, 718
AcsI RAATTY 4 cut(s) 40, 166, 612, 737
AdeI CACNNNGTG 1 cut(s) 470
AfaI GTAC 5 cut(s) 9, 64, 446, 538, 586
AfiI CCNNNNNNNGG 1 cut(s) 632
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 3 cut(s) 235, 519, 630
AjiI CACGTC 1 cut(s) 188
AluBI AGCT 7 cut(s) 101, 200, 297, 370, 522, 665, 680
AluI AGCT 7 cut(s) 101, 200, 297, 370, 522, 665, 680
Alw26I GTCTC 2 cut(s) 404, 626
AlwI GGATC 2 cut(s) 601, 718
AlwNI CAGNNNCTG 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 4 cut(s) 40, 166, 612, 737
AspS9I GGNCC 1 cut(s) 635
AvaII GGWCC 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 507
BbvI GCAGC 1 cut(s) 740
BccI CCATC 5 cut(s) 9, 166, 411, 435, 537
BciVI GTATCC 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 404, 626
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 1 cut(s) 729
BlsI GCNGC 1 cut(s) 730
Bme18I GGWCC 1 cut(s) 635
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 635
BmsI GCATC 4 cut(s) 193, 500, 700, 712
BpiI GAAGAC 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpmI CTGGAG 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 626
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 781
Bse8I GATNNNNATC 1 cut(s) 319
BseGI GGATG 2 cut(s) 403, 691
BseJI GATNNNNATC 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 3 cut(s) 49, 350, 399
BseXI GCAGC 1 cut(s) 740
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 2 cut(s) 404, 626
Bso31I GGTCTC 1 cut(s) 626
Bsp1407I TGTACA 1 cut(s) 62
Bsp143I GATC 3 cut(s) 314, 593, 710
BspACI CCGC 1 cut(s) 240
BspCNI CTCAG 3 cut(s) 48, 349, 400
BspHI TCATGA 1 cut(s) 481
BspPI GGATC 2 cut(s) 601, 718
BspTNI GGTCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 781
BsrGI TGTACA 1 cut(s) 62
BssMI GATC 3 cut(s) 314, 593, 710
Bst6I CTCTTC 2 cut(s) 137, 236
BstAPI GCANNNNNTGC 1 cut(s) 785
BstAUI TGTACA 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 198, 368
BstDEI CTNAG 3 cut(s) 35, 336, 408
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 2 cut(s) 403, 691
BstKTI GATC 3 cut(s) 317, 596, 713
BstMAI GTCTC 2 cut(s) 404, 626
BstMBI GATC 3 cut(s) 314, 593, 710
BstMWI GCNNNNNNNGC 2 cut(s) 212, 785
BstNSI RCATGY 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 740
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 1 cut(s) 710
BstYI RGATCY 1 cut(s) 710
BsuI GTATCC 1 cut(s) 236
BtrI CACGTC 1 cut(s) 188
BtsCI GGATG 2 cut(s) 403, 691
Cac8I GCNNGC 2 cut(s) 198, 368
CaiI CAGNNNCTG 1 cut(s) 494
CciI TCATGA 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 635
CseI GACGC 1 cut(s) 69
Csp6I GTAC 5 cut(s) 8, 63, 445, 537, 585
CviAII CATG 4 cut(s) 105, 332, 482, 597
CviJI RGCY 8 cut(s) 101, 200, 215, 297, 370, 522, 665, 680
CviKI_1 RGCY 8 cut(s) 101, 200, 215, 297, 370, 522, 665, 680
CviQI GTAC 5 cut(s) 8, 63, 445, 537, 585
DdeI CTNAG 3 cut(s) 35, 336, 408
DpnI GATC 3 cut(s) 316, 595, 712
DpnII GATC 3 cut(s) 314, 593, 710
DraI TTTAAA 2 cut(s) 642, 684
DraIII CACNNNGTG 1 cut(s) 470
Eam1104I CTCTTC 2 cut(s) 137, 236
EarI CTCTTC 2 cut(s) 137, 236
Eco31I GGTCTC 1 cut(s) 626
Eco47I GGWCC 1 cut(s) 635
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 781
FaeI CATG 4 cut(s) 108, 335, 485, 600
FatI CATG 4 cut(s) 104, 331, 481, 596
FauNDI CATATG 1 cut(s) 430
FblI GTMKAC 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 729
FokI GGATG 2 cut(s) 390, 678
Fsp4HI GCNGC 1 cut(s) 729
GluI GCNGC 1 cut(s) 729
GsuI CTGGAG 1 cut(s) 81
HgaI GACGC 1 cut(s) 69
Hin1II CATG 4 cut(s) 108, 335, 485, 600
HincII GTYRAC 1 cut(s) 329
HindII GTYRAC 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 5 cut(s) 287, 473, 485, 512, 566
Hpy166II GTNNAC 3 cut(s) 65, 329, 447
Hpy188I TCNGA 6 cut(s) 151, 176, 339, 391, 571, 604
Hpy188III TCNNGA 7 cut(s) 28, 37, 275, 407, 482, 495, 695
Hpy8I GTNNAC 3 cut(s) 65, 329, 447
HpyAV CCTTC 2 cut(s) 112, 636
HpyCH4IV ACGT 3 cut(s) 24, 187, 791
HpyCH4V TGCA 6 cut(s) 4, 182, 206, 774, 779, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 785
HpyF3I CTNAG 3 cut(s) 35, 336, 408
HpySE526I ACGT 3 cut(s) 24, 187, 791
Hsp92II CATG 4 cut(s) 108, 335, 485, 600
Kzo9I GATC 3 cut(s) 314, 593, 710
Lsp1109I GCAGC 1 cut(s) 740
LweI GCATC 4 cut(s) 193, 500, 700, 712
MaeII ACGT 3 cut(s) 24, 187, 791
MaeIII GTNAC 2 cut(s) 188, 470
MalI GATC 3 cut(s) 316, 595, 712
MboI GATC 3 cut(s) 314, 593, 710
MboII GAAGA 8 cut(s) 154, 218, 223, 290, 293, 507, 662, 705
MflI RGATCY 1 cut(s) 710
MluCI AATT 5 cut(s) 40, 166, 612, 737, 763
MlyI GAGTC 3 cut(s) 467, 521, 575
Mph1103I ATGCAT 1 cut(s) 781
MseI TTAA 6 cut(s) 219, 459, 641, 657, 683, 753
MspA1I CMGCKG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 212, 785
NdeI CATATG 1 cut(s) 430
NdeII GATC 3 cut(s) 314, 593, 710
NlaIII CATG 4 cut(s) 108, 335, 485, 600
NmuCI GTSAC 2 cut(s) 188, 470
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 1 cut(s) 335
PagI TCATGA 1 cut(s) 481
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PfeI GAWTC 2 cut(s) 287, 485
PkrI GCNGC 1 cut(s) 730
PleI GAGTC 3 cut(s) 467, 520, 574
PpsI GAGTC 3 cut(s) 467, 520, 574
PpuMI RGGWCCY 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 635
PspPI GGNCC 1 cut(s) 635
PspPPI RGGWCCY 1 cut(s) 635
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 5 cut(s) 9, 64, 446, 538, 586
RsaNI GTAC 5 cut(s) 8, 63, 445, 537, 585
SalI GTCGAC 1 cut(s) 327
SaqAI TTAA 6 cut(s) 219, 459, 641, 657, 683, 753
SatI GCNGC 1 cut(s) 729
Sau3AI GATC 3 cut(s) 314, 593, 710
Sau96I GGNCC 1 cut(s) 635
SchI GAGTC 3 cut(s) 467, 521, 575
SfaNI GCATC 4 cut(s) 193, 500, 700, 712
SinI GGWCC 1 cut(s) 635
Sse9I AATT 5 cut(s) 40, 166, 612, 737, 763
SsiI CCGC 1 cut(s) 240
TaiI ACGT 3 cut(s) 27, 190, 794
TaqI TCGA 2 cut(s) 53, 328
TaqII GACCGA 1 cut(s) 662
TasI AATT 5 cut(s) 40, 166, 612, 737, 763
TatI WGTACW 2 cut(s) 62, 536
TfiI GAWTC 2 cut(s) 287, 485
Tru1I TTAA 6 cut(s) 219, 459, 641, 657, 683, 753
Tru9I TTAA 6 cut(s) 219, 459, 641, 657, 683, 753
TseFI GTSAC 2 cut(s) 188, 470
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 2 cut(s) 188, 470
TspDTI ATGAA 7 cut(s) 33, 77, 93, 374, 411, 470, 591
VpaK11BI GGWCC 1 cut(s) 635
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 4 cut(s) 40, 166, 612, 737
XceI RCATGY 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 328
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.