RLG00000018451

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005875
Physical Location & Seq
Reverse (-)
29925413 .. 29931421
6009 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018451

Sequence Viewer

Length: 741 bp
ATGACTTGTACACCAACCCATTTAGCGTCATTTCATTCTACTCCAGCTTCATGTGAGAAGTGGAAGGACAAATGGAACTTTGATGTGAAGAGTTCAGAACAACCATCAAAGAATTTCGTCAGATATGCAACTCGTCACAAGCGAGCTGATGCAAAGAAAGCCCTTAAAAATCTTCTCTTCAACAGCGGATACTCCCCTAAAGTCTCATATCAGCACATTCAGGAAGAAAATGATTCAGGTAGCTCTCCTAAAAATCATAGATCAAAATCTTGTCGACATGCTCAGAAATCCCACCACAAGAAAATGAAACGCAAGCTCAAACGAGAGAGTTTCTCTGATGATGAAAACCATCCTGAGACAATCTTTCAGGCAACATACGGCAAGAGATGGTACACTTGGTCTTTTAGCGCACAGCGCGACTCTTTTCATGATTCAGCGTCTGGATTTGATTGGAGAGAGCCTTCAAGCTGGAAAGATAGAAGTACAAGATGGGAAAACCTTAGTGATGTAGAGTCTGATGATGAACAATGTACCATAGGATTATGTTCCGATAGAAAAATTCTTGGTCTCCCTTCAACAGGTCCTTTAAAGACTGAAGATGTTAAAAAAGCTTTCCATTTATCAGCTTTAAAATGGCATCCTGACAAGCATCAAGGATCTTCACAGGAAATGGCAGCAGAGAAATTTAGACTTTGTGTTAATGCTTACAATTCTCTGTGCAATGCATTATCTGCAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

247

Amino Acids

28.36

Weight (kDa)

9.29

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 186 - 241 1.5e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 274
AccII CGCG 1 cut(s) 417
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 664
AcsI RAATTY 3 cut(s) 112, 558, 683
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 4 cut(s) 10, 392, 484, 532
AfiI CCNNNNNNNGG 1 cut(s) 578
AgsI TTSAA 3 cut(s) 181, 465, 576
AluBI AGCT 7 cut(s) 47, 146, 243, 316, 468, 611, 626
AluI AGCT 7 cut(s) 47, 146, 243, 316, 468, 611, 626
Alw26I GTCTC 3 cut(s) 208, 350, 572
AlwI GGATC 1 cut(s) 664
AlwNI CAGNNNCTG 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 674
ApoI RAATTY 3 cut(s) 112, 558, 683
AspLEI GCGC 2 cut(s) 410, 417
AspS9I GGNCC 1 cut(s) 581
AvaII GGWCC 1 cut(s) 581
BbvI GCAGC 1 cut(s) 686
BccI CCATC 4 cut(s) 112, 357, 381, 483
BceAI ACGGC 1 cut(s) 394
BciVI GTATCC 1 cut(s) 182
BcoDI GTCTC 3 cut(s) 208, 350, 572
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 1 cut(s) 675
BlsI GCNGC 1 cut(s) 676
Bme18I GGWCC 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 581
BmsI GCATC 3 cut(s) 139, 646, 658
BplI GAGNNNNNCTC 2 cut(s) 317, 349
BpmI CTGGAG 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 572
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse3DI GCAATG 1 cut(s) 727
Bse8I GATNNNNATC 1 cut(s) 265
BseGI GGATG 2 cut(s) 349, 637
BseJI GATNNNNATC 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 2 cut(s) 296, 345
BseXI GCAGC 1 cut(s) 686
Bsh1236I CGCG 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 3 cut(s) 208, 350, 572
Bso31I GGTCTC 1 cut(s) 572
Bsp1407I TGTACA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 260, 656
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 295, 346
BspFNI CGCG 1 cut(s) 417
BspHI TCATGA 1 cut(s) 427
BspPI GGATC 1 cut(s) 664
BspTNI GGTCTC 1 cut(s) 572
BsrDI GCAATG 1 cut(s) 727
BsrGI TGTACA 1 cut(s) 8
BssMI GATC 2 cut(s) 260, 656
Bst6I CTCTTC 2 cut(s) 83, 182
BstAPI GCANNNNNTGC 1 cut(s) 731
BstAUI TGTACA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 144, 314
BstDEI CTNAG 3 cut(s) 282, 354, 500
BstENI CCTNNNNNAGG 1 cut(s) 576
BstF5I GGATG 2 cut(s) 349, 637
BstFNI CGCG 1 cut(s) 417
BstHHI GCGC 2 cut(s) 410, 417
BstKTI GATC 2 cut(s) 263, 659
BstMAI GTCTC 3 cut(s) 208, 350, 572
BstMBI GATC 2 cut(s) 260, 656
BstMWI GCNNNNNNNGC 3 cut(s) 158, 414, 731
BstNSI RCATGY 1 cut(s) 281
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 686
BstX2I RGATCY 1 cut(s) 656
BstYI RGATCY 1 cut(s) 656
BsuI GTATCC 1 cut(s) 182
BtsCI GGATG 2 cut(s) 349, 637
Cac8I GCNNGC 2 cut(s) 144, 314
CaiI CAGNNNCTG 1 cut(s) 440
CciI TCATGA 1 cut(s) 427
CfoI GCGC 2 cut(s) 410, 417
Cfr13I GGNCC 1 cut(s) 581
CseI GACGC 2 cut(s) 15, 426
Csp6I GTAC 4 cut(s) 9, 391, 483, 531
CviAII CATG 3 cut(s) 51, 278, 428
CviJI RGCY 9 cut(s) 47, 146, 161, 243, 316, 460, 468, 611, 626
CviKI_1 RGCY 9 cut(s) 47, 146, 161, 243, 316, 460, 468, 611, 626
CviQI GTAC 4 cut(s) 9, 391, 483, 531
DdeI CTNAG 3 cut(s) 282, 354, 500
DpnI GATC 2 cut(s) 262, 658
DpnII GATC 2 cut(s) 260, 656
DraI TTTAAA 2 cut(s) 588, 630
Eam1104I CTCTTC 2 cut(s) 83, 182
EarI CTCTTC 2 cut(s) 83, 182
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 615
EcoNI CCTNNNNNAGG 1 cut(s) 576
EcoO109I RGGNCCY 1 cut(s) 581
EcoT22I ATGCAT 1 cut(s) 727
FaeI CATG 3 cut(s) 54, 281, 431
FaiI YATR 9 cut(s) 52, 126, 208, 258, 279, 376, 429, 536, 544
FatI CATG 3 cut(s) 50, 277, 427
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 675
FokI GGATG 2 cut(s) 336, 624
Fsp4HI GCNGC 1 cut(s) 675
GlaI GCGC 2 cut(s) 409, 416
GluI GCNGC 1 cut(s) 675
GsuI CTGGAG 1 cut(s) 27
HgaI GACGC 2 cut(s) 15, 426
HhaI GCGC 2 cut(s) 410, 417
Hin1II CATG 3 cut(s) 54, 281, 431
Hin6I GCGC 2 cut(s) 408, 415
HinP1I GCGC 2 cut(s) 408, 415
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 4 cut(s) 233, 419, 431, 512
Hpy166II GTNNAC 3 cut(s) 11, 275, 393
Hpy188I TCNGA 6 cut(s) 97, 122, 285, 337, 517, 550
Hpy188III TCNNGA 5 cut(s) 221, 353, 428, 441, 641
Hpy8I GTNNAC 3 cut(s) 11, 275, 393
HpyAV CCTTC 3 cut(s) 58, 471, 582
HpyCH4IV ACGT 1 cut(s) 737
HpyCH4V TGCA 5 cut(s) 128, 152, 720, 725, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 414, 731
HpyF3I CTNAG 3 cut(s) 282, 354, 500
HpySE526I ACGT 1 cut(s) 737
Hsp92II CATG 3 cut(s) 54, 281, 431
HspAI GCGC 2 cut(s) 408, 415
Kzo9I GATC 2 cut(s) 260, 656
Lsp1109I GCAGC 1 cut(s) 686
LweI GCATC 3 cut(s) 139, 646, 658
MaeII ACGT 1 cut(s) 737
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 262, 658
MboI GATC 2 cut(s) 260, 656
MboII GAAGA 6 cut(s) 100, 164, 169, 236, 608, 651
MflI RGATCY 1 cut(s) 656
MluCI AATT 4 cut(s) 112, 558, 683, 709
MlyI GAGTC 2 cut(s) 413, 521
Mph1103I ATGCAT 1 cut(s) 727
MseI TTAA 5 cut(s) 165, 587, 603, 629, 699
MspA1I CMGCKG 1 cut(s) 186
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 3 cut(s) 158, 414, 731
NdeII GATC 2 cut(s) 260, 656
NlaIII CATG 3 cut(s) 54, 281, 431
NmuCI GTSAC 1 cut(s) 134
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 281
PagI TCATGA 1 cut(s) 427
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PfeI GAWTC 2 cut(s) 233, 431
PkrI GCNGC 1 cut(s) 676
PleI GAGTC 2 cut(s) 413, 520
PpsI GAGTC 2 cut(s) 413, 520
PpuMI RGGWCCY 1 cut(s) 581
Psp5II RGGWCCY 1 cut(s) 581
PspPI GGNCC 1 cut(s) 581
PspPPI RGGWCCY 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 656
RsaI GTAC 4 cut(s) 10, 392, 484, 532
RsaNI GTAC 4 cut(s) 9, 391, 483, 531
SalI GTCGAC 1 cut(s) 273
SaqAI TTAA 5 cut(s) 165, 587, 603, 629, 699
SatI GCNGC 1 cut(s) 675
Sau3AI GATC 2 cut(s) 260, 656
Sau96I GGNCC 1 cut(s) 581
SchI GAGTC 2 cut(s) 413, 521
SfaNI GCATC 3 cut(s) 139, 646, 658
SinI GGWCC 1 cut(s) 581
Sse9I AATT 4 cut(s) 112, 558, 683, 709
SsiI CCGC 1 cut(s) 186
TaiI ACGT 1 cut(s) 740
TaqI TCGA 1 cut(s) 274
TasI AATT 4 cut(s) 112, 558, 683, 709
TatI WGTACW 2 cut(s) 8, 482
TfiI GAWTC 2 cut(s) 233, 431
Tru1I TTAA 5 cut(s) 165, 587, 603, 629, 699
Tru9I TTAA 5 cut(s) 165, 587, 603, 629, 699
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 674
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 6 cut(s) 23, 39, 320, 357, 416, 537
VpaK11BI GGWCC 1 cut(s) 581
XagI CCTNNNNNAGG 1 cut(s) 576
XapI RAATTY 3 cut(s) 112, 558, 683
XceI RCATGY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 274
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.