AT2G18790

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009857
Physical Location & Seq
Forward (+)
8139756 .. 8144461
4706 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18790.1

Sequence Viewer

Length: 3519 bp
ATGGTTTCCGGAGTCGGGGGTAGTGGCGGTGGCCGTGGCGGTGGCCGTGGCGGAGAAGAAGAACCGTCGTCAAGTCACACTCCTAATAACCGAAGAGGAGGAGAACAAGCTCAATCGTCGGGAACGAAATCTCTCAGACCAAGAAGCAACACTGAATCAATGAGCAAAGCAATTCAACAGTACACCGTCGACGCAAGACTCCACGCCGTTTTCGAACAATCCGGCGAATCAGGGAAATCATTCGACTACTCACAATCACTCAAAACGACGACGTACGGTTCCTCTGTACCTGAGCAACAGATCACAGCTTATCTCTCTCGAATCCAGCGAGGTGGTTACATTCAGCCTTTCGGATGTATGATCGCCGTCGATGAATCCAGTTTCCGGATCATCGGTTACAGTGAAAACGCCAGAGAAATGTTAGGGATTATGCCTCAATCTGTTCCTACTCTTGAGAAACCTGAGATTCTAGCTATGGGAACTGATGTGAGATCTTTGTTCACTTCTTCGAGCTCGATTCTACTCGAGCGTGCTTTCGTTGCTCGAGAGATTACCTTGTTAAATCCGGTTTGGATCCATTCCAAGAATACTGGTAAACCGTTTTACGCCATTCTTCATAGGATTGATGTTGGTGTTGTTATTGATTTAGAGCCAGCTAGAACTGAAGATCCTGCGCTTTCTATTGCTGGTGCTGTTCAATCGCAGAAACTCGCGGTTCGTGCGATTTCTCAGTTACAGGCTCTTCCTGGTGGAGATATTAAGCTTTTGTGTGACACTGTCGTGGAAAGTGTGAGGGACTTGACTGGTTATGATCGTGTTATGGTTTATAAGTTTCATGAAGATGAGCATGGAGAAGTTGTAGCTGAGAGTAAACGAGATGATTTAGAGCCTTATATTGGACTGCATTATCCTGCTACTGATATTCCTCAAGCGTCAAGGTTCTTGTTTAAGCAGAACCGTGTCCGAATGATAGTAGATTGCAATGCCACACCTGTTCTTGTGGTCCAGGACGATAGGCTAACTCAGTCTATGTGCTTGGTTGGTTCTACTCTTAGGGCTCCTCATGGTTGTCACTCTCAGTATATGGCTAACATGGGATCTATTGCGTCTTTAGCAATGGCGGTTATAATCAATGGAAATGAAGATGATGGGAGCAATGTAGCTAGTGGAAGAAGCTCGATGAGGCTTTGGGGTTTGGTTGTTTGCCATCACACTTCTTCTCGCTGCATACCGTTTCCGCTAAGGTATGCTTGTGAGTTTTTGATGCAGGCTTTCGGTTTACAGTTAAACATGGAATTGCAGTTAGCTTTGCAAATGTCAGAGAAACGCGTTTTGAGAACGCAGACACTGTTATGTGATATGCTTCTGCGTGACTCGCCTGCTGGAATTGTTACACAGAGTCCCAGTATCATGGACTTAGTGAAATGTGACGGTGCAGCATTTCTTTACCACGGGAAGTATTACCCGTTGGGTGTTGCTCCTAGTGAAGTTCAGATAAAAGATGTTGTGGAGTGGTTGCTTGCGAATCATGCGGATTCAACCGGATTAAGCACTGATAGTTTAGGCGATGCGGGGTATCCCGGTGCAGCTGCGTTAGGGGATGCTGTGTGCGGTATGGCAGTTGCATATATCACAAAAAGAGACTTTCTTTTTTGGTTTCGATCTCACACTGCGAAAGAAATCAAATGGGGAGGCGCTAAGCATCATCCGGAGGATAAAGATGATGGGCAACGAATGCATCCTCGTTCGTCCTTTCAGGCTTTTCTTGAAGTTGTTAAGAGCCGGAGTCAGCCATGGGAAACTGCGGAAATGGATGCGATTCACTCGCTCCAGCTTATTCTGAGAGACTCTTTTAAAGAATCTGAGGCGGCTATGAACTCTAAAGTTGTGGATGGTGTGGTTCAGCCATGTAGGGATATGGCGGGGGAACAGGGGATTGATGAGTTAGGTGCAGTTGCAAGAGAGATGGTTAGGCTCATTGAGACTGCAACTGTTCCTATATTCGCTGTGGATGCCGGAGGCTGCATCAATGGATGGAACGCTAAGATTGCAGAGTTGACAGGTCTCTCAGTTGAAGAAGCTATGGGGAAGTCTCTGGTTTCTGATTTAATATACAAAGAGAATGAAGCAACTGTCAATAAGCTTCTTTCTCGTGCTTTGAGAGGGGACGAGGAAAAGAATGTGGAGGTTAAGCTGAAAACTTTCAGCCCCGAACTACAAGGGAAAGCAGTTTTTGTGGTTGTGAATGCTTGTTCCAGCAAGGACTACTTGAACAACATTGTCGGCGTTTGTTTTGTTGGACAAGACGTTACTAGTCAGAAAATCGTAATGGATAAGTTCATCAACATACAAGGAGATTACAAGGCTATTGTACATAGCCCAAACCCTCTAATCCCGCCAATTTTTGCTGCTGACGAGAACACGTGCTGCCTGGAATGGAACATGGCGATGGAAAAGCTTACGGGTTGGTCTCGCAGTGAAGTGATTGGGAAAATGATTGTCGGGGAAGTGTTTGGGAGCTGTTGCATGCTAAAGGGTCCTGATGCTTTAACCAAGTTCATGATTGTATTGCATAATGCGATTGGTGGCCAAGATACGGATAAGTTCCCTTTCCCATTCTTTGACCGCAATGGGAAGTTTGTTCAGGCTCTATTGACTGCAAACAAGCGGGTTAGCCTCGAGGGAAAGGTTATTGGGGCTTTCTGTTTCTTGCAAATCCCGAGCCCTGAGCTGCAGCAAGCTTTAGCAGTCCAACGGAGGCAGGACACAGAGTGTTTCACGAAGGCAAAAGAGTTGGCTTATATTTGTCAGGTGATAAAGAATCCTTTGAGCGGTATGCGTTTCGCAAACTCATTGTTGGAGGCCACAGACTTGAACGAGGACCAGAAGCAGTTACTTGAAACAAGTGTTTCTTGCGAGAAACAGATCTCAAGGATCGTCGGGGACATGGATCTTGAAAGCATTGAAGACGGTTCATTTGTGCTAAAGAGGGAAGAGTTTTTCCTTGGAAGTGTCATAAACGCGATTGTAAGTCAAGCGATGTTCTTATTAAGGGACAGAGGTCTTCAGCTGATCCGTGACATTCCCGAAGAGATCAAATCAATAGAGGTTTTTGGAGACCAGATAAGGATTCAACAGCTCCTGGCTGAGTTTCTGCTGAGTATAATCCGGTATGCACCATCTCAAGAGTGGGTGGAGATCCATTTAAGCCAACTTTCAAAGCAAATGGCTGATGGATTCGCCGCCATCCGCACAGAATTCAGAATGGCGTGTCCAGGTGAAGGTCTGCCTCCAGAGCTAGTCCGAGACATGTTCCATAGCAGCAGGTGGACAAGCCCTGAAGGTTTAGGTCTAAGCGTATGTCGAAAGATTTTAAAGCTAATGAACGGTGAGGTTCAATACATCCGAGAATCAGAACGGTCCTATTTCCTCATCATTCTGGAACTCCCTGTACCTCGAAAGCGACCATTGTCAACTGCTAGTGGAAGTGGTGACATGATGCTGATGATGCCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006325 GO:0006355 GO:0006464 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006810 GO:0006833 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0007623 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009649 GO:0009687 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009881 GO:0009883 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010029 GO:0010033 GO:0010114 GO:0010148 GO:0010161 GO:0010202 GO:0010218 GO:0010244 GO:0010374 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010617 GO:0010629 GO:0015979 GO:0016043 GO:0016604 GO:0017006 GO:0017007 GO:0017012 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019752 GO:0023052 GO:0030003 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031516 GO:0031517 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0036211 GO:0038023 GO:0042044 GO:0042221 GO:0042592 GO:0042752 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043288 GO:0043412 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048511 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051480 GO:0051606 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071395 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071495 GO:0071704 GO:0071840 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0090558 GO:0097159 GO:0098771 GO:0104004 GO:1900140 GO:1901363 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:1902644 GO:1902679 GO:1903506 GO:1903507 GO:1990841 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1172

Amino Acids

129.33

Weight (kDa)

5.62

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 103 - 219 6.4e-38 PAS fold
GAF PF01590 253 - 433 2e-16 GAF domain
PHY PF00360 446 - 621 1.6e-55 Phytochrome region
PAS PF00989 655 - 770 7e-23 PAS fold
PAS PF00989 786 - 905 4e-20 PAS fold
HisKA PF00512 928 - 991 3.4e-12 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 1039 - 1151 2.3e-12 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 828, 1127
AarI CACCTGC 1 cut(s) 3315
AbsI CCTCGAGG 1 cut(s) 2678
Acc36I ACCTGC 1 cut(s) 3315
AccBSI CCGCTC 1 cut(s) 2832
AccI GTMKAC 1 cut(s) 189
AccII CGCG 3 cut(s) 713, 1329, 3023
AccIII TCCGGA 3 cut(s) 8, 384, 1708
AclWI GGATC 9 cut(s) 395, 568, 581, 662, 1105, 2942, 2958, 3067, 3193
AcoI YGGCCR 3 cut(s) 31, 43, 2587
AcsI RAATTY 1 cut(s) 3257
AcuI CTGAAG 3 cut(s) 684, 3050, 3360
AcvI CACGTG 1 cut(s) 2424
AdeI CACNNNGTG 1 cut(s) 2772
AfaI GTAC 5 cut(s) 182, 275, 288, 2373, 3453
AfiI CCNNNNNNNGG 6 cut(s) 15, 384, 896, 2596, 2831, 3281
AflIII ACRYGT 3 cut(s) 1327, 2421, 3309
AhlI ACTAGT 1 cut(s) 2312
AjnI CCWGG 5 cut(s) 745, 1005, 2430, 3141, 3274
AleI CACNNNNGTG 1 cut(s) 779
AloI GAACNNNNNNTCC 2 cut(s) 652, 684
Alw21I GWGCWC 1 cut(s) 515
Alw26I GTCTC 8 cut(s) 1635, 1839, 1976, 2069, 2097, 2475, 3111, 3300
AlwI GGATC 9 cut(s) 395, 568, 581, 662, 1105, 2942, 2958, 3067, 3193
AlwNI CAGNNNCTG 2 cut(s) 1348, 3142
Ama87I CYCGRG 4 cut(s) 524, 543, 2678, 2719
Aor13HI TCCGGA 3 cut(s) 8, 384, 1708
AoxI GGCC 4 cut(s) 31, 43, 2587, 2862
ApoI RAATTY 1 cut(s) 3257
ArsI GACNNNNNNTTYG 2 cut(s) 2960, 2992
Asp700I GAANNNNTTC 2 cut(s) 239, 2201
AspLEI GCGC 2 cut(s) 676, 1697
AspS9I GGNCC 4 cut(s) 1003, 2537, 2881, 3420
AsuC2I CCSGG 1 cut(s) 1581
AsuHPI GGTGA 4 cut(s) 2824, 3290, 3401, 3503
AsuII TTCGAA 1 cut(s) 213
AvaI CYCGRG 4 cut(s) 524, 543, 2678, 2719
AvaII GGWCC 4 cut(s) 1003, 2537, 2881, 3420
BalI TGGCCA 1 cut(s) 2589
BamHI GGATCC 1 cut(s) 573
BanII GRGCYC 3 cut(s) 515, 1060, 2726
BauI CACGAG 1 cut(s) 2151
BbrPI CACGTG 1 cut(s) 2424
BbsI GAAGAC 2 cut(s) 2973, 3056
Bbv12I GWGCWC 1 cut(s) 515
BceAI ACGGC 4 cut(s) 18, 30, 191, 350
BciT130I CCWGG 5 cut(s) 747, 1007, 2432, 3143, 3276
BciVI GTATCC 1 cut(s) 1587
BcnI CCSGG 1 cut(s) 1581
BcoDI GTCTC 8 cut(s) 1635, 1839, 1976, 2069, 2097, 2475, 3111, 3300
BcuI ACTAGT 1 cut(s) 2312
BfaI CTAG 7 cut(s) 470, 657, 1164, 1482, 2313, 3299, 3480
BfmI CTRYAG 1 cut(s) 2732
BfoI RGCGCY 1 cut(s) 1698
BfuAI ACCTGC 1 cut(s) 3315
BfuI GTATCC 1 cut(s) 1587
BglII AGATCT 2 cut(s) 491, 2925
BlpI GCTNAGC 1 cut(s) 1698
Bme1390I CCNGG 6 cut(s) 747, 1007, 1581, 2432, 3143, 3276
Bme18I GGWCC 4 cut(s) 1003, 2537, 2881, 3420
BmeT110I CYCGRG 4 cut(s) 524, 543, 2678, 2719
BmgT120I GGNCC 4 cut(s) 1003, 2537, 2881, 3420
BmiI GGNNCC 4 cut(s) 280, 575, 1059, 2538
BmrFI CCNGG 6 cut(s) 747, 1007, 1581, 2432, 3143, 3276
BmrI ACTGGG 1 cut(s) 1398
BmuI ACTGGG 1 cut(s) 1398
BoxI GACNNNNGTC 2 cut(s) 3060, 3469
BpiI GAAGAC 2 cut(s) 2973, 3056
BpmI CTGGAG 2 cut(s) 1814, 3276
Bpu10I CCTNAGC 3 cut(s) 291, 1241, 2727
Bpu1102I GCTNAGC 1 cut(s) 1698
Bpu14I TTCGAA 1 cut(s) 213
BpuEI CTTGAG 4 cut(s) 473, 912, 2914, 3168
BpuMI CCSGG 1 cut(s) 1581
BsaAI YACGTR 1 cut(s) 2424
BsaI GGTCTC 3 cut(s) 2069, 2475, 3111
BsaJI CCNNGG 5 cut(s) 34, 46, 1450, 1793, 3004
BsaWI WCCGGW 6 cut(s) 8, 384, 565, 1541, 1708, 3168
BsaXI ACNNNNNCTCC 2 cut(s) 843, 873
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 384, 896, 2596, 2831, 3281
Bse1I ACTGG 4 cut(s) 378, 595, 808, 1404
Bse3DI GCAATG 4 cut(s) 988, 1122, 1162, 2635
BseAI TCCGGA 3 cut(s) 8, 384, 1708
BseBI CCWGG 5 cut(s) 747, 1007, 2432, 3143, 3276
BseDI CCNNGG 5 cut(s) 34, 46, 1450, 1793, 3004
BseLI CCNNNNNNNGG 6 cut(s) 15, 384, 896, 2596, 2831, 3281
BseMI GCAATG 4 cut(s) 988, 1122, 1162, 2635
BseNI ACTGG 4 cut(s) 378, 595, 808, 1404
BseRI GAGGAG 3 cut(s) 111, 114, 1050
BsgI GTGCAG 3 cut(s) 1455, 1605, 1971
Bsh1236I CGCG 3 cut(s) 713, 1329, 3023
BshFI GGCC 4 cut(s) 33, 45, 2589, 2864
BsiHKAI GWGCWC 1 cut(s) 515
BsiHKCI CYCGRG 4 cut(s) 524, 543, 2678, 2719
BsiWI CGTACG 1 cut(s) 273
BslFI GGGAC 5 cut(s) 809, 1386, 2180, 2957, 3068
BslI CCNNNNNNNGG 6 cut(s) 15, 384, 896, 2596, 2831, 3281
BsmAI GTCTC 8 cut(s) 1635, 1839, 1976, 2069, 2097, 2475, 3111, 3300
BsmFI GGGAC 5 cut(s) 809, 1386, 2180, 2957, 3068
BsmI GAATGC 2 cut(s) 1740, 2251
BsnI GGCC 4 cut(s) 33, 45, 2589, 2864
Bso31I GGTCTC 3 cut(s) 2069, 2475, 3111
BsoBI CYCGRG 4 cut(s) 524, 543, 2678, 2719
Bsp119I TTCGAA 1 cut(s) 213
Bsp1286I GDGCHC 3 cut(s) 515, 1060, 2726
Bsp13I TCCGGA 3 cut(s) 8, 384, 1708
Bsp1407I TGTACA 1 cut(s) 2371
Bsp1720I GCTNAGC 1 cut(s) 1698
Bsp19I CCATGG 1 cut(s) 1793
BspANI GGCC 4 cut(s) 33, 45, 2589, 2864
BspEI TCCGGA 3 cut(s) 8, 384, 1708
BspFNI CGCG 3 cut(s) 713, 1329, 3023
BspHI TCATGA 2 cut(s) 835, 2559
BspLI GGNNCC 4 cut(s) 280, 575, 1059, 2538
BspMAI CTGCAG 1 cut(s) 2736
BspMI ACCTGC 1 cut(s) 3315
BspPI GGATC 9 cut(s) 395, 568, 581, 662, 1105, 2942, 2958, 3067, 3193
BspQI GCTCTTC 1 cut(s) 747
BspT104I TTCGAA 1 cut(s) 213
BspTNI GGTCTC 3 cut(s) 2069, 2475, 3111
BsrBI CCGCTC 1 cut(s) 2832
BsrDI GCAATG 4 cut(s) 988, 1122, 1162, 2635
BsrGI TGTACA 1 cut(s) 2371
BsrI ACTGG 4 cut(s) 378, 595, 808, 1404
BssECI CCNNGG 5 cut(s) 34, 46, 1450, 1793, 3004
BssSI CACGAG 1 cut(s) 2151
BssT1I CCWWGG 2 cut(s) 1793, 3004
Bst2BI CACGAG 1 cut(s) 2151
Bst2UI CCWGG 5 cut(s) 747, 1007, 2432, 3143, 3276
Bst6I CTCTTC 4 cut(s) 88, 747, 2988, 3084
BstAPI GCANNNNNTGC 1 cut(s) 1735
BstAUI TGTACA 1 cut(s) 2371
BstBAI YACGTR 1 cut(s) 2424
BstBI TTCGAA 1 cut(s) 213
BstC8I GCNNGC 7 cut(s) 531, 654, 1269, 1380, 1521, 2528, 2739
BstDSI CCRYGG 4 cut(s) 34, 46, 1450, 1793
BstFNI CGCG 3 cut(s) 713, 1329, 3023
BstH2I RGCGCY 1 cut(s) 1698
BstHHI GCGC 2 cut(s) 676, 1697
BstMAI GTCTC 8 cut(s) 1635, 1839, 1976, 2069, 2097, 2475, 3111, 3300
BstNI CCWGG 5 cut(s) 747, 1007, 2432, 3143, 3276
BstNSI RCATGY 2 cut(s) 2530, 3313
BstPAI GACNNNNGTC 2 cut(s) 3060, 3469
BstSCI CCNGG 6 cut(s) 745, 1005, 1579, 2430, 3141, 3274
BstSFI CTRYAG 1 cut(s) 2732
BstUI CGCG 3 cut(s) 713, 1329, 3023
BstV2I GAAGAC 2 cut(s) 2973, 3056
BstX2I RGATCY 7 cut(s) 491, 573, 667, 1097, 2925, 2950, 3198
BstXI CCANNNNNNTGG 2 cut(s) 332, 1411
BstYI RGATCY 7 cut(s) 491, 573, 667, 1097, 2925, 2950, 3198
BsuI GTATCC 1 cut(s) 1587
BsuRI GGCC 4 cut(s) 33, 45, 2589, 2864
BtgI CCRYGG 4 cut(s) 34, 46, 1450, 1793
BtgZI GCGATG 3 cut(s) 1581, 2462, 3053
BtsI GCAGTG 2 cut(s) 1668, 2482
BtsIMutI CAGTG 7 cut(s) 150, 406, 774, 1346, 1551, 1668, 2482
BveI ACCTGC 1 cut(s) 3315
Cac8I GCNNGC 7 cut(s) 531, 654, 1269, 1380, 1521, 2528, 2739
CaiI CAGNNNCTG 2 cut(s) 1348, 3142
CciI TCATGA 2 cut(s) 835, 2559
CfoI GCGC 2 cut(s) 676, 1697
Cfr13I GGNCC 4 cut(s) 1003, 2537, 2881, 3420
CseI GACGC 3 cut(s) 200, 921, 1095
Csp6I GTAC 5 cut(s) 181, 274, 287, 2372, 3452
CviQI GTAC 5 cut(s) 181, 274, 287, 2372, 3452
DraI TTTAAA 2 cut(s) 1855, 3375
DraIII CACNNNGTG 1 cut(s) 2772
EaeI YGGCCR 3 cut(s) 31, 43, 2587
Eam1104I CTCTTC 4 cut(s) 88, 747, 2988, 3084
EarI CTCTTC 4 cut(s) 88, 747, 2988, 3084
EciI GGCGGA 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 513
Eco130I CCWWGG 2 cut(s) 1793, 3004
Eco24I GRGCYC 3 cut(s) 515, 1060, 2726
Eco31I GGTCTC 3 cut(s) 2069, 2475, 3111
Eco47I GGWCC 4 cut(s) 1003, 2537, 2881, 3420
Eco53kI GAGCTC 1 cut(s) 513
Eco57I CTGAAG 3 cut(s) 684, 3050, 3360
Eco72I CACGTG 1 cut(s) 2424
Eco88I CYCGRG 4 cut(s) 524, 543, 2678, 2719
EcoICRI GAGCTC 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 2537
EcoRI GAATTC 1 cut(s) 3257
EcoRII CCWGG 5 cut(s) 745, 1005, 2430, 3141, 3274
EcoT14I CCWWGG 2 cut(s) 1793, 3004
EcoT22I ATGCAT 1 cut(s) 1740
EcoT38I GRGCYC 3 cut(s) 515, 1060, 2726
ErhI CCWWGG 2 cut(s) 1793, 3004
FalI AAGNNNNNCTT 6 cut(s) 1234, 1266, 2252, 2284, 2896, 2928
FaqI GGGAC 5 cut(s) 809, 1386, 2180, 2957, 3068
FauI CCCGC 4 cut(s) 1564, 1915, 2403, 2661
FblI GTMKAC 1 cut(s) 189
FriOI GRGCYC 3 cut(s) 515, 1060, 2726
FspBI CTAG 7 cut(s) 470, 657, 1164, 1482, 2313, 3299, 3480
GlaI GCGC 2 cut(s) 675, 1696
GsuI CTGGAG 2 cut(s) 1814, 3276
HaeII RGCGCY 1 cut(s) 1698
HaeIII GGCC 4 cut(s) 33, 45, 2589, 2864
HgaI GACGC 3 cut(s) 200, 921, 1095
HhaI GCGC 2 cut(s) 676, 1697
Hin6I GCGC 2 cut(s) 674, 1695
HinP1I GCGC 2 cut(s) 674, 1695
HincII GTYRAC 3 cut(s) 190, 2058, 3474
HindII GTYRAC 3 cut(s) 190, 2058, 3474
HindIII AAGCTT 4 cut(s) 761, 2141, 2456, 2739
HphI GGTGA 4 cut(s) 2824, 3290, 3401, 3503
Hpy166II GTNNAC 9 cut(s) 183, 190, 501, 596, 872, 1280, 2058, 3330, 3474
Hpy8I GTNNAC 9 cut(s) 183, 190, 501, 596, 872, 1280, 2058, 3330, 3474
Hpy99I CGWCG 8 cut(s) 70, 121, 191, 194, 271, 274, 371, 2942
HpyAV CCTTC 3 cut(s) 2776, 3275, 3335
HpyCH4IV ACGT 3 cut(s) 272, 2307, 2423
HpySE526I ACGT 3 cut(s) 272, 2307, 2423
HspAI GCGC 2 cut(s) 674, 1695
Kpn2I TCCGGA 3 cut(s) 8, 384, 1708
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 6 cut(s) 1063, 1152, 1483, 1833, 2517, 3144
MaeI CTAG 7 cut(s) 470, 657, 1164, 1482, 2313, 3299, 3480
MaeII ACGT 3 cut(s) 272, 2307, 2423
MbiI CCGCTC 1 cut(s) 2832
MflI RGATCY 7 cut(s) 491, 573, 667, 1097, 2925, 2950, 3198
MhlI GDGCHC 3 cut(s) 515, 1060, 2726
MlsI TGGCCA 1 cut(s) 2589
MluCI AATT 5 cut(s) 171, 1295, 1386, 2400, 3257
MluI ACGCGT 1 cut(s) 1327
MluNI TGGCCA 1 cut(s) 2589
MlyI GAGTC 6 cut(s) 21, 192, 1367, 1408, 1795, 1841
MmeI TCCRAC 3 cut(s) 2278, 2776, 2838
Mox20I TGGCCA 1 cut(s) 2589
Mph1103I ATGCAT 1 cut(s) 1740
MroI TCCGGA 3 cut(s) 8, 384, 1708
MroXI GAANNNNTTC 2 cut(s) 239, 2201
MscI TGGCCA 1 cut(s) 2589
MslI CAYNNNNRTG 4 cut(s) 779, 840, 1351, 2447
Msp20I TGGCCA 1 cut(s) 2589
MspA1I CMGCKG 2 cut(s) 1589, 3070
MspR9I CCNGG 6 cut(s) 747, 1007, 1581, 2432, 3143, 3276
Mva1269I GAATGC 2 cut(s) 1740, 2251
MvaI CCWGG 5 cut(s) 747, 1007, 2432, 3143, 3276
MvnI CGCG 3 cut(s) 713, 1329, 3023
NciI CCSGG 1 cut(s) 1581
NcoI CCATGG 1 cut(s) 1793
NlaIV GGNNCC 4 cut(s) 280, 575, 1059, 2538
NmuCI GTSAC 7 cut(s) 74, 770, 1070, 1370, 1427, 3077, 3491
NsiI ATGCAT 1 cut(s) 1740
NspI RCATGY 2 cut(s) 2530, 3313
NspV TTCGAA 1 cut(s) 213
OliI CACNNNNGTG 1 cut(s) 779
PaeI GCATGC 1 cut(s) 2530
PaeR7I CTCGAG 3 cut(s) 524, 543, 2678
PagI TCATGA 2 cut(s) 835, 2559
PaqCI CACCTGC 1 cut(s) 3315
PciI ACATGT 1 cut(s) 3309
PciSI GCTCTTC 1 cut(s) 747
PcsI WCGNNNNNNNCGW 3 cut(s) 122, 210, 325
PctI GAATGC 2 cut(s) 1740, 2251
PdmI GAANNNNTTC 2 cut(s) 239, 2201
Pfl23II CGTACG 1 cut(s) 273
PflFI GACNNNGTC 1 cut(s) 776
PfoI TCCNGGA 1 cut(s) 1005
PleI GAGTC 6 cut(s) 20, 192, 1367, 1407, 1794, 1841
PmaCI CACGTG 1 cut(s) 2424
PmlI CACGTG 1 cut(s) 2424
PpsI GAGTC 6 cut(s) 20, 192, 1367, 1407, 1794, 1841
Ppu21I YACGTR 1 cut(s) 2424
PpuMI RGGWCCY 1 cut(s) 2537
PscI ACATGT 1 cut(s) 3309
PshAI GACNNNNGTC 2 cut(s) 3060, 3469
PsiI TTATAA 2 cut(s) 828, 1127
Psp124BI GAGCTC 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 2537
Psp6I CCWGG 5 cut(s) 745, 1005, 2430, 3141, 3274
PspCI CACGTG 1 cut(s) 2424
PspGI CCWGG 5 cut(s) 745, 1005, 2430, 3141, 3274
PspLI CGTACG 1 cut(s) 273
PspN4I GGNNCC 4 cut(s) 280, 575, 1059, 2538
PspPI GGNCC 4 cut(s) 1003, 2537, 2881, 3420
PspPPI RGGWCCY 1 cut(s) 2537
PspXI VCTCGAGB 2 cut(s) 524, 2678
PsrI GAACNNNNNNTAC 2 cut(s) 3435, 3467
PstI CTGCAG 1 cut(s) 2736
PstNI CAGNNNCTG 2 cut(s) 1348, 3142
PsuI RGATCY 7 cut(s) 491, 573, 667, 1097, 2925, 2950, 3198
PsyI GACNNNGTC 1 cut(s) 776
PvuII CAGCTG 2 cut(s) 1589, 3070
RsaI GTAC 5 cut(s) 182, 275, 288, 2373, 3453
RsaNI GTAC 5 cut(s) 181, 274, 287, 2372, 3452
RseI CAYNNNNRTG 4 cut(s) 779, 840, 1351, 2447
SacI GAGCTC 1 cut(s) 515
SalI GTCGAC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 747
Sau96I GGNCC 4 cut(s) 1003, 2537, 2881, 3420
SchI GAGTC 6 cut(s) 21, 192, 1367, 1408, 1795, 1841
ScrFI CCNGG 6 cut(s) 747, 1007, 1581, 2432, 3143, 3276
SduI GDGCHC 3 cut(s) 515, 1060, 2726
SfcI CTRYAG 1 cut(s) 2732
Sfr274I CTCGAG 3 cut(s) 524, 543, 2678
SfuI TTCGAA 1 cut(s) 213
SgrDI CGTCGACG 1 cut(s) 188
SinI GGWCC 4 cut(s) 1003, 2537, 2881, 3420
SlaI CTCGAG 3 cut(s) 524, 543, 2678
SmiMI CAYNNNNRTG 4 cut(s) 779, 840, 1351, 2447
SmlI CTYRAG 7 cut(s) 452, 524, 543, 927, 2678, 2929, 3183
SmoI CTYRAG 7 cut(s) 452, 524, 543, 927, 2678, 2929, 3183
SpeI ACTAGT 1 cut(s) 2312
SphI GCATGC 1 cut(s) 2530
Sse9I AATT 5 cut(s) 171, 1295, 1386, 2400, 3257
SspMI CTAG 7 cut(s) 470, 657, 1164, 1482, 2313, 3299, 3480
SstI GAGCTC 1 cut(s) 515
StyD4I CCNGG 6 cut(s) 745, 1005, 1579, 2430, 3141, 3274
StyI CCWWGG 2 cut(s) 1793, 3004
TaiI ACGT 3 cut(s) 275, 2310, 2426
TasI AATT 5 cut(s) 171, 1295, 1386, 2400, 3257
TatI WGTACW 2 cut(s) 180, 2371
TauI GCSGC 2 cut(s) 1871, 3245
TscAI CASTG 7 cut(s) 157, 406, 781, 1353, 1558, 1675, 2482
TseFI GTSAC 7 cut(s) 74, 770, 1070, 1370, 1427, 3077, 3491
Tsp45I GTSAC 7 cut(s) 74, 770, 1070, 1370, 1427, 3077, 3491
TspGWI ACGGA 3 cut(s) 2612, 2770, 3065
TspRI CASTG 7 cut(s) 157, 406, 781, 1353, 1558, 1675, 2482
Tth111I GACNNNGTC 1 cut(s) 776
VpaK11BI GGWCC 4 cut(s) 1003, 2537, 2881, 3420
XapI RAATTY 1 cut(s) 3257
XceI RCATGY 2 cut(s) 2530, 3313
XcmI CCANNNNNNNNNTGG 1 cut(s) 3186
XhoI CTCGAG 3 cut(s) 524, 543, 2678
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 2 cut(s) 239, 2201
XspI CTAG 7 cut(s) 470, 657, 1164, 1482, 2313, 3299, 3480
Zsp2I ATGCAT 1 cut(s) 1740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.