Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18790 AT2G18790 AT4G16250 |
| fragaria_vesca | FvH4_4g19750 FvH4_4g19750 FvH4_4g19750 |
| malus_domestica | MD13G1153400.v1.1 MD16G1153800.v1.1 |
| prunus_persica | Prupe.1G117000_v2.0.a1 Prupe.1G117000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0425301 |
| rosa_laevigata | RLG00000007381 |
| rosa_multiflora | Rmu_sc0009125.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00367300 |
| rosa_rugosa | Rorug04G0202300 Rorug04G0202300 |
| rosa_samantha | Rh4AG259100 Rh4BG264900 Rh4CG276400 Rh4DG261000 |
| rosa_wichuraiana | Rw4G022430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2816 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2412 |
| Acc36I | ACCTGC | 2 cut(s) | 324, 3004 |
| Acc65I | GGTACC | 1 cut(s) | 1464 |
| AccB1I | GGYRCC | 1 cut(s) | 1464 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 794, 982 |
| AccI | GTMKAC | 3 cut(s) | 873, 2404, 2713 |
| AccII | CGCG | 2 cut(s) | 590, 2031 |
| AciI | CCGC | 5 cut(s) | 332, 590, 677, 1056, 2029 |
| AcoI | YGGCCR | 1 cut(s) | 232 |
| AcsI | RAATTY | 7 cut(s) | 219, 2432, 2480, 2802, 2873, 3006, 3137 |
| AcuI | CTGAAG | 6 cut(s) | 1154, 1395, 2022, 2271, 2775, 2985 |
| AcyI | GRCGYC | 1 cut(s) | 830 |
| AdeI | CACNNNGTG | 3 cut(s) | 112, 953, 2343 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 282, 794, 982, 1110, 1156, 2463, 2544, 2708, 3161 |
| AflIII | ACRYGT | 2 cut(s) | 1216, 2300 |
| AhlI | ACTAGT | 1 cut(s) | 2780 |
| AjnI | CCWGG | 5 cut(s) | 643, 1083, 1468, 2685, 3154 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 264, 296, 1995, 2027, 2865, 2897 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1523, 1555 |
| Alw21I | GWGCWC | 3 cut(s) | 16, 1824, 2094 |
| Alw26I | GTCTC | 9 cut(s) | 306, 603, 1066, 1728, 1748, 1853, 1946, 2732, 2771 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 62, 640, 928, 2400 |
| Ama87I | CYCGRG | 3 cut(s) | 309, 422, 441 |
| AoxI | GGCC | 9 cut(s) | 31, 232, 773, 1081, 1158, 1782, 2083, 2241, 3223 |
| ApoI | RAATTY | 7 cut(s) | 219, 2432, 2480, 2802, 2873, 3006, 3137 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 168, 200 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2877 |
| Asp718I | GGTACC | 1 cut(s) | 1464 |
| AspA2I | CCTAGG | 1 cut(s) | 3226 |
| AspLEI | GCGC | 5 cut(s) | 413, 574, 590, 1381, 2033 |
| AsuC2I | CCSGG | 3 cut(s) | 188, 857, 1963 |
| AsuHPI | GGTGA | 7 cut(s) | 761, 1466, 1805, 2243, 2560, 3005, 3170 |
| AsuNHI | GCTAGC | 1 cut(s) | 1009 |
| AvaI | CYCGRG | 3 cut(s) | 309, 422, 441 |
| AvaII | GGWCC | 6 cut(s) | 168, 565, 892, 1227, 1303, 2414 |
| AvrII | CCTAGG | 1 cut(s) | 3226 |
| AxyI | CCTNAGG | 1 cut(s) | 825 |
| BaeGI | GKGCMC | 2 cut(s) | 29, 958 |
| BalI | TGGCCA | 1 cut(s) | 234 |
| BamHI | GGATCC | 2 cut(s) | 471, 941 |
| BanI | GGYRCC | 1 cut(s) | 1464 |
| BanII | GRGCYC | 3 cut(s) | 442, 998, 1824 |
| BbsI | GAAGAC | 2 cut(s) | 2380, 3158 |
| Bbv12I | GWGCWC | 3 cut(s) | 16, 1824, 2094 |
| BbvCI | CCTCAGC | 1 cut(s) | 2927 |
| BccI | CCATC | 9 cut(s) | 253, 1498, 1607, 1889, 2252, 2840, 3064, 3107, 3155 |
| BceAI | ACGGC | 4 cut(s) | 95, 1656, 1666, 2885 |
| BciT130I | CCWGG | 5 cut(s) | 645, 1085, 1470, 2687, 3156 |
| BclI | TGATCA | 1 cut(s) | 2995 |
| BcnI | CCSGG | 3 cut(s) | 188, 857, 1963 |
| BcoDI | GTCTC | 9 cut(s) | 306, 603, 1066, 1728, 1748, 1853, 1946, 2732, 2771 |
| BcuI | ACTAGT | 1 cut(s) | 2780 |
| BfmI | CTRYAG | 5 cut(s) | 579, 632, 1884, 2131, 2742 |
| BfuAI | ACCTGC | 2 cut(s) | 324, 3004 |
| BlnI | CCTAGG | 1 cut(s) | 3226 |
| BlpI | GCTNAGC | 1 cut(s) | 1823 |
| BmcAI | AGTACT | 1 cut(s) | 1349 |
| Bme1390I | CCNGG | 8 cut(s) | 188, 645, 857, 1085, 1470, 1963, 2687, 3156 |
| Bme18I | GGWCC | 6 cut(s) | 168, 565, 892, 1227, 1303, 2414 |
| BmeT110I | CYCGRG | 3 cut(s) | 309, 422, 441 |
| BmrFI | CCNGG | 8 cut(s) | 188, 645, 857, 1085, 1470, 1963, 2687, 3156 |
| BmrI | ACTGGG | 2 cut(s) | 970, 2349 |
| BmtI | GCTAGC | 1 cut(s) | 1013 |
| BmuI | ACTGGG | 2 cut(s) | 970, 2349 |
| BoxI | GACNNNNGTC | 1 cut(s) | 383 |
| BpiI | GAAGAC | 2 cut(s) | 2380, 3158 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 303, 335, 1811, 1843 |
| BpmI | CTGGAG | 5 cut(s) | 391, 1491, 1820, 2876, 3045 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2927 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1823 |
| BpuEI | CTTGAG | 3 cut(s) | 2393, 2882, 3341 |
| BpuMI | CCSGG | 3 cut(s) | 188, 857, 1963 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2826 |
| BsaHI | GRCGYC | 1 cut(s) | 830 |
| BsaI | GGTCTC | 2 cut(s) | 306, 1946 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1391, 1421 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 282, 794, 982, 1110, 1156, 2463, 2544, 2708, 3161 |
| Bse118I | RCCGGY | 2 cut(s) | 584, 889 |
| Bse1I | ACTGG | 6 cut(s) | 706, 976, 1564, 2194, 2344, 2859 |
| Bse21I | CCTNAGG | 1 cut(s) | 825 |
| Bse3DI | GCAATG | 3 cut(s) | 75, 288, 999 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2826 |
| BseBI | CCWGG | 5 cut(s) | 645, 1085, 1470, 2687, 3156 |
| BseJI | GATNNNNATC | 1 cut(s) | 2826 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 282, 794, 982, 1110, 1156, 2463, 2544, 2708, 3161 |
| BseMI | GCAATG | 3 cut(s) | 75, 288, 999 |
| BseNI | ACTGG | 6 cut(s) | 706, 976, 1564, 2194, 2344, 2859 |
| BseRI | GAGGAG | 2 cut(s) | 2055, 3162 |
| BseSI | GKGCMC | 2 cut(s) | 29, 958 |
| BseYI | CCCAGC | 3 cut(s) | 1267, 1460, 1785 |
| BsgI | GTGCAG | 4 cut(s) | 89, 785, 1311, 3262 |
| Bsh1236I | CGCG | 2 cut(s) | 590, 2031 |
| BshFI | GGCC | 9 cut(s) | 33, 234, 775, 1083, 1160, 1784, 2085, 2243, 3225 |
| BshNI | GGYRCC | 1 cut(s) | 1464 |
| BsiHKAI | GWGCWC | 3 cut(s) | 16, 1824, 2094 |
| BsiHKCI | CYCGRG | 3 cut(s) | 309, 422, 441 |
| BsiSI | CCGG | 5 cut(s) | 188, 585, 856, 890, 1962 |
| BslFI | GGGAC | 3 cut(s) | 170, 391, 665 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 282, 794, 982, 1110, 1156, 2463, 2544, 2708, 3161 |
| BsmAI | GTCTC | 9 cut(s) | 306, 603, 1066, 1728, 1748, 1853, 1946, 2732, 2771 |
| BsmFI | GGGAC | 3 cut(s) | 170, 391, 665 |
| BsmI | GAATGC | 2 cut(s) | 1116, 1921 |
| BsnI | GGCC | 9 cut(s) | 33, 234, 775, 1083, 1160, 1784, 2085, 2243, 3225 |
| Bso31I | GGTCTC | 2 cut(s) | 306, 1946 |
| BsoBI | CYCGRG | 3 cut(s) | 309, 422, 441 |
| Bsp1286I | GDGCHC | 7 cut(s) | 16, 29, 442, 958, 998, 1824, 2094 |
| Bsp1407I | TGTACA | 1 cut(s) | 2518 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1823 |
| Bsp19I | CCATGG | 3 cut(s) | 1417, 2325, 2350 |
| BspACI | CCGC | 5 cut(s) | 332, 590, 677, 1056, 2029 |
| BspANI | GGCC | 9 cut(s) | 33, 234, 775, 1083, 1160, 1784, 2085, 2243, 3225 |
| BspFNI | CGCG | 2 cut(s) | 590, 2031 |
| BspHI | TCATGA | 4 cut(s) | 733, 1978, 2436, 3261 |
| BspMAI | CTGCAG | 1 cut(s) | 636 |
| BspMI | ACCTGC | 2 cut(s) | 324, 3004 |
| BspOI | GCTAGC | 1 cut(s) | 1013 |
| BspQI | GCTCTTC | 1 cut(s) | 1642 |
| BspT107I | GGYRCC | 1 cut(s) | 1464 |
| BspTNI | GGTCTC | 2 cut(s) | 306, 1946 |
| BsrDI | GCAATG | 3 cut(s) | 75, 288, 999 |
| BsrFI | RCCGGY | 2 cut(s) | 584, 889 |
| BsrGI | TGTACA | 1 cut(s) | 2518 |
| BsrI | ACTGG | 6 cut(s) | 706, 976, 1564, 2194, 2344, 2859 |
| BssAI | RCCGGY | 2 cut(s) | 584, 889 |
| BssNAI | GTATAC | 1 cut(s) | 2714 |
| BssNI | GRCGYC | 1 cut(s) | 830 |
| BssT1I | CCWWGG | 7 cut(s) | 1339, 1417, 1971, 2325, 2350, 2362, 3226 |
| Bst1107I | GTATAC | 1 cut(s) | 2714 |
| Bst2UI | CCWGG | 5 cut(s) | 645, 1085, 1470, 2687, 3156 |
| Bst4CI | ACNGT | 2 cut(s) | 91, 878 |
| Bst6I | CTCTTC | 2 cut(s) | 401, 1642 |
| BstACI | GRCGYC | 1 cut(s) | 830 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 640, 1925 |
| BstAUI | TGTACA | 1 cut(s) | 2518 |
| BstC8I | GCNNGC | 8 cut(s) | 108, 552, 586, 1011, 1158, 1273, 1782, 2128 |
| BstDSI | CCRYGG | 5 cut(s) | 813, 1417, 1682, 2325, 2350 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1154 |
| BstFNI | CGCG | 2 cut(s) | 590, 2031 |
| BstHHI | GCGC | 5 cut(s) | 413, 574, 590, 1381, 2033 |
| BstMAI | GTCTC | 9 cut(s) | 306, 603, 1066, 1728, 1748, 1853, 1946, 2732, 2771 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 11, 437, 617, 640, 922, 1010, 1786, 1925 |
| BstNI | CCWGG | 5 cut(s) | 645, 1085, 1470, 2687, 3156 |
| BstNSI | RCATGY | 3 cut(s) | 1220, 2304, 3241 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 383 |
| BstSCI | CCNGG | 8 cut(s) | 186, 643, 855, 1083, 1468, 1961, 2685, 3154 |
| BstSFI | CTRYAG | 5 cut(s) | 579, 632, 1884, 2131, 2742 |
| BstSLI | GKGCMC | 2 cut(s) | 29, 958 |
| BstUI | CGCG | 2 cut(s) | 590, 2031 |
| BstV2I | GAAGAC | 2 cut(s) | 2380, 3158 |
| BstX2I | RGATCY | 4 cut(s) | 363, 471, 941, 2938 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3069 |
| BstYI | RGATCY | 4 cut(s) | 363, 471, 941, 2938 |
| BstZ17I | GTATAC | 1 cut(s) | 2714 |
| Bsu36I | CCTNAGG | 1 cut(s) | 825 |
| BsuRI | GGCC | 9 cut(s) | 33, 234, 775, 1083, 1160, 1784, 2085, 2243, 3225 |
| BtgI | CCRYGG | 5 cut(s) | 813, 1417, 1682, 2325, 2350 |
| BtgZI | GCGATG | 1 cut(s) | 1503 |
| BtsI | GCAGTG | 3 cut(s) | 618, 638, 2319 |
| BtsIMutI | CAGTG | 6 cut(s) | 618, 638, 1557, 2319, 2337, 2852 |
| BveI | ACCTGC | 2 cut(s) | 324, 3004 |
| Cac8I | GCNNGC | 8 cut(s) | 108, 552, 586, 1011, 1158, 1273, 1782, 2128 |
| CaiI | CAGNNNCTG | 4 cut(s) | 62, 640, 928, 2400 |
| CciI | TCATGA | 4 cut(s) | 733, 1978, 2436, 3261 |
| CfoI | GCGC | 5 cut(s) | 413, 574, 590, 1381, 2033 |
| Cfr10I | RCCGGY | 2 cut(s) | 584, 889 |
| CseI | GACGC | 1 cut(s) | 819 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1561, 1596 |
| DraI | TTTAAA | 1 cut(s) | 3255 |
| DraIII | CACNNNGTG | 3 cut(s) | 112, 953, 2343 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2412 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2412 |
| EaeI | YGGCCR | 1 cut(s) | 232 |
| Eam1104I | CTCTTC | 2 cut(s) | 401, 1642 |
| EarI | CTCTTC | 2 cut(s) | 401, 1642 |
| Ecl136II | GAGCTC | 1 cut(s) | 1822 |
| Eco130I | CCWWGG | 7 cut(s) | 1339, 1417, 1971, 2325, 2350, 2362, 3226 |
| Eco147I | AGGCCT | 2 cut(s) | 775, 1160 |
| Eco24I | GRGCYC | 3 cut(s) | 442, 998, 1824 |
| Eco31I | GGTCTC | 2 cut(s) | 306, 1946 |
| Eco47I | GGWCC | 6 cut(s) | 168, 565, 892, 1227, 1303, 2414 |
| Eco53kI | GAGCTC | 1 cut(s) | 1822 |
| Eco57I | CTGAAG | 6 cut(s) | 1154, 1395, 2022, 2271, 2775, 2985 |
| Eco81I | CCTNAGG | 1 cut(s) | 825 |
| Eco88I | CYCGRG | 3 cut(s) | 309, 422, 441 |
| EcoICRI | GAGCTC | 1 cut(s) | 1822 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1154 |
| EcoO109I | RGGNCCY | 4 cut(s) | 565, 1081, 1227, 3223 |
| EcoRI | GAATTC | 4 cut(s) | 219, 2873, 3006, 3137 |
| EcoRII | CCWGG | 5 cut(s) | 643, 1083, 1468, 2685, 3154 |
| EcoT14I | CCWWGG | 7 cut(s) | 1339, 1417, 1971, 2325, 2350, 2362, 3226 |
| EcoT22I | ATGCAT | 1 cut(s) | 1629 |
| EcoT38I | GRGCYC | 3 cut(s) | 442, 998, 1824 |
| ErhI | CCWWGG | 7 cut(s) | 1339, 1417, 1971, 2325, 2350, 2362, 3226 |
| FaqI | GGGAC | 3 cut(s) | 170, 391, 665 |
| FauI | CCCGC | 1 cut(s) | 1049 |
| FbaI | TGATCA | 1 cut(s) | 2995 |
| FblI | GTMKAC | 3 cut(s) | 873, 2404, 2713 |
| FriOI | GRGCYC | 3 cut(s) | 442, 998, 1824 |
| GlaI | GCGC | 5 cut(s) | 412, 573, 589, 1380, 2032 |
| GsaI | CCCAGC | 3 cut(s) | 1271, 1464, 1789 |
| GsuI | CTGGAG | 5 cut(s) | 391, 1491, 1820, 2876, 3045 |
| HaeIII | GGCC | 9 cut(s) | 33, 234, 775, 1083, 1160, 1784, 2085, 2243, 3225 |
| HapII | CCGG | 5 cut(s) | 188, 585, 856, 890, 1962 |
| HgaI | GACGC | 1 cut(s) | 819 |
| HhaI | GCGC | 5 cut(s) | 413, 574, 590, 1381, 2033 |
| Hin1I | GRCGYC | 1 cut(s) | 830 |
| Hin6I | GCGC | 5 cut(s) | 411, 572, 588, 1379, 2031 |
| HinP1I | GCGC | 5 cut(s) | 411, 572, 588, 1379, 2031 |
| HincII | GTYRAC | 2 cut(s) | 1935, 2405 |
| HindII | GTYRAC | 2 cut(s) | 1935, 2405 |
| HindIII | AAGCTT | 1 cut(s) | 3094 |
| HpaII | CCGG | 5 cut(s) | 188, 585, 856, 890, 1962 |
| HphI | GGTGA | 7 cut(s) | 761, 1466, 1805, 2243, 2560, 3005, 3170 |
| Hpy166II | GTNNAC | 9 cut(s) | 87, 268, 392, 874, 1935, 1990, 2405, 2551, 2714 |
| Hpy8I | GTNNAC | 9 cut(s) | 87, 268, 392, 874, 1935, 1990, 2405, 2551, 2714 |
| Hpy99I | CGWCG | 3 cut(s) | 25, 95, 835 |
| HpyAV | CCTTC | 5 cut(s) | 154, 905, 1139, 2552, 3059 |
| HpyCH4III | ACNGT | 2 cut(s) | 91, 878 |
| HpyCH4IV | ACGT | 2 cut(s) | 2184, 3046 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 11, 437, 617, 640, 922, 1010, 1786, 1925 |
| HpySE526I | ACGT | 2 cut(s) | 2184, 3046 |
| Hsp92I | GRCGYC | 1 cut(s) | 830 |
| HspAI | GCGC | 5 cut(s) | 411, 572, 588, 1379, 2031 |
| KpnI | GGTACC | 1 cut(s) | 1468 |
| KroI | GCCGGC | 1 cut(s) | 584 |
| KroNI | GCCGGC | 1 cut(s) | 586 |
| Ksp22I | TGATCA | 1 cut(s) | 2995 |
| LguI | GCTCTTC | 1 cut(s) | 1642 |
| MaeII | ACGT | 2 cut(s) | 2184, 3046 |
| MaeIII | GTNAC | 9 cut(s) | 636, 968, 1259, 1279, 1316, 1363, 1774, 2185, 3118 |
| MfeI | CAATTG | 3 cut(s) | 372, 1202, 2945 |
| MflI | RGATCY | 4 cut(s) | 363, 471, 941, 2938 |
| MhlI | GDGCHC | 7 cut(s) | 16, 29, 442, 958, 998, 1824, 2094 |
| MlsI | TGGCCA | 1 cut(s) | 234 |
| MluNI | TGGCCA | 1 cut(s) | 234 |
| MlyI | GAGTC | 9 cut(s) | 68, 140, 173, 1228, 1730, 2400, 3126, 3208, 3299 |
| MmeI | TCCRAC | 3 cut(s) | 919, 2140, 2359 |
| Mox20I | TGGCCA | 1 cut(s) | 234 |
| Mph1103I | ATGCAT | 1 cut(s) | 1629 |
| MroNI | GCCGGC | 1 cut(s) | 584 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2877 |
| MscI | TGGCCA | 1 cut(s) | 234 |
| MslI | CAYNNNNRTG | 2 cut(s) | 738, 2324 |
| Msp20I | TGGCCA | 1 cut(s) | 234 |
| MspA1I | CMGCKG | 2 cut(s) | 631, 1271 |
| MspI | CCGG | 5 cut(s) | 188, 585, 856, 890, 1962 |
| MspR9I | CCNGG | 8 cut(s) | 188, 645, 857, 1085, 1470, 1963, 2687, 3156 |
| MunI | CAATTG | 3 cut(s) | 372, 1202, 2945 |
| Mva1269I | GAATGC | 2 cut(s) | 1116, 1921 |
| MvaI | CCWGG | 5 cut(s) | 645, 1085, 1470, 2687, 3156 |
| MvnI | CGCG | 2 cut(s) | 590, 2031 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 11, 437, 617, 640, 922, 1010, 1786, 1925 |
| NaeI | GCCGGC | 1 cut(s) | 586 |
| NciI | CCSGG | 3 cut(s) | 188, 857, 1963 |
| NcoI | CCATGG | 3 cut(s) | 1417, 2325, 2350 |
| NgoMIV | GCCGGC | 1 cut(s) | 584 |
| NheI | GCTAGC | 1 cut(s) | 1009 |
| NmeAIII | GCCGAG | 1 cut(s) | 79 |
| NmuCI | GTSAC | 6 cut(s) | 636, 968, 1259, 1316, 1363, 3118 |
| NsiI | ATGCAT | 1 cut(s) | 1629 |
| NspI | RCATGY | 3 cut(s) | 1220, 2304, 3241 |
| PaeR7I | CTCGAG | 1 cut(s) | 422 |
| PagI | TCATGA | 4 cut(s) | 733, 1978, 2436, 3261 |
| PceI | AGGCCT | 2 cut(s) | 775, 1160 |
| PciI | ACATGT | 2 cut(s) | 1216, 2300 |
| PciSI | GCTCTTC | 1 cut(s) | 1642 |
| PctI | GAATGC | 2 cut(s) | 1116, 1921 |
| PdiI | GCCGGC | 1 cut(s) | 586 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2877 |
| PfeI | GAWTC | 3 cut(s) | 1997, 2950, 3079 |
| PflFI | GACNNNGTC | 1 cut(s) | 182 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 794, 982 |
| PfoI | TCCNGGA | 1 cut(s) | 186 |
| PleI | GAGTC | 9 cut(s) | 67, 139, 173, 1228, 1730, 2400, 3125, 3208, 3298 |
| PpsI | GAGTC | 9 cut(s) | 67, 139, 173, 1228, 1730, 2400, 3125, 3208, 3298 |
| PpuMI | RGGWCCY | 2 cut(s) | 565, 1227 |
| PscI | ACATGT | 2 cut(s) | 1216, 2300 |
| PshAI | GACNNNNGTC | 1 cut(s) | 383 |
| PsiI | TTATAA | 1 cut(s) | 2816 |
| Psp124BI | GAGCTC | 1 cut(s) | 1824 |
| Psp5II | RGGWCCY | 2 cut(s) | 565, 1227 |
| Psp6I | CCWGG | 5 cut(s) | 643, 1083, 1468, 2685, 3154 |
| PspFI | CCCAGC | 3 cut(s) | 1267, 1460, 1785 |
| PspGI | CCWGG | 5 cut(s) | 643, 1083, 1468, 2685, 3154 |
| PspPPI | RGGWCCY | 2 cut(s) | 565, 1227 |
| PstI | CTGCAG | 1 cut(s) | 636 |
| PstNI | CAGNNNCTG | 4 cut(s) | 62, 640, 928, 2400 |
| PsuI | RGATCY | 4 cut(s) | 363, 471, 941, 2938 |
| PsyI | GACNNNGTC | 1 cut(s) | 182 |
| PvuII | CAGCTG | 2 cut(s) | 631, 1271 |
| RseI | CAYNNNNRTG | 2 cut(s) | 738, 2324 |
| SacI | GAGCTC | 1 cut(s) | 1824 |
| SalI | GTCGAC | 1 cut(s) | 2403 |
| SapI | GCTCTTC | 1 cut(s) | 1642 |
| ScaI | AGTACT | 1 cut(s) | 1349 |
| SchI | GAGTC | 9 cut(s) | 68, 140, 173, 1228, 1730, 2400, 3126, 3208, 3299 |
| ScrFI | CCNGG | 8 cut(s) | 188, 645, 857, 1085, 1470, 1963, 2687, 3156 |
| SduI | GDGCHC | 7 cut(s) | 16, 29, 442, 958, 998, 1824, 2094 |
| SfcI | CTRYAG | 5 cut(s) | 579, 632, 1884, 2131, 2742 |
| Sfr274I | CTCGAG | 1 cut(s) | 422 |
| SinI | GGWCC | 6 cut(s) | 168, 565, 892, 1227, 1303, 2414 |
| SlaI | CTCGAG | 1 cut(s) | 422 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 738, 2324 |
| SmlI | CTYRAG | 4 cut(s) | 422, 2408, 2861, 3320 |
| SmoI | CTYRAG | 4 cut(s) | 422, 2408, 2861, 3320 |
| SpeI | ACTAGT | 1 cut(s) | 2780 |
| SseBI | AGGCCT | 2 cut(s) | 775, 1160 |
| SsiI | CCGC | 5 cut(s) | 332, 590, 677, 1056, 2029 |
| SstI | GAGCTC | 1 cut(s) | 1824 |
| StuI | AGGCCT | 2 cut(s) | 775, 1160 |
| StyD4I | CCNGG | 8 cut(s) | 186, 643, 855, 1083, 1468, 1961, 2685, 3154 |
| StyI | CCWWGG | 7 cut(s) | 1339, 1417, 1971, 2325, 2350, 2362, 3226 |
| TaaI | ACNGT | 2 cut(s) | 91, 878 |
| TaiI | ACGT | 2 cut(s) | 2187, 3049 |
| TaqI | TCGA | 8 cut(s) | 93, 147, 321, 351, 423, 833, 1950, 2404 |
| TaqII | GACCGA | 1 cut(s) | 2517 |
| TatI | WGTACW | 4 cut(s) | 84, 1347, 2518, 3341 |
| TauI | GCSGC | 1 cut(s) | 334 |
| TfiI | GAWTC | 3 cut(s) | 1997, 2950, 3079 |
| TscAI | CASTG | 6 cut(s) | 618, 645, 1564, 2326, 2344, 2859 |
| TseFI | GTSAC | 6 cut(s) | 636, 968, 1259, 1316, 1363, 3118 |
| Tsp45I | GTSAC | 6 cut(s) | 636, 968, 1259, 1316, 1363, 3118 |
| TspGWI | ACGGA | 3 cut(s) | 377, 830, 1110 |
| TspRI | CASTG | 6 cut(s) | 618, 645, 1564, 2326, 2344, 2859 |
| Tth111I | GACNNNGTC | 1 cut(s) | 182 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 794, 982 |
| VpaK11BI | GGWCC | 6 cut(s) | 168, 565, 892, 1227, 1303, 2414 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1154 |
| XapI | RAATTY | 7 cut(s) | 219, 2432, 2480, 2802, 2873, 3006, 3137 |
| XceI | RCATGY | 3 cut(s) | 1220, 2304, 3241 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2731 |
| XhoI | CTCGAG | 1 cut(s) | 422 |
| XmaJI | CCTAGG | 1 cut(s) | 3226 |
| XmiI | GTMKAC | 3 cut(s) | 873, 2404, 2713 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2877 |
| ZrmI | AGTACT | 1 cut(s) | 1349 |
| Zsp2I | ATGCAT | 1 cut(s) | 1629 |