Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18790 AT2G18790 AT4G16250 |
| fragaria_vesca | FvH4_4g19750 FvH4_4g19750 FvH4_4g19750 |
| malus_domestica | MD13G1153400.v1.1 MD16G1153800.v1.1 |
| prunus_persica | Prupe.1G117000_v2.0.a1 Prupe.1G117000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0425301 |
| rosa_laevigata | RLG00000007381 |
| rosa_multiflora | Rmu_sc0009125.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00367300 |
| rosa_rugosa | Rorug04G0202300 Rorug04G0202300 |
| rosa_samantha | Rh4AG259100 Rh4BG264900 Rh4CG276400 Rh4DG261000 |
| rosa_wichuraiana | Rw4G022430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2858 |
| Acc36I | ACCTGC | 2 cut(s) | 366, 3046 |
| Acc65I | GGTACC | 1 cut(s) | 1506 |
| AccB1I | GGYRCC | 2 cut(s) | 62, 1506 |
| AccI | GTMKAC | 3 cut(s) | 138, 2446, 2755 |
| AccII | CGCG | 5 cut(s) | 155, 350, 352, 354, 1302 |
| AclWI | GGATC | 6 cut(s) | 400, 937, 991, 1587, 1845, 2305 |
| AcoI | YGGCCR | 4 cut(s) | 274, 651, 852, 2602 |
| AcsI | RAATTY | 8 cut(s) | 2255, 2474, 2711, 2844, 2915, 2980, 3048, 3179 |
| AcuI | CTGAAG | 3 cut(s) | 1437, 2064, 2817 |
| AcyI | GRCGYC | 1 cut(s) | 872 |
| AdeI | CACNNNGTG | 3 cut(s) | 157, 1529, 2385 |
| AfaI | GTAC | 8 cut(s) | 131, 251, 767, 1391, 1508, 2019, 2562, 3087 |
| AfeI | AGCGCT | 1 cut(s) | 1371 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 324, 429, 836, 1314, 1833, 1834, 2750, 3203 |
| AflIII | ACRYGT | 3 cut(s) | 1258, 2342, 3231 |
| AgsI | TTSAA | 7 cut(s) | 76, 889, 1219, 2851, 2885, 3079, 3227 |
| AhlI | ACTAGT | 1 cut(s) | 2822 |
| AjnI | CCWGG | 4 cut(s) | 945, 1510, 2604, 3196 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2907, 2939 |
| AleI | CACNNNNGTG | 1 cut(s) | 719 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 458, 490, 1565, 1597 |
| Alw21I | GWGCWC | 4 cut(s) | 299, 393, 789, 1866 |
| Alw26I | GTCTC | 6 cut(s) | 645, 1770, 1790, 1895, 2668, 2813 |
| Alw44I | GTGCAC | 1 cut(s) | 295 |
| AlwI | GGATC | 6 cut(s) | 400, 937, 991, 1587, 1845, 2305 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 649, 682, 1279 |
| Ama87I | CYCGRG | 3 cut(s) | 392, 483, 3362 |
| Aor51HI | AGCGCT | 1 cut(s) | 1371 |
| ApaLI | GTGCAC | 1 cut(s) | 295 |
| ApoI | RAATTY | 8 cut(s) | 2255, 2474, 2711, 2844, 2915, 2980, 3048, 3179 |
| AseI | ATTAAT | 1 cut(s) | 1071 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 473, 2711, 3207 |
| Asp718I | GGTACC | 1 cut(s) | 1506 |
| AspA2I | CCTAGG | 1 cut(s) | 3268 |
| AspLEI | GCGC | 6 cut(s) | 127, 352, 354, 482, 1000, 1372 |
| AspS9I | GGNCC | 6 cut(s) | 420, 607, 630, 1825, 2126, 3265 |
| AsuC2I | CCSGG | 3 cut(s) | 611, 628, 687 |
| AsuHPI | GGTGA | 9 cut(s) | 121, 913, 1399, 1541, 1624, 2285, 2602, 3047, 3212 |
| AvaI | CYCGRG | 3 cut(s) | 392, 483, 3362 |
| AvaII | GGWCC | 2 cut(s) | 420, 607 |
| AvrII | CCTAGG | 1 cut(s) | 3268 |
| AxyI | CCTNAGG | 3 cut(s) | 428, 867, 1641 |
| BaeGI | GKGCMC | 2 cut(s) | 65, 299 |
| BanI | GGYRCC | 2 cut(s) | 62, 1506 |
| BanII | GRGCYC | 3 cut(s) | 1040, 1866, 1986 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2904, 2936 |
| BbsI | GAAGAC | 1 cut(s) | 3200 |
| Bbv12I | GWGCWC | 4 cut(s) | 299, 393, 789, 1866 |
| BbvCI | CCTCAGC | 1 cut(s) | 2969 |
| BccI | CCATC | 8 cut(s) | 1146, 1355, 1540, 1649, 2882, 3106, 3149, 3243 |
| BceAI | ACGGC | 8 cut(s) | 261, 290, 523, 617, 638, 1698, 2376, 2617 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2975, 3009 |
| BciT130I | CCWGG | 4 cut(s) | 947, 1512, 2606, 3198 |
| BciVI | GTATCC | 1 cut(s) | 507 |
| BclI | TGATCA | 1 cut(s) | 3037 |
| BcnI | CCSGG | 3 cut(s) | 611, 628, 687 |
| BcoDI | GTCTC | 6 cut(s) | 645, 1770, 1790, 1895, 2668, 2813 |
| BcuI | ACTAGT | 1 cut(s) | 2822 |
| BfaI | CTAG | 9 cut(s) | 597, 1335, 2175, 2640, 2700, 2823, 3023, 3269, 3403 |
| BfmI | CTRYAG | 9 cut(s) | 337, 621, 674, 1211, 1926, 2001, 2630, 2651, 2784 |
| BfoI | RGCGCY | 2 cut(s) | 483, 1373 |
| BfuAI | ACCTGC | 2 cut(s) | 366, 3046 |
| BfuI | GTATCC | 1 cut(s) | 507 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 659 |
| BlnI | CCTAGG | 1 cut(s) | 3268 |
| BlpI | GCTNAGC | 1 cut(s) | 1865 |
| BmcAI | AGTACT | 1 cut(s) | 1391 |
| Bme1390I | CCNGG | 7 cut(s) | 611, 628, 687, 947, 1512, 2606, 3198 |
| Bme18I | GGWCC | 2 cut(s) | 420, 607 |
| BmeT110I | CYCGRG | 3 cut(s) | 392, 483, 3362 |
| BmgT120I | GGNCC | 6 cut(s) | 420, 607, 630, 1825, 2126, 3265 |
| BmrFI | CCNGG | 7 cut(s) | 611, 628, 687, 947, 1512, 2606, 3198 |
| BmrI | ACTGGG | 4 cut(s) | 370, 753, 1323, 2391 |
| BmuI | ACTGGG | 4 cut(s) | 370, 753, 1323, 2391 |
| BpiI | GAAGAC | 1 cut(s) | 3200 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1853, 1885 |
| BpmI | CTGGAG | 2 cut(s) | 485, 1533 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2969 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1865 |
| BpuEI | CTTGAG | 2 cut(s) | 2435, 2924 |
| BpuMI | CCSGG | 3 cut(s) | 611, 628, 687 |
| BsaHI | GRCGYC | 1 cut(s) | 872 |
| BsaWI | WCCGGW | 3 cut(s) | 176, 385, 2544 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 458, 488, 2052, 2082 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 324, 429, 836, 1314, 1833, 1834, 2750, 3203 |
| Bse118I | RCCGGY | 1 cut(s) | 931 |
| Bse1I | ACTGG | 5 cut(s) | 376, 748, 1318, 2236, 2386 |
| Bse21I | CCTNAGG | 3 cut(s) | 428, 867, 1641 |
| Bse3DI | GCAATG | 3 cut(s) | 330, 1041, 2696 |
| BseBI | CCWGG | 4 cut(s) | 947, 1512, 2606, 3198 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 324, 429, 836, 1314, 1833, 1834, 2750, 3203 |
| BseMI | GCAATG | 3 cut(s) | 330, 1041, 2696 |
| BseNI | ACTGG | 5 cut(s) | 376, 748, 1318, 2236, 2386 |
| BsePI | GCGCGC | 1 cut(s) | 350 |
| BseRI | GAGGAG | 4 cut(s) | 326, 2009, 2057, 2097 |
| BseSI | GKGCMC | 2 cut(s) | 65, 299 |
| BseYI | CCCAGC | 4 cut(s) | 36, 1502, 1827, 3111 |
| BsgI | GTGCAG | 4 cut(s) | 134, 656, 2478, 3304 |
| Bsh1236I | CGCG | 5 cut(s) | 155, 350, 352, 354, 1302 |
| Bsh1285I | CGRYCG | 1 cut(s) | 138 |
| BshNI | GGYRCC | 2 cut(s) | 62, 1506 |
| BsiEI | CGRYCG | 1 cut(s) | 138 |
| BsiHKAI | GWGCWC | 4 cut(s) | 299, 393, 789, 1866 |
| BsiHKCI | CYCGRG | 3 cut(s) | 392, 483, 3362 |
| BslFI | GGGAC | 6 cut(s) | 433, 1113, 1445, 1586, 1742, 2283 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 324, 429, 836, 1314, 1833, 1834, 2750, 3203 |
| BsmAI | GTCTC | 6 cut(s) | 645, 1770, 1790, 1895, 2668, 2813 |
| BsmFI | GGGAC | 6 cut(s) | 433, 1113, 1445, 1586, 1742, 2283 |
| BsmI | GAATGC | 2 cut(s) | 1158, 1963 |
| BsoBI | CYCGRG | 3 cut(s) | 392, 483, 3362 |
| Bsp1286I | GDGCHC | 7 cut(s) | 65, 299, 393, 789, 1040, 1866, 1986 |
| Bsp1407I | TGTACA | 2 cut(s) | 765, 2560 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1865 |
| Bsp19I | CCATGG | 3 cut(s) | 1003, 1724, 2367 |
| Bsp68I | TCGCGA | 1 cut(s) | 1302 |
| BspFNI | CGCG | 5 cut(s) | 155, 350, 352, 354, 1302 |
| BspHI | TCATGA | 4 cut(s) | 775, 1341, 2478, 3303 |
| BspMAI | CTGCAG | 3 cut(s) | 678, 2634, 2655 |
| BspMI | ACCTGC | 2 cut(s) | 366, 3046 |
| BspPI | GGATC | 6 cut(s) | 400, 937, 991, 1587, 1845, 2305 |
| BspQI | GCTCTTC | 1 cut(s) | 443 |
| BspT107I | GGYRCC | 2 cut(s) | 62, 1506 |
| BsrDI | GCAATG | 3 cut(s) | 330, 1041, 2696 |
| BsrFI | RCCGGY | 1 cut(s) | 931 |
| BsrGI | TGTACA | 2 cut(s) | 765, 2560 |
| BsrI | ACTGG | 5 cut(s) | 376, 748, 1318, 2236, 2386 |
| BssAI | RCCGGY | 1 cut(s) | 931 |
| BssHII | GCGCGC | 1 cut(s) | 350 |
| BssNAI | GTATAC | 1 cut(s) | 2756 |
| BssNI | GRCGYC | 1 cut(s) | 872 |
| BssT1I | CCWWGG | 5 cut(s) | 1003, 1724, 2013, 2367, 3268 |
| Bst1107I | GTATAC | 1 cut(s) | 2756 |
| Bst2UI | CCWGG | 4 cut(s) | 947, 1512, 2606, 3198 |
| Bst4CI | ACNGT | 5 cut(s) | 136, 718, 1215, 1490, 2053 |
| Bst6I | CTCTTC | 2 cut(s) | 443, 501 |
| BstACI | GRCGYC | 1 cut(s) | 872 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 682, 1666, 1967 |
| BstAUI | TGTACA | 2 cut(s) | 765, 2560 |
| BstDSI | CCRYGG | 6 cut(s) | 306, 855, 1003, 1724, 2367, 2392 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3201 |
| BstFNI | CGCG | 5 cut(s) | 155, 350, 352, 354, 1302 |
| BstH2I | RGCGCY | 2 cut(s) | 483, 1373 |
| BstHHI | GCGC | 6 cut(s) | 127, 352, 354, 482, 1000, 1372 |
| BstMAI | GTCTC | 6 cut(s) | 645, 1770, 1790, 1895, 2668, 2813 |
| BstMCI | CGRYCG | 1 cut(s) | 138 |
| BstNI | CCWGG | 4 cut(s) | 947, 1512, 2606, 3198 |
| BstNSI | RCATGY | 5 cut(s) | 1262, 2346, 3235, 3283, 3389 |
| BstSCI | CCNGG | 7 cut(s) | 609, 626, 685, 945, 1510, 2604, 3196 |
| BstSFI | CTRYAG | 9 cut(s) | 337, 621, 674, 1211, 1926, 2001, 2630, 2651, 2784 |
| BstSLI | GKGCMC | 2 cut(s) | 65, 299 |
| BstUI | CGCG | 5 cut(s) | 155, 350, 352, 354, 1302 |
| BstV2I | GAAGAC | 1 cut(s) | 3200 |
| BstX2I | RGATCY | 2 cut(s) | 405, 1837 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2612 |
| BstYI | RGATCY | 2 cut(s) | 405, 1837 |
| BstZ17I | GTATAC | 1 cut(s) | 2756 |
| Bsu36I | CCTNAGG | 3 cut(s) | 428, 867, 1641 |
| BsuI | GTATCC | 1 cut(s) | 507 |
| BtgI | CCRYGG | 6 cut(s) | 306, 855, 1003, 1724, 2367, 2392 |
| BtsI | GCAGTG | 2 cut(s) | 680, 2361 |
| BtsIMutI | CAGTG | 6 cut(s) | 680, 1413, 1482, 1878, 2361, 2379 |
| BtuMI | TCGCGA | 1 cut(s) | 1302 |
| BveI | ACCTGC | 2 cut(s) | 366, 3046 |
| CaiI | CAGNNNCTG | 3 cut(s) | 649, 682, 1279 |
| CciI | TCATGA | 4 cut(s) | 775, 1341, 2478, 3303 |
| CfoI | GCGC | 6 cut(s) | 127, 352, 354, 482, 1000, 1372 |
| Cfr10I | RCCGGY | 1 cut(s) | 931 |
| Cfr13I | GGNCC | 6 cut(s) | 420, 607, 630, 1825, 2126, 3265 |
| CseI | GACGC | 4 cut(s) | 149, 442, 861, 1035 |
| Csp6I | GTAC | 8 cut(s) | 130, 250, 766, 1390, 1507, 2018, 2561, 3086 |
| CviQI | GTAC | 8 cut(s) | 130, 250, 766, 1390, 1507, 2018, 2561, 3086 |
| DraIII | CACNNNGTG | 3 cut(s) | 157, 1529, 2385 |
| EaeI | YGGCCR | 4 cut(s) | 274, 651, 852, 2602 |
| Eam1104I | CTCTTC | 2 cut(s) | 443, 501 |
| EarI | CTCTTC | 2 cut(s) | 443, 501 |
| EciI | GGCGGA | 3 cut(s) | 30, 116, 818 |
| Ecl136II | GAGCTC | 1 cut(s) | 1864 |
| Eco130I | CCWWGG | 5 cut(s) | 1003, 1724, 2013, 2367, 3268 |
| Eco147I | AGGCCT | 1 cut(s) | 1202 |
| Eco24I | GRGCYC | 3 cut(s) | 1040, 1866, 1986 |
| Eco32I | GATATC | 1 cut(s) | 2401 |
| Eco47I | GGWCC | 2 cut(s) | 420, 607 |
| Eco47III | AGCGCT | 1 cut(s) | 1371 |
| Eco53kI | GAGCTC | 1 cut(s) | 1864 |
| Eco57I | CTGAAG | 3 cut(s) | 1437, 2064, 2817 |
| Eco81I | CCTNAGG | 3 cut(s) | 428, 867, 1641 |
| Eco88I | CYCGRG | 3 cut(s) | 392, 483, 3362 |
| EcoICRI | GAGCTC | 1 cut(s) | 1864 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3201 |
| EcoO109I | RGGNCCY | 2 cut(s) | 607, 3265 |
| EcoRI | GAATTC | 4 cut(s) | 2711, 2915, 3048, 3179 |
| EcoRII | CCWGG | 4 cut(s) | 945, 1510, 2604, 3196 |
| EcoRV | GATATC | 1 cut(s) | 2401 |
| EcoT14I | CCWWGG | 5 cut(s) | 1003, 1724, 2013, 2367, 3268 |
| EcoT22I | ATGCAT | 1 cut(s) | 1671 |
| EcoT38I | GRGCYC | 3 cut(s) | 1040, 1866, 1986 |
| ErhI | CCWWGG | 5 cut(s) | 1003, 1724, 2013, 2367, 3268 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2798, 2830 |
| FaqI | GGGAC | 6 cut(s) | 433, 1113, 1445, 1586, 1742, 2283 |
| FauI | CCCGC | 2 cut(s) | 393, 2322 |
| FauNDI | CATATG | 1 cut(s) | 2723 |
| FbaI | TGATCA | 1 cut(s) | 3037 |
| FblI | GTMKAC | 3 cut(s) | 138, 2446, 2755 |
| FriOI | GRGCYC | 3 cut(s) | 1040, 1866, 1986 |
| FspBI | CTAG | 9 cut(s) | 597, 1335, 2175, 2640, 2700, 2823, 3023, 3269, 3403 |
| GlaI | GCGC | 6 cut(s) | 126, 351, 353, 481, 999, 1371 |
| GsaI | CCCAGC | 4 cut(s) | 40, 1506, 1831, 3115 |
| GsuI | CTGGAG | 2 cut(s) | 485, 1533 |
| HaeII | RGCGCY | 2 cut(s) | 483, 1373 |
| HgaI | GACGC | 4 cut(s) | 149, 442, 861, 1035 |
| HhaI | GCGC | 6 cut(s) | 127, 352, 354, 482, 1000, 1372 |
| Hin1I | GRCGYC | 1 cut(s) | 872 |
| Hin6I | GCGC | 6 cut(s) | 125, 350, 352, 480, 998, 1370 |
| HinP1I | GCGC | 6 cut(s) | 125, 350, 352, 480, 998, 1370 |
| HincII | GTYRAC | 5 cut(s) | 139, 2056, 2447, 2793, 3400 |
| HindII | GTYRAC | 5 cut(s) | 139, 2056, 2447, 2793, 3400 |
| HindIII | AAGCTT | 1 cut(s) | 701 |
| HpaI | GTTAAC | 1 cut(s) | 2793 |
| HphI | GGTGA | 9 cut(s) | 121, 913, 1399, 1541, 1624, 2285, 2602, 3047, 3212 |
| Hpy99I | CGWCG | 6 cut(s) | 58, 61, 143, 460, 877, 1051 |
| HpyCH4III | ACNGT | 5 cut(s) | 136, 718, 1215, 1490, 2053 |
| HpyCH4IV | ACGT | 4 cut(s) | 458, 1675, 2865, 3088 |
| HpySE526I | ACGT | 4 cut(s) | 458, 1675, 2865, 3088 |
| Hsp92I | GRCGYC | 1 cut(s) | 872 |
| HspAI | GCGC | 6 cut(s) | 125, 350, 352, 480, 998, 1370 |
| KpnI | GGTACC | 1 cut(s) | 1510 |
| Ksp22I | TGATCA | 1 cut(s) | 3037 |
| KspAI | GTTAAC | 1 cut(s) | 2793 |
| LguI | GCTCTTC | 1 cut(s) | 443 |
| MaeI | CTAG | 9 cut(s) | 597, 1335, 2175, 2640, 2700, 2823, 3023, 3269, 3403 |
| MaeII | ACGT | 4 cut(s) | 458, 1675, 2865, 3088 |
| MaeIII | GTNAC | 5 cut(s) | 678, 710, 1405, 1816, 2227 |
| MauBI | CGCGCGCG | 1 cut(s) | 350 |
| MfeI | CAATTG | 2 cut(s) | 1398, 2987 |
| MflI | RGATCY | 2 cut(s) | 405, 1837 |
| MhlI | GDGCHC | 7 cut(s) | 65, 299, 393, 789, 1040, 1866, 1986 |
| MlyI | GAGTC | 8 cut(s) | 113, 182, 323, 1264, 1270, 1772, 2442, 3250 |
| MmeI | TCCRAC | 2 cut(s) | 961, 1230 |
| Mph1103I | ATGCAT | 1 cut(s) | 1671 |
| MroXI | GAANNNNTTC | 3 cut(s) | 473, 2711, 3207 |
| MslI | CAYNNNNRTG | 3 cut(s) | 719, 780, 2366 |
| MspA1I | CMGCKG | 1 cut(s) | 673 |
| MspR9I | CCNGG | 7 cut(s) | 611, 628, 687, 947, 1512, 2606, 3198 |
| MunI | CAATTG | 2 cut(s) | 1398, 2987 |
| Mva1269I | GAATGC | 2 cut(s) | 1158, 1963 |
| MvaI | CCWGG | 4 cut(s) | 947, 1512, 2606, 3198 |
| MvnI | CGCG | 5 cut(s) | 155, 350, 352, 354, 1302 |
| NciI | CCSGG | 3 cut(s) | 611, 628, 687 |
| NcoI | CCATGG | 3 cut(s) | 1003, 1724, 2367 |
| NdeI | CATATG | 1 cut(s) | 2723 |
| NmeAIII | GCCGAG | 1 cut(s) | 124 |
| NmuCI | GTSAC | 3 cut(s) | 678, 710, 1405 |
| NruI | TCGCGA | 1 cut(s) | 1302 |
| NsiI | ATGCAT | 1 cut(s) | 1671 |
| NspI | RCATGY | 5 cut(s) | 1262, 2346, 3235, 3283, 3389 |
| OliI | CACNNNNGTG | 1 cut(s) | 719 |
| PaeR7I | CTCGAG | 2 cut(s) | 392, 3362 |
| PagI | TCATGA | 4 cut(s) | 775, 1341, 2478, 3303 |
| PauI | GCGCGC | 1 cut(s) | 350 |
| PceI | AGGCCT | 1 cut(s) | 1202 |
| PciI | ACATGT | 3 cut(s) | 1258, 2342, 3231 |
| PciSI | GCTCTTC | 1 cut(s) | 443 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 159, 168 |
| PctI | GAATGC | 2 cut(s) | 1158, 1963 |
| PdmI | GAANNNNTTC | 3 cut(s) | 473, 2711, 3207 |
| PfeI | GAWTC | 9 cut(s) | 221, 1345, 2039, 2635, 2992, 3121, 3169, 3292, 3332 |
| PfoI | TCCNGGA | 1 cut(s) | 945 |
| PleI | GAGTC | 8 cut(s) | 112, 181, 322, 1264, 1270, 1772, 2442, 3250 |
| PpsI | GAGTC | 8 cut(s) | 112, 181, 322, 1264, 1270, 1772, 2442, 3250 |
| PpuMI | RGGWCCY | 1 cut(s) | 607 |
| PscI | ACATGT | 3 cut(s) | 1258, 2342, 3231 |
| PshBI | ATTAAT | 1 cut(s) | 1071 |
| PsiI | TTATAA | 1 cut(s) | 2858 |
| Psp124BI | GAGCTC | 1 cut(s) | 1866 |
| Psp5II | RGGWCCY | 1 cut(s) | 607 |
| Psp6I | CCWGG | 4 cut(s) | 945, 1510, 2604, 3196 |
| PspFI | CCCAGC | 4 cut(s) | 36, 1502, 1827, 3111 |
| PspGI | CCWGG | 4 cut(s) | 945, 1510, 2604, 3196 |
| PspPI | GGNCC | 6 cut(s) | 420, 607, 630, 1825, 2126, 3265 |
| PspPPI | RGGWCCY | 1 cut(s) | 607 |
| PstI | CTGCAG | 3 cut(s) | 678, 2634, 2655 |
| PstNI | CAGNNNCTG | 3 cut(s) | 649, 682, 1279 |
| PsuI | RGATCY | 2 cut(s) | 405, 1837 |
| PteI | GCGCGC | 1 cut(s) | 350 |
| PvuII | CAGCTG | 1 cut(s) | 673 |
| RruI | TCGCGA | 1 cut(s) | 1302 |
| RsaI | GTAC | 8 cut(s) | 131, 251, 767, 1391, 1508, 2019, 2562, 3087 |
| RsaNI | GTAC | 8 cut(s) | 130, 250, 766, 1390, 1507, 2018, 2561, 3086 |
| RseI | CAYNNNNRTG | 3 cut(s) | 719, 780, 2366 |
| SacI | GAGCTC | 1 cut(s) | 1866 |
| SalI | GTCGAC | 2 cut(s) | 137, 2445 |
| SapI | GCTCTTC | 1 cut(s) | 443 |
| Sau96I | GGNCC | 6 cut(s) | 420, 607, 630, 1825, 2126, 3265 |
| ScaI | AGTACT | 1 cut(s) | 1391 |
| SchI | GAGTC | 8 cut(s) | 113, 182, 323, 1264, 1270, 1772, 2442, 3250 |
| ScrFI | CCNGG | 7 cut(s) | 611, 628, 687, 947, 1512, 2606, 3198 |
| SduI | GDGCHC | 7 cut(s) | 65, 299, 393, 789, 1040, 1866, 1986 |
| SfcI | CTRYAG | 9 cut(s) | 337, 621, 674, 1211, 1926, 2001, 2630, 2651, 2784 |
| Sfr274I | CTCGAG | 2 cut(s) | 392, 3362 |
| SinI | GGWCC | 2 cut(s) | 420, 607 |
| SlaI | CTCGAG | 2 cut(s) | 392, 3362 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 719, 780, 2366 |
| SmlI | CTYRAG | 4 cut(s) | 392, 2450, 2903, 3362 |
| SmoI | CTYRAG | 4 cut(s) | 392, 2450, 2903, 3362 |
| SpeI | ACTAGT | 1 cut(s) | 2822 |
| SseBI | AGGCCT | 1 cut(s) | 1202 |
| SspMI | CTAG | 9 cut(s) | 597, 1335, 2175, 2640, 2700, 2823, 3023, 3269, 3403 |
| SstI | GAGCTC | 1 cut(s) | 1866 |
| StuI | AGGCCT | 1 cut(s) | 1202 |
| StyD4I | CCNGG | 7 cut(s) | 609, 626, 685, 945, 1510, 2604, 3196 |
| StyI | CCWWGG | 5 cut(s) | 1003, 1724, 2013, 2367, 3268 |
| TaaI | ACNGT | 5 cut(s) | 136, 718, 1215, 1490, 2053 |
| TaiI | ACGT | 4 cut(s) | 461, 1678, 2868, 3091 |
| TaqII | GACCGA | 1 cut(s) | 437 |
| TatI | WGTACW | 4 cut(s) | 129, 765, 1389, 2560 |
| TauI | GCSGC | 4 cut(s) | 30, 33, 36, 276 |
| TfiI | GAWTC | 9 cut(s) | 221, 1345, 2039, 2635, 2992, 3121, 3169, 3292, 3332 |
| TscAI | CASTG | 6 cut(s) | 687, 1420, 1489, 1878, 2368, 2386 |
| TseFI | GTSAC | 3 cut(s) | 678, 710, 1405 |
| Tsp45I | GTSAC | 3 cut(s) | 678, 710, 1405 |
| TspGWI | ACGGA | 5 cut(s) | 214, 872, 1117, 1152, 2531 |
| TspRI | CASTG | 6 cut(s) | 687, 1420, 1489, 1878, 2368, 2386 |
| VneI | GTGCAC | 1 cut(s) | 295 |
| VpaK11BI | GGWCC | 2 cut(s) | 420, 607 |
| VspI | ATTAAT | 1 cut(s) | 1071 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3201 |
| XapI | RAATTY | 8 cut(s) | 2255, 2474, 2711, 2844, 2915, 2980, 3048, 3179 |
| XceI | RCATGY | 5 cut(s) | 1262, 2346, 3235, 3283, 3389 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1048 |
| XhoI | CTCGAG | 2 cut(s) | 392, 3362 |
| XmaJI | CCTAGG | 1 cut(s) | 3268 |
| XmiI | GTMKAC | 3 cut(s) | 138, 2446, 2755 |
| XmnI | GAANNNNTTC | 3 cut(s) | 473, 2711, 3207 |
| XspI | CTAG | 9 cut(s) | 597, 1335, 2175, 2640, 2700, 2823, 3023, 3269, 3403 |
| ZrmI | AGTACT | 1 cut(s) | 1391 |
| Zsp2I | ATGCAT | 1 cut(s) | 1671 |