AT2G18910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016073
Physical Location & Seq
Reverse (-)
8192702 .. 8194396
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18910.1

Sequence Viewer

Length: 396 bp
ATGCCGATCAACAAAGACCCATCAACACCTCCTCCTGTTATCGGAAAAATCGGTCCTTACACTGTCTTTATGACTCCTCCTGCGACTCCTAAACCACCTGAATCTCCCTCCGCTGTGTCTCAGAAGCCTGTGATGGCACCACCGGTTCTTCCTCCGCCGCAGCAGTTTAAATCGGTGGCTTCTTCTGACCAGGACGGCTCAGTTTTGGGGTTCTTTAAAAACGCCGTCACAAAGGTTCAAAATGCACATTCAAGTGTGGATGATCATTTGGTGAGGTGGTTTGGGTTAAACCAATCTAAGTATCAGTGGGCTTTGGATGAGTACTACGAAAGCAAAGAATCAGATATGAAGACCGTGAAAGCAAAGGAGATGCCGGGGAAAGTACAGAGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.34

Weight (kDa)

8.8

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18910
fragaria_vesca FvH4_4g07900
malus_domestica MD13G1249500.v1.1 MD16G1255800.v1.1
prunus_persica Prupe.1G082700_v2.0.a1
pyrus_communis pycom13g21990 pycom16g21700
rosa_chinensis RchiOBHm_Chr4g0401201
rosa_laevigata RLG00000009156
rosa_rugosa Rorug04G0028900
rosa_samantha Rh4AG106400 Rh4BG101100 Rh4CG115400
rosa_wichuraiana Rw4G008610 Rw4G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 3 cut(s) 111, 155, 158
AfaI GTAC 2 cut(s) 323, 384
AfiI CCNNNNNNNGG 1 cut(s) 41
AgeI ACCGGT 1 cut(s) 142
AgsI TTSAA 2 cut(s) 239, 252
AjnI CCWGG 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 160
AsiGI ACCGGT 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 28, 127
BceAI ACGGC 2 cut(s) 209, 211
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 123
BisI GCNGC 2 cut(s) 158, 161
BlsI GCNGC 2 cut(s) 159, 162
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 2 cut(s) 191, 375
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 2 cut(s) 191, 375
BmsI GCATC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 142
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 2 cut(s) 265, 322
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 134, 213
BseRI GAGGAG 2 cut(s) 21, 66
BseXI GCAGC 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 142
BsiSI CCGG 2 cut(s) 143, 374
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 6, 262
BspACI CCGC 3 cut(s) 111, 155, 158
BspCNI CTCAG 2 cut(s) 133, 212
BspLI GGNNCC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 2 cut(s) 6, 262
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 64, 355
BstDEI CTNAG 3 cut(s) 120, 199, 297
BstF5I GGATG 2 cut(s) 265, 322
BstKTI GATC 2 cut(s) 9, 265
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 6, 262
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 2 cut(s) 189, 373
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 356
BtsCI GGATG 2 cut(s) 265, 322
BtsIMutI CAGTG 2 cut(s) 60, 311
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 322, 383
CspAI ACCGGT 1 cut(s) 142
CviJI RGCY 4 cut(s) 127, 179, 198, 311
CviKI_1 RGCY 4 cut(s) 127, 179, 198, 311
CviQI GTAC 2 cut(s) 322, 383
DdeI CTNAG 3 cut(s) 120, 199, 297
DpnI GATC 2 cut(s) 8, 264
DpnII GATC 2 cut(s) 6, 262
DraI TTTAAA 2 cut(s) 169, 217
EciI GGCGGA 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 189
FaiI YATR 3 cut(s) 71, 347, 394
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 158, 161
FokI GGATG 2 cut(s) 272, 329
Fsp4HI GCNGC 2 cut(s) 158, 161
GluI GCNGC 2 cut(s) 158, 161
HapII CCGG 2 cut(s) 143, 374
HinfI GANTC 4 cut(s) 73, 85, 101, 338
HpaII CCGG 2 cut(s) 143, 374
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 4 cut(s) 44, 123, 187, 343
HpyCH4III ACNGT 2 cut(s) 64, 355
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 3 cut(s) 120, 199, 297
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 6, 262
LpnPI CCDG 8 cut(s) 48, 93, 111, 141, 156, 176, 203, 387
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 8, 264
MboI GATC 2 cut(s) 6, 262
MboII GAAGA 3 cut(s) 140, 174, 361
MlyI GAGTC 2 cut(s) 67, 79
MnlI CCTC 6 cut(s) 39, 42, 87, 118, 162, 267
MseI TTAA 3 cut(s) 168, 216, 287
MslI CAYNNNNRTG 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 2 cut(s) 143, 374
MspR9I CCNGG 2 cut(s) 191, 375
MvaI CCWGG 1 cut(s) 191
NciI CCSGG 1 cut(s) 375
NdeII GATC 2 cut(s) 6, 262
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 101, 338
PinAI ACCGGT 1 cut(s) 142
PkrI GCNGC 2 cut(s) 159, 162
PleI GAGTC 2 cut(s) 67, 79
PpsI GAGTC 2 cut(s) 67, 79
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 53
RsaI GTAC 2 cut(s) 323, 384
RsaNI GTAC 2 cut(s) 322, 383
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 3 cut(s) 168, 216, 287
SatI GCNGC 2 cut(s) 158, 161
Sau3AI GATC 2 cut(s) 6, 262
Sau96I GGNCC 1 cut(s) 53
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 2 cut(s) 67, 79
ScrFI CCNGG 2 cut(s) 191, 375
SetI ASST 4 cut(s) 31, 100, 237, 278
SfaNI GCATC 1 cut(s) 360
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 252
SsiI CCGC 3 cut(s) 111, 155, 158
StyD4I CCNGG 2 cut(s) 189, 373
TaaI ACNGT 2 cut(s) 64, 355
TaqII GACCGA 1 cut(s) 41
TatI WGTACW 2 cut(s) 321, 382
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 2 cut(s) 101, 338
Tru1I TTAA 3 cut(s) 168, 216, 287
Tru9I TTAA 3 cut(s) 168, 216, 287
TscAI CASTG 2 cut(s) 67, 311
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 362
TspRI CASTG 2 cut(s) 67, 311
VpaK11BI GGWCC 1 cut(s) 53
ZrmI AGTACT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.