Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016073

Physical Location & Seq

Genomic Coordinates Reverse (-)

47729154 .. 47731900

Gene Structure 2747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTATCAACCGAGACTCCACTCCCCCACCAAAGATCGGCAAGATTGGGCCTTACACTGTGTTCATGACTCCACCCTCCACTCCAAAACCACCAGAAGAACAACAACAACAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAACCCATCTTTGATTCTCCCAAGAAAGTTGTCCTGCCTCCGGTTCAGCCGCCGCCTCAGCAGTTTGTGAAGCCGGTCGCCGGCGATGGCTCTGTTGTTGGGTTCTTCAAGAATGCTGTCACTAAAGTGCAGAATGCACATTCGAGTTTGGATGATCACTTGGCGCGCTGGTTTGGGTTGAACCAGTCAAAATATCAGTGGGCACTTGATGATTATTATGAGAGCAAGGGATTTGAAAAGGGCAATGCTAAAGCACAAGAGGTATCTGGCAAAATGCAGAGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM177

Protein Analysis

146

Amino Acids

16.26

Weight (kDa)

9.13

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18910
fragaria_vesca	FvH4_4g07900
malus_domestica	MD13G1249500.v1.1 MD16G1255800.v1.1
prunus_persica	Prupe.1G082700_v2.0.a1
pyrus_communis	pycom13g21990 pycom16g21700
rosa_chinensis	RchiOBHm_Chr4g0401201
rosa_laevigata	RLG00000009156
rosa_rugosa	Rorug04G0028900
rosa_samantha	Rh4AG106400 Rh4BG101100 Rh4CG115400
rosa_wichuraiana	Rw4G008610 Rw4G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	316
AciI	CCGC	2 cut(s)	200, 203
AfiI	CCNNNNNNNGG	3 cut(s)	38, 190, 230
AgsI	TTSAA	3 cut(s)	259, 331, 386
AleI	CACNNNNGTG	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	316, 318
AspS9I	GGNCC	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	164, 230
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	9
BisI	GCNGC	3 cut(s)	116, 200, 203
BlsI	GCNGC	3 cut(s)	117, 201, 204
BmgT120I	GGNCC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 190, 230
Bse118I	RCCGGY	2 cut(s)	223, 230
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	400
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	3 cut(s)	38, 190, 230
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	334
BsePI	GCGCGC	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	52
BsiEI	CGRYCG	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	191, 224, 231
BslI	CCNNNNNNNGG	3 cut(s)	38, 190, 230
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	2 cut(s)	268, 289
BsnI	GGCC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	36, 304
BspACI	CCGC	2 cut(s)	200, 203
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	2 cut(s)	223, 230
BsrI	ACTGG	1 cut(s)	334
BssAI	RCCGGY	2 cut(s)	223, 230
BssHII	GCGCGC	1 cut(s)	314
BssMI	GATC	2 cut(s)	36, 304
Bst4CI	ACNGT	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	232, 316
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	316
BstHHI	GCGC	2 cut(s)	316, 318
BstKTI	GATC	2 cut(s)	39, 307
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	36, 304
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 208
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	52
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	57, 353
Cac8I	GCNNGC	2 cut(s)	232, 316
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	2 cut(s)	316, 318
Cfr10I	RCCGGY	2 cut(s)	223, 230
Cfr13I	GGNCC	1 cut(s)	50
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	5 cut(s)	5, 52, 199, 223, 240
CviKI_1	RGCY	5 cut(s)	5, 52, 199, 223, 240
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	38, 306
DpnII	GATC	2 cut(s)	36, 304
FaeI	CATG	1 cut(s)	70
FaiI	YATR	3 cut(s)	68, 369, 436
FatI	CATG	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	116, 200, 203
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	116, 200, 203
GlaI	GCGC	2 cut(s)	315, 317
GluI	GCNGC	3 cut(s)	116, 200, 203
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	3 cut(s)	191, 224, 231
HhaI	GCGC	2 cut(s)	316, 318
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	2 cut(s)	314, 316
HinP1I	GCGC	2 cut(s)	314, 316
HinfI	GANTC	3 cut(s)	17, 70, 164
HpaII	CCGG	3 cut(s)	191, 224, 231
Hpy188III	TCNNGA	2 cut(s)	67, 259
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	280, 287, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 208
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	2 cut(s)	314, 316
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	36, 304
LpnPI	CCDG	8 cut(s)	108, 197, 204, 237, 244, 304, 347, 402
Lsp1109I	GCAGC	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	38, 306
MboI	GATC	2 cut(s)	36, 304
MboII	GAAGA	2 cut(s)	110, 247
MhlI	GDGCHC	1 cut(s)	355
MlyI	GAGTC	2 cut(s)	11, 64
MnlI	CCTC	4 cut(s)	88, 198, 216, 403
MreI	CGCCGGCG	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	275
MspI	CCGG	3 cut(s)	191, 224, 231
Mva1269I	GAATGC	2 cut(s)	268, 289
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	121, 208
NaeI	GCCGGC	1 cut(s)	232
NdeII	GATC	2 cut(s)	36, 304
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	268
OliI	CACNNNNGTG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	66
PauI	GCGCGC	1 cut(s)	314
PctI	GAATGC	2 cut(s)	268, 289
PdiI	GCCGGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	117, 201, 204
PleI	GAGTC	2 cut(s)	11, 64
PpsI	GAGTC	2 cut(s)	11, 64
PspPI	GGNCC	1 cut(s)	50
PteI	GCGCGC	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	3 cut(s)	116, 200, 203
Sau3AI	GATC	2 cut(s)	36, 304
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	11, 64
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	1 cut(s)	414
SgrAI	CRCCGGYG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	275
SsiI	CCGC	2 cut(s)	200, 203
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	293
TauI	GCSGC	2 cut(s)	202, 205
TfiI	GAWTC	1 cut(s)	164
TscAI	CASTG	2 cut(s)	64, 353
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	64, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.