Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016073

Physical Location & Seq

Genomic Coordinates Forward (+)

7469919 .. 7473205

Gene Structure 3287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCCATCAACCGAGACAACACTCCCCCACCTAAGATCGGCAAGATTGGGCCCTACACTGTGTTCATGACACCACCCTCCACTCCAAAGCCACTAGAAGAAGAAGAAGAAGACCAACAACAGCAAAAGCAGCCCGTGTTTGATTCACCCAAGAAAGTTGTCCTGCCTCCGGTGCAGCCGCCGCCTCAGCAGTTTGTGAAGCCGGTCGCCGCCGATGGCTCTGTTGTTGGCTTCTTCAAGAATGCTGTCACTAAAGTGCAGAATGCACATTCGAGTTTGGATGATCACTTGGCGCGCTGGTTTGGGTTGAACCAGTCAAAATATCAGTGGGCACTTGATGATTACTATGAGAGCAAGGGATTGGAAAAGGGCACTGCTAAAGCACAAGAGGTATCTAGCAAGATGCAGAGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM177

Protein Analysis

139

Amino Acids

15.38

Weight (kDa)

6.73

Isoelectric Point (pI)

58.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18910
fragaria_vesca	FvH4_4g07900
malus_domestica	MD13G1249500.v1.1 MD16G1255800.v1.1
prunus_persica	Prupe.1G082700_v2.0.a1
pyrus_communis	pycom13g21990 pycom16g21700
rosa_chinensis	RchiOBHm_Chr4g0401201
rosa_laevigata	RLG00000009156
rosa_rugosa	Rorug04G0028900
rosa_samantha	Rh4AG106400 Rh4BG101100 Rh4CG115400
rosa_wichuraiana	Rw4G008610 Rw4G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	295
AciI	CCGC	3 cut(s)	179, 182, 210
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	2 cut(s)	38, 169
AgsI	TTSAA	2 cut(s)	238, 310
AleI	CACNNNNGTG	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	2 cut(s)	3, 50
ApaI	GGGCCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	130, 175
AspLEI	GCGC	2 cut(s)	295, 297
AspS9I	GGNCC	2 cut(s)	50, 51
AsuHPI	GGTGA	1 cut(s)	138
BaeGI	GKGCMC	3 cut(s)	54, 334, 374
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	142, 187
BccI	CCATC	2 cut(s)	14, 209
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	95, 396
BisI	GCNGC	5 cut(s)	131, 176, 179, 182, 210
BlsI	GCNGC	5 cut(s)	132, 177, 180, 183, 211
BmgT120I	GGNCC	2 cut(s)	50, 51
BmiI	GGNNCC	1 cut(s)	52
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 169
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	38, 169
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	313
BsePI	GCGCGC	1 cut(s)	293
BseSI	GKGCMC	3 cut(s)	54, 334, 374
BseXI	GCAGC	2 cut(s)	142, 187
BsgI	GTGCAG	2 cut(s)	194, 278
Bsh1236I	CGCG	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	5, 52
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	170, 203
BslI	CCNNNNNNNGG	2 cut(s)	38, 169
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	2 cut(s)	247, 268
BsnI	GGCC	2 cut(s)	5, 52
Bsp120I	GGGCCC	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	54, 334, 374
Bsp143I	GATC	2 cut(s)	36, 283
BspACI	CCGC	3 cut(s)	179, 182, 210
BspANI	GGCC	2 cut(s)	5, 52
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	202
BssHII	GCGCGC	1 cut(s)	293
BssMI	GATC	2 cut(s)	36, 283
Bst4CI	ACNGT	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	33, 186
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	2 cut(s)	295, 297
BstKTI	GATC	2 cut(s)	39, 286
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	36, 283
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 172, 181, 187
BstSLI	GKGCMC	3 cut(s)	54, 334, 374
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	142, 187
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	5, 52
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	3 cut(s)	57, 332, 372
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	2 cut(s)	295, 297
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	50, 51
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	8 cut(s)	5, 52, 91, 133, 178, 202, 219, 231
CviKI_1	RGCY	8 cut(s)	5, 52, 91, 133, 178, 202, 219, 231
DdeI	CTNAG	2 cut(s)	33, 186
DpnI	GATC	2 cut(s)	38, 285
DpnII	GATC	2 cut(s)	36, 283
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	1 cut(s)	70
FaiI	YATR	3 cut(s)	68, 348, 415
FatI	CATG	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	5 cut(s)	131, 176, 179, 182, 210
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	5 cut(s)	131, 176, 179, 182, 210
FspBI	CTAG	2 cut(s)	95, 396
GlaI	GCGC	2 cut(s)	294, 296
GluI	GCNGC	5 cut(s)	131, 176, 179, 182, 210
HaeIII	GGCC	2 cut(s)	5, 52
HapII	CCGG	2 cut(s)	170, 203
HhaI	GCGC	2 cut(s)	295, 297
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	2 cut(s)	293, 295
HinP1I	GCGC	2 cut(s)	293, 295
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	2 cut(s)	170, 203
HphI	GGTGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	67, 238
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	4 cut(s)	175, 259, 266, 406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 172, 181, 187
HpyF3I	CTNAG	2 cut(s)	33, 186
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	2 cut(s)	293, 295
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	36, 283
LpnPI	CCDG	5 cut(s)	176, 183, 216, 283, 326
Lsp1109I	GCAGC	2 cut(s)	142, 187
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	2 cut(s)	95, 396
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	38, 285
MboI	GATC	2 cut(s)	36, 283
MboII	GAAGA	6 cut(s)	110, 113, 116, 119, 122, 226
MhlI	GDGCHC	3 cut(s)	54, 334, 374
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	88, 177, 195, 382
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	170, 203
Mva1269I	GAATGC	2 cut(s)	247, 268
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	4 cut(s)	130, 172, 181, 187
NdeII	GATC	2 cut(s)	36, 283
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	254
PagI	TCATGA	1 cut(s)	66
PauI	GCGCGC	1 cut(s)	293
PctI	GAATGC	2 cut(s)	247, 268
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	5 cut(s)	132, 177, 180, 183, 211
PspN4I	GGNNCC	1 cut(s)	52
PspOMI	GGGCCC	1 cut(s)	50
PspPI	GGNCC	2 cut(s)	50, 51
PteI	GCGCGC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	254
SatI	GCNGC	5 cut(s)	131, 176, 179, 182, 210
Sau3AI	GATC	2 cut(s)	36, 283
Sau96I	GGNCC	2 cut(s)	50, 51
SduI	GDGCHC	3 cut(s)	54, 334, 374
SetI	ASST	2 cut(s)	34, 393
SfaNI	GCATC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	254
SsiI	CCGC	3 cut(s)	179, 182, 210
SspMI	CTAG	2 cut(s)	95, 396
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	272
TauI	GCSGC	3 cut(s)	181, 184, 212
TfiI	GAWTC	1 cut(s)	143
TscAI	CASTG	3 cut(s)	64, 332, 379
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	130, 175
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	3 cut(s)	64, 332, 379
XspI	CTAG	2 cut(s)	95, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.