Rw4G008640

Wiskott-Aldrich syndrome protein family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0016073
Physical Location & Seq
Forward (+)
19006815 .. 19009512
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008640.1

Sequence Viewer

Length: 411 bp
ATGGCTATCAACCGAGACTCCACTCCCCCTCCAAAGATCGGCAAGATTGGGCCTTACACTGTGTTCATGACTCCACCCTCCACTCCAAAACCACCAGAAGAAGAACAACAGCAGCAACAGCAACAGCCCATCTTTGATTCTCCCAAGAAAGTTGTCCTGCCTCCGGTCCAGCCGCCGCCTCCGCAGTTTGTGAAGCCGGTCGCCGGCGATGGCACTGTTGTTGGGTTCTTCAAGAATGCTGTCACTAAAGTTCAGAATGCACATTCGAGTTTGGATGATCACTTGGCGCGCTGGTTTGGGTTGAACCAGTCAAAGTATCAGTGGGCACTTGATGATTATTATGAGAGCAAGGGATTGGAAAAGGGCAATGCTAAAGCACAAGAGGTATCTAGCAAAATGCAGAGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAM177

Protein Analysis

136

Amino Acids

15.09

Weight (kDa)

8.8

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18910
fragaria_vesca FvH4_4g07900
malus_domestica MD13G1249500.v1.1 MD16G1255800.v1.1
prunus_persica Prupe.1G082700_v2.0.a1
pyrus_communis pycom13g21990 pycom16g21700
rosa_chinensis RchiOBHm_Chr4g0401201
rosa_laevigata RLG00000009156
rosa_rugosa Rorug04G0028900
rosa_samantha Rh4AG106400 Rh4BG101100 Rh4CG115400
rosa_wichuraiana Rw4G008610 Rw4G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 289
AciI CCGC 3 cut(s) 173, 176, 182
AfiI CCNNNNNNNGG 3 cut(s) 38, 163, 203
AgsI TTSAA 2 cut(s) 232, 304
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 112
AspLEI GCGC 2 cut(s) 289, 291
AspS9I GGNCC 2 cut(s) 50, 166
AvaII GGWCC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 137, 203
BclI TGATCA 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 390
BisI GCNGC 3 cut(s) 113, 173, 176
BlsI GCNGC 3 cut(s) 114, 174, 177
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 50, 166
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 3 cut(s) 13, 32, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 163, 203
Bse118I RCCGGY 2 cut(s) 196, 203
Bse1I ACTGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 373
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 3 cut(s) 38, 163, 203
BseMI GCAATG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 307
BsePI GCGCGC 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 289
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 201
BsiSI CCGG 3 cut(s) 164, 197, 204
BslI CCNNNNNNNGG 3 cut(s) 38, 163, 203
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 2 cut(s) 241, 262
BsnI GGCC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 2 cut(s) 36, 277
BspACI CCGC 3 cut(s) 173, 176, 182
BspANI GGCC 1 cut(s) 52
BspFNI CGCG 1 cut(s) 289
BspHI TCATGA 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 2 cut(s) 196, 203
BsrI ACTGG 1 cut(s) 307
BssAI RCCGGY 2 cut(s) 196, 203
BssHII GCGCGC 1 cut(s) 287
BssMI GATC 2 cut(s) 36, 277
Bst4CI ACNGT 2 cut(s) 61, 217
BstC8I GCNNGC 2 cut(s) 205, 289
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 1 cut(s) 289
BstHHI GCGC 2 cut(s) 289, 291
BstKTI GATC 2 cut(s) 39, 280
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 36, 277
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 118, 181
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 52
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 3 cut(s) 57, 213, 326
Cac8I GCNNGC 2 cut(s) 205, 289
CciI TCATGA 1 cut(s) 66
CfoI GCGC 2 cut(s) 289, 291
Cfr10I RCCGGY 2 cut(s) 196, 203
Cfr13I GGNCC 2 cut(s) 50, 166
CviAII CATG 1 cut(s) 67
CviJI RGCY 5 cut(s) 5, 52, 127, 172, 196
CviKI_1 RGCY 5 cut(s) 5, 52, 127, 172, 196
DpnI GATC 2 cut(s) 38, 279
DpnII GATC 2 cut(s) 36, 277
Eco47I GGWCC 1 cut(s) 166
FaeI CATG 1 cut(s) 70
FaiI YATR 3 cut(s) 68, 342, 409
FatI CATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 113, 173, 176
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 3 cut(s) 113, 173, 176
FspBI CTAG 1 cut(s) 390
GlaI GCGC 2 cut(s) 288, 290
GluI GCNGC 3 cut(s) 113, 173, 176
HaeIII GGCC 1 cut(s) 52
HapII CCGG 3 cut(s) 164, 197, 204
HhaI GCGC 2 cut(s) 289, 291
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 2 cut(s) 287, 289
HinP1I GCGC 2 cut(s) 287, 289
HinfI GANTC 3 cut(s) 17, 70, 137
HpaII CCGG 3 cut(s) 164, 197, 204
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 2 cut(s) 67, 232
HpyCH4III ACNGT 2 cut(s) 61, 217
HpyCH4V TGCA 2 cut(s) 260, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 181
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 2 cut(s) 287, 289
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 2 cut(s) 36, 277
LpnPI CCDG 8 cut(s) 108, 170, 177, 182, 210, 217, 277, 320
Lsp1109I GCAGC 1 cut(s) 124
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 38, 279
MboI GATC 2 cut(s) 36, 277
MboII GAAGA 3 cut(s) 110, 113, 220
MhlI GDGCHC 1 cut(s) 328
MlyI GAGTC 2 cut(s) 11, 64
MnlI CCTC 5 cut(s) 39, 88, 171, 189, 376
MreI CGCCGGCG 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 203
MspI CCGG 3 cut(s) 164, 197, 204
Mva1269I GAATGC 2 cut(s) 241, 262
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 118, 181
NaeI GCCGGC 1 cut(s) 205
NdeII GATC 2 cut(s) 36, 277
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 241
PagI TCATGA 1 cut(s) 66
PauI GCGCGC 1 cut(s) 287
PctI GAATGC 2 cut(s) 241, 262
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 114, 174, 177
PleI GAGTC 2 cut(s) 11, 64
PpsI GAGTC 2 cut(s) 11, 64
PspPI GGNCC 2 cut(s) 50, 166
PteI GCGCGC 1 cut(s) 287
SatI GCNGC 3 cut(s) 113, 173, 176
Sau3AI GATC 2 cut(s) 36, 277
Sau96I GGNCC 2 cut(s) 50, 166
SchI GAGTC 2 cut(s) 11, 64
SduI GDGCHC 1 cut(s) 328
SetI ASST 1 cut(s) 387
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 1 cut(s) 166
SsiI CCGC 3 cut(s) 173, 176, 182
SspMI CTAG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 61, 217
TaqI TCGA 1 cut(s) 266
TauI GCSGC 2 cut(s) 175, 178
TfiI GAWTC 1 cut(s) 137
TscAI CASTG 3 cut(s) 64, 220, 326
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 3 cut(s) 64, 220, 326
VpaK11BI GGWCC 1 cut(s) 166
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.