Rh4AG106400

Wiskott-Aldrich syndrome protein family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
22898707 .. 22903881
5175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG106400.1

Sequence Viewer

Length: 297 bp
ATGGCTATCAACCGAGACTCCACTCCCCCTCCAAAGATCGGCAAGATTGGGCCTTACACTGTGTTCATGACTCCACCCTCCACTCCAAAACCACCAGAAGAAGAACAACAGCAGCAACAGCAACAACCCATCTTTGATTCTCCCAAGAAAGTTGTCCTGCCTCCGGTCCAGCCGCCGCCTCCGCAGTTTGTGAAGCCGGTCGCCGGCGATGGCTCTGTTGTTGGGTTCTTCAAGAATGCTGTCACTAAAGTTCAGAATGGTAATGCATGCTTTTCGTTCCTTTTGCTTTTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

10.69

Weight (kDa)

9.06

Isoelectric Point (pI)

63.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18910
fragaria_vesca FvH4_4g07900
malus_domestica MD13G1249500.v1.1 MD16G1255800.v1.1
prunus_persica Prupe.1G082700_v2.0.a1
pyrus_communis pycom13g21990 pycom16g21700
rosa_chinensis RchiOBHm_Chr4g0401201
rosa_laevigata RLG00000009156
rosa_rugosa Rorug04G0028900
rosa_samantha Rh4AG106400 Rh4BG101100 Rh4CG115400
rosa_wichuraiana Rw4G008610 Rw4G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 173, 176, 182
AfiI CCNNNNNNNGG 3 cut(s) 38, 163, 203
AgsI TTSAA 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 50, 166
AvaII GGWCC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 137, 203
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 3 cut(s) 113, 173, 176
BlsI GCNGC 3 cut(s) 114, 174, 177
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 50, 166
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 3 cut(s) 13, 32, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 163, 203
Bse118I RCCGGY 2 cut(s) 196, 203
BseLI CCNNNNNNNGG 3 cut(s) 38, 163, 203
BseXI GCAGC 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 201
BsiSI CCGG 3 cut(s) 164, 197, 204
BslI CCNNNNNNNGG 3 cut(s) 38, 163, 203
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 3 cut(s) 173, 176, 182
BspANI GGCC 1 cut(s) 52
BspHI TCATGA 1 cut(s) 66
BsrFI RCCGGY 2 cut(s) 196, 203
BssAI RCCGGY 2 cut(s) 196, 203
BssMI GATC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 205, 268
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 36
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 118, 181
BstNSI RCATGY 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 52
BtgZI GCGATG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 205, 268
CciI TCATGA 1 cut(s) 66
Cfr10I RCCGGY 2 cut(s) 196, 203
Cfr13I GGNCC 2 cut(s) 50, 166
CviAII CATG 2 cut(s) 67, 267
CviJI RGCY 5 cut(s) 5, 52, 172, 196, 213
CviKI_1 RGCY 5 cut(s) 5, 52, 172, 196, 213
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 268
FaeI CATG 2 cut(s) 70, 270
FaiI YATR 2 cut(s) 68, 268
FatI CATG 2 cut(s) 66, 266
Fnu4HI GCNGC 3 cut(s) 113, 173, 176
Fsp4HI GCNGC 3 cut(s) 113, 173, 176
GluI GCNGC 3 cut(s) 113, 173, 176
HaeIII GGCC 1 cut(s) 52
HapII CCGG 3 cut(s) 164, 197, 204
Hin1II CATG 2 cut(s) 70, 270
HinfI GANTC 3 cut(s) 17, 70, 137
HpaII CCGG 3 cut(s) 164, 197, 204
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 2 cut(s) 67, 232
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 181
Hsp92II CATG 2 cut(s) 70, 270
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 6 cut(s) 108, 170, 177, 182, 210, 217
Lsp1109I GCAGC 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 3 cut(s) 110, 113, 220
MlyI GAGTC 2 cut(s) 11, 64
MnlI CCTC 4 cut(s) 39, 88, 171, 189
Mph1103I ATGCAT 1 cut(s) 268
MreI CGCCGGCG 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 203
MseI TTAA 1 cut(s) 295
MspI CCGG 3 cut(s) 164, 197, 204
Mva1269I GAATGC 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 118, 181
NaeI GCCGGC 1 cut(s) 205
NdeII GATC 1 cut(s) 36
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 2 cut(s) 70, 270
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 1 cut(s) 270
PaeI GCATGC 1 cut(s) 270
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 114, 174, 177
PleI GAGTC 2 cut(s) 11, 64
PpsI GAGTC 2 cut(s) 11, 64
PspPI GGNCC 2 cut(s) 50, 166
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 3 cut(s) 113, 173, 176
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 2 cut(s) 50, 166
SchI GAGTC 2 cut(s) 11, 64
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 1 cut(s) 166
SphI GCATGC 1 cut(s) 270
SsiI CCGC 3 cut(s) 173, 176, 182
TaaI ACNGT 1 cut(s) 61
TauI GCSGC 2 cut(s) 175, 178
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 166
XceI RCATGY 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.