Rh4BG101100

Wiskott-Aldrich syndrome protein family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016073
Physical Location & Seq
Forward (+)
17405261 .. 17409999
4739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG101100.1

Sequence Viewer

Length: 414 bp
ATGGCTATCAACCGAGACTCCACTCCCCCTCCAAAGATCGGCAAGATTGGGCCTTACACTGTGTTCATGACTCCACCCTCCACTCCAAAACCACCAGAAGAAGAACAACAACAGCAGCAACATCAACAGCCCATCTTTGATTCTCCCAAGAAAGTTGTCCTGCCTCCGGTTCAGCCGCCGCCTCAGCAGTTTATGAAGCCGGTCGCCGGCGATGGCTCTGTTGTTGGGTTCTTCAAGAATGCTGTCACTAAAGTTCAGAATGCACATTCGAGTTTGGATGATCACTTGGCGCGCTGGTTTGGGTTGAACCAGTCAAAGTATCAGTGGGCACTTGATGATTATTATGAGAGCAAGGGATTGGAAAAGGGCAATGCTAAAGCACAAGAGGTATCTAGCAAAATGCAGAGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAM177

Protein Analysis

137

Amino Acids

15.28

Weight (kDa)

8.8

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18910
fragaria_vesca FvH4_4g07900
malus_domestica MD13G1249500.v1.1 MD16G1255800.v1.1
prunus_persica Prupe.1G082700_v2.0.a1
pyrus_communis pycom13g21990 pycom16g21700
rosa_chinensis RchiOBHm_Chr4g0401201
rosa_laevigata RLG00000009156
rosa_rugosa Rorug04G0028900
rosa_samantha Rh4AG106400 Rh4BG101100 Rh4CG115400
rosa_wichuraiana Rw4G008610 Rw4G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 292
AciI CCGC 2 cut(s) 176, 179
AfiI CCNNNNNNNGG 3 cut(s) 38, 166, 206
AgsI TTSAA 2 cut(s) 235, 307
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 115
AspLEI GCGC 2 cut(s) 292, 294
AspS9I GGNCC 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 331
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 140, 206
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 393
BisI GCNGC 3 cut(s) 116, 176, 179
BlsI GCNGC 3 cut(s) 117, 177, 180
BmgT120I GGNCC 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 3 cut(s) 13, 32, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 166, 206
Bse118I RCCGGY 2 cut(s) 199, 206
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 376
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 3 cut(s) 38, 166, 206
BseMI GCAATG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 310
BsePI GCGCGC 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 292
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 204
BsiSI CCGG 3 cut(s) 167, 200, 207
BslI CCNNNNNNNGG 3 cut(s) 38, 166, 206
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 2 cut(s) 244, 265
BsnI GGCC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 36, 280
BspACI CCGC 2 cut(s) 176, 179
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 292
BspHI TCATGA 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 376
BsrFI RCCGGY 2 cut(s) 199, 206
BsrI ACTGG 1 cut(s) 310
BssAI RCCGGY 2 cut(s) 199, 206
BssHII GCGCGC 1 cut(s) 290
BssMI GATC 2 cut(s) 36, 280
Bst4CI ACNGT 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 208, 292
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 292
BstHHI GCGC 2 cut(s) 292, 294
BstKTI GATC 2 cut(s) 39, 283
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 36, 280
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 331
BstUI CGCG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 52
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 2 cut(s) 57, 329
Cac8I GCNNGC 2 cut(s) 208, 292
CciI TCATGA 1 cut(s) 66
CfoI GCGC 2 cut(s) 292, 294
Cfr10I RCCGGY 2 cut(s) 199, 206
Cfr13I GGNCC 1 cut(s) 50
CviAII CATG 1 cut(s) 67
CviJI RGCY 6 cut(s) 5, 52, 130, 175, 199, 216
CviKI_1 RGCY 6 cut(s) 5, 52, 130, 175, 199, 216
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 38, 282
DpnII GATC 2 cut(s) 36, 280
FaeI CATG 1 cut(s) 70
FaiI YATR 4 cut(s) 68, 194, 345, 412
FatI CATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 116, 176, 179
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 3 cut(s) 116, 176, 179
FspBI CTAG 1 cut(s) 393
GlaI GCGC 2 cut(s) 291, 293
GluI GCNGC 3 cut(s) 116, 176, 179
HaeIII GGCC 1 cut(s) 52
HapII CCGG 3 cut(s) 167, 200, 207
HhaI GCGC 2 cut(s) 292, 294
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 2 cut(s) 290, 292
HinP1I GCGC 2 cut(s) 290, 292
HinfI GANTC 3 cut(s) 17, 70, 140
HpaII CCGG 3 cut(s) 167, 200, 207
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 67, 235
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 263, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 2 cut(s) 290, 292
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 36, 280
LpnPI CCDG 7 cut(s) 108, 173, 180, 213, 220, 280, 323
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 38, 282
MboI GATC 2 cut(s) 36, 280
MboII GAAGA 3 cut(s) 110, 113, 223
MhlI GDGCHC 1 cut(s) 331
MlyI GAGTC 2 cut(s) 11, 64
MnlI CCTC 5 cut(s) 39, 88, 174, 192, 379
MreI CGCCGGCG 1 cut(s) 206
MroNI GCCGGC 1 cut(s) 206
MspI CCGG 3 cut(s) 167, 200, 207
Mva1269I GAATGC 2 cut(s) 244, 265
MvnI CGCG 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 184
NaeI GCCGGC 1 cut(s) 208
NdeII GATC 2 cut(s) 36, 280
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 244
PagI TCATGA 1 cut(s) 66
PauI GCGCGC 1 cut(s) 290
PctI GAATGC 2 cut(s) 244, 265
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 3 cut(s) 117, 177, 180
PleI GAGTC 2 cut(s) 11, 64
PpsI GAGTC 2 cut(s) 11, 64
PspPI GGNCC 1 cut(s) 50
PteI GCGCGC 1 cut(s) 290
SatI GCNGC 3 cut(s) 116, 176, 179
Sau3AI GATC 2 cut(s) 36, 280
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 2 cut(s) 11, 64
SduI GDGCHC 1 cut(s) 331
SetI ASST 1 cut(s) 390
SgrAI CRCCGGYG 1 cut(s) 206
SsiI CCGC 2 cut(s) 176, 179
SspMI CTAG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 269
TauI GCSGC 2 cut(s) 178, 181
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 2 cut(s) 64, 329
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 55, 209
TspRI CASTG 2 cut(s) 64, 329
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.