Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016073

Physical Location & Seq

Genomic Coordinates Forward (+)

18929680 .. 18933186

Gene Structure 3507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTATCAACCGAGACTCCACTCCCCCTCCAAAGATCGGCAAGATTGGGCCTTACACTGTGTTCATGACTCCACCCTCCACTCCAAAACCACCAGAAGAAGAACAACAACAGCAGCAACAGCAACAGCCCATCTTTGATTCTCCCAAGAAAGTTGTCCTGCCTCCGGTCCAGCCGCCGCCTCCGCAGTTTGTGAAGCCGGTCGCCGGCGATGGCTCTGTTGTTGGGTTCTTCAAGAATGCTGTCACTAAAGTTCAGAATGCACATTCGAGTTTGGATGATCACTTGGCGCGCTGGTTTGGGTTGAACCAGTCAAAGTATCAGTGGGCACTTGATGATTATTATGAGAGCAAGGGATTGGAAAAGGGCAATGCTAAAGCACAAGAGGTATCTAGCAAAATGCAGAGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM177

Protein Analysis

137

Amino Acids

15.2

Weight (kDa)

8.8

Isoelectric Point (pI)

62.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18910
fragaria_vesca	FvH4_4g07900
malus_domestica	MD13G1249500.v1.1 MD16G1255800.v1.1
prunus_persica	Prupe.1G082700_v2.0.a1
pyrus_communis	pycom13g21990 pycom16g21700
rosa_chinensis	RchiOBHm_Chr4g0401201
rosa_laevigata	RLG00000009156
rosa_rugosa	Rorug04G0028900
rosa_samantha	Rh4AG106400 Rh4BG101100 Rh4CG115400
rosa_wichuraiana	Rw4G008610 Rw4G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	292
AciI	CCGC	3 cut(s)	176, 179, 185
AfiI	CCNNNNNNNGG	3 cut(s)	38, 166, 206
AgsI	TTSAA	2 cut(s)	235, 307
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	292, 294
AspS9I	GGNCC	2 cut(s)	50, 169
AvaII	GGWCC	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	140, 206
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	393
BisI	GCNGC	3 cut(s)	116, 176, 179
BlsI	GCNGC	3 cut(s)	117, 177, 180
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	50, 169
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	3 cut(s)	13, 32, 43
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 166, 206
Bse118I	RCCGGY	2 cut(s)	199, 206
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	3 cut(s)	38, 166, 206
BseMI	GCAATG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	310
BsePI	GCGCGC	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	292
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	52
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	3 cut(s)	167, 200, 207
BslI	CCNNNNNNNGG	3 cut(s)	38, 166, 206
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	2 cut(s)	244, 265
BsnI	GGCC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	36, 280
BspACI	CCGC	3 cut(s)	176, 179, 185
BspANI	GGCC	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	292
BspHI	TCATGA	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	376
BsrFI	RCCGGY	2 cut(s)	199, 206
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	2 cut(s)	199, 206
BssHII	GCGCGC	1 cut(s)	290
BssMI	GATC	2 cut(s)	36, 280
Bst4CI	ACNGT	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	208, 292
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	292
BstHHI	GCGC	2 cut(s)	292, 294
BstKTI	GATC	2 cut(s)	39, 283
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	36, 280
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 184
BstSLI	GKGCMC	1 cut(s)	331
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	52
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	57, 329
Cac8I	GCNNGC	2 cut(s)	208, 292
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	2 cut(s)	292, 294
Cfr10I	RCCGGY	2 cut(s)	199, 206
Cfr13I	GGNCC	2 cut(s)	50, 169
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	6 cut(s)	5, 52, 130, 175, 199, 216
CviKI_1	RGCY	6 cut(s)	5, 52, 130, 175, 199, 216
DpnI	GATC	2 cut(s)	38, 282
DpnII	GATC	2 cut(s)	36, 280
Eco47I	GGWCC	1 cut(s)	169
FaeI	CATG	1 cut(s)	70
FaiI	YATR	3 cut(s)	68, 345, 412
FatI	CATG	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	116, 176, 179
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	116, 176, 179
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	2 cut(s)	291, 293
GluI	GCNGC	3 cut(s)	116, 176, 179
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	3 cut(s)	167, 200, 207
HhaI	GCGC	2 cut(s)	292, 294
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	2 cut(s)	290, 292
HinP1I	GCGC	2 cut(s)	290, 292
HinfI	GANTC	3 cut(s)	17, 70, 140
HpaII	CCGG	3 cut(s)	167, 200, 207
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	2 cut(s)	67, 235
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	263, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 184
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	2 cut(s)	290, 292
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	36, 280
LpnPI	CCDG	8 cut(s)	108, 173, 180, 185, 213, 220, 280, 323
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	38, 282
MboI	GATC	2 cut(s)	36, 280
MboII	GAAGA	3 cut(s)	110, 113, 223
MhlI	GDGCHC	1 cut(s)	331
MlyI	GAGTC	2 cut(s)	11, 64
MnlI	CCTC	5 cut(s)	39, 88, 174, 192, 379
MreI	CGCCGGCG	1 cut(s)	206
MroNI	GCCGGC	1 cut(s)	206
MspI	CCGG	3 cut(s)	167, 200, 207
Mva1269I	GAATGC	2 cut(s)	244, 265
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	121, 184
NaeI	GCCGGC	1 cut(s)	208
NdeII	GATC	2 cut(s)	36, 280
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	66
PauI	GCGCGC	1 cut(s)	290
PctI	GAATGC	2 cut(s)	244, 265
PdiI	GCCGGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	117, 177, 180
PleI	GAGTC	2 cut(s)	11, 64
PpsI	GAGTC	2 cut(s)	11, 64
PspPI	GGNCC	2 cut(s)	50, 169
PteI	GCGCGC	1 cut(s)	290
SatI	GCNGC	3 cut(s)	116, 176, 179
Sau3AI	GATC	2 cut(s)	36, 280
Sau96I	GGNCC	2 cut(s)	50, 169
SchI	GAGTC	2 cut(s)	11, 64
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	1 cut(s)	390
SgrAI	CRCCGGYG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	169
SsiI	CCGC	3 cut(s)	176, 179, 185
SspMI	CTAG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	269
TauI	GCSGC	2 cut(s)	178, 181
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	2 cut(s)	64, 329
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	64, 329
VpaK11BI	GGWCC	1 cut(s)	169
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.