pycom13g21990

Wiskott-Aldrich syndrome protein family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0016073
Physical Location & Seq
Forward (+)
19073771 .. 19074205
435 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g21990.1

Sequence Viewer

Length: 435 bp
ATGGCCATCAACAGGGACTCCACTACCCTTCCAATGATCGGCAAGATTGGGCCCTACACTGTCTTTATGACGCCGCCCTCCACCCCTAAACCGCCCGAAGCGGTTTTTGAATCTCCCCGGAAGGTGGCCGCGCCGGTCTTTGAGTCCCCCAGGAAGGTGGCCCCGCCCCCGGTCCAGCCGCCGCCTCAGCAATTGGTGAAGCCCATTGCCGTATCTTCGGATTCCTCGTCCGATGGCTCGGTGTTGGGGATTTTTAAGAATGCGGTCACCAAAGTGCAGAAGGGTAATGCGTGTCTTTGTTTTACTATGTTTTTGTGTGGTTTTTGGTTGTTCTGTGGTTGTGGGTTGGGGAGTGGAGGAAGAGGAAGGATAATTTGGGATTTTGGCATGAAATTAATGAAAGAAAGCCAACCAGATTTTATTGTGAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAM177

Protein Analysis

145

Amino Acids

15.49

Weight (kDa)

9.17

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18910
fragaria_vesca FvH4_4g07900
malus_domestica MD13G1249500.v1.1 MD16G1255800.v1.1
prunus_persica Prupe.1G082700_v2.0.a1
pyrus_communis pycom13g21990 pycom16g21700
rosa_chinensis RchiOBHm_Chr4g0401201
rosa_laevigata RLG00000009156
rosa_rugosa Rorug04G0028900
rosa_samantha Rh4AG106400 Rh4BG101100 Rh4CG115400
rosa_wichuraiana Rw4G008610 Rw4G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AciI CCGC 8 cut(s) 74, 92, 101, 129, 164, 179, 182, 263
AcoI YGGCCR 2 cut(s) 3, 126
AcyI GRCGYC 1 cut(s) 71
AfiI CCNNNNNNNGG 5 cut(s) 12, 38, 124, 154, 169
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AleI CACNNNNGTG 1 cut(s) 272
AoxI GGCC 4 cut(s) 3, 50, 126, 159
ApaI GGGCCC 1 cut(s) 54
AseI ATTAAT 1 cut(s) 395
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 4 cut(s) 50, 51, 160, 172
AsuC2I CCSGG 2 cut(s) 118, 170
AsuHPI GGTGA 2 cut(s) 208, 259
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 186
BccI CCATC 2 cut(s) 14, 227
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 151
BcnI CCSGG 2 cut(s) 118, 170
BisI GCNGC 4 cut(s) 74, 129, 179, 182
BlsI GCNGC 4 cut(s) 75, 130, 180, 183
Bme1390I CCNGG 3 cut(s) 118, 151, 170
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 4 cut(s) 50, 51, 160, 172
BmiI GGNNCC 2 cut(s) 52, 162
BmrFI CCNGG 3 cut(s) 118, 151, 170
Bpu10I CCTNAGC 1 cut(s) 186
BpuMI CCSGG 2 cut(s) 118, 170
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 3 cut(s) 116, 149, 168
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 5 cut(s) 12, 38, 124, 154, 169
Bse118I RCCGGY 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 116, 149, 168
BseLI CCNNNNNNNGG 5 cut(s) 12, 38, 124, 154, 169
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 4 cut(s) 5, 52, 128, 161
BsiSI CCGG 3 cut(s) 118, 134, 170
BslFI GGGAC 2 cut(s) 29, 130
BslI CCNNNNNNNGG 5 cut(s) 12, 38, 124, 154, 169
BsmFI GGGAC 2 cut(s) 29, 130
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 4 cut(s) 5, 52, 128, 161
Bsp120I GGGCCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 8 cut(s) 74, 92, 101, 129, 164, 179, 182, 263
BspANI GGCC 4 cut(s) 5, 52, 128, 161
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 52, 162
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 3 cut(s) 116, 149, 168
BssMI GATC 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 355
BstACI GRCGYC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 265
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNI CCWGG 1 cut(s) 151
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 116, 149, 168
BstSLI GKGCMC 1 cut(s) 54
BstUI CGCG 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 157
BsuRI GGCC 4 cut(s) 5, 52, 128, 161
BtsIMutI CAGTG 1 cut(s) 57
CfoI GCGC 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 4 cut(s) 50, 51, 160, 172
CseI GACGC 1 cut(s) 79
CviAII CATG 1 cut(s) 388
CviJI RGCY 8 cut(s) 5, 52, 128, 161, 178, 202, 237, 408
CviKI_1 RGCY 8 cut(s) 5, 52, 128, 161, 178, 202, 237, 408
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 2 cut(s) 3, 126
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 172
Eco91I GGTNACC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 51
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 1 cut(s) 391
FaiI YATR 3 cut(s) 68, 308, 389
FaqI GGGAC 2 cut(s) 29, 130
FatI CATG 1 cut(s) 387
FauI CCCGC 1 cut(s) 171
Fnu4HI GCNGC 4 cut(s) 74, 129, 179, 182
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 4 cut(s) 74, 129, 179, 182
GlaI GCGC 1 cut(s) 132
GluI GCNGC 4 cut(s) 74, 129, 179, 182
HaeIII GGCC 4 cut(s) 5, 52, 128, 161
HapII CCGG 3 cut(s) 118, 134, 170
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 1 cut(s) 391
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 4 cut(s) 17, 110, 143, 221
HpaII CCGG 3 cut(s) 118, 134, 170
HphI GGTGA 2 cut(s) 208, 259
Hpy188I TCNGA 2 cut(s) 220, 232
HpyAV CCTTC 5 cut(s) 38, 115, 148, 274, 360
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 391
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 7 cut(s) 131, 136, 147, 163, 183, 188, 426
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 2 cut(s) 207, 372
MfeI CAATTG 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 191, 372, 392, 427
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 11, 152
MnlI CCTC 5 cut(s) 88, 195, 235, 350, 356
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 255, 395
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 118, 134, 170
MspR9I CCNGG 3 cut(s) 118, 151, 170
MunI CAATTG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 187
NciI CCSGG 2 cut(s) 118, 170
NdeII GATC 1 cut(s) 36
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 2 cut(s) 52, 162
NmuCI GTSAC 1 cut(s) 265
OliI CACNNNNGTG 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 110, 221
PkrI GCNGC 4 cut(s) 75, 130, 180, 183
PleI GAGTC 2 cut(s) 11, 151
PpsI GAGTC 2 cut(s) 11, 151
PshBI ATTAAT 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 149
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 52, 162
PspOMI GGGCCC 1 cut(s) 50
PspPI GGNCC 4 cut(s) 50, 51, 160, 172
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 2 cut(s) 255, 395
SatI GCNGC 4 cut(s) 74, 129, 179, 182
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 4 cut(s) 50, 51, 160, 172
SchI GAGTC 2 cut(s) 11, 152
ScrFI CCNGG 3 cut(s) 118, 151, 170
SduI GDGCHC 1 cut(s) 54
SetI ASST 2 cut(s) 126, 159
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 4 cut(s) 191, 372, 392, 427
SsiI CCGC 8 cut(s) 74, 92, 101, 129, 164, 179, 182, 263
StyD4I CCNGG 3 cut(s) 116, 149, 168
TaaI ACNGT 1 cut(s) 61
TasI AATT 4 cut(s) 191, 372, 392, 427
TauI GCSGC 4 cut(s) 76, 131, 181, 184
TfiI GAWTC 2 cut(s) 110, 221
Tru1I TTAA 2 cut(s) 255, 395
Tru9I TTAA 2 cut(s) 255, 395
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 404, 413
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 172
VspI ATTAAT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.