AT2G19760

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007592
Physical Location & Seq
Reverse (-)
8516658 .. 8518194
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19760.1

Sequence Viewer

Length: 396 bp
ATGTCTTGGCAATCATACGTCGATGATCACCTTATGTGTGATGTCGAAGGCAACCATCTCACCGCCGCCGCAATTCTCGGCCAAGACGGCAGTGTCTGGGCTCAGAGCGCCAAATTTCCTCAGTTGAAGCCTCAAGAAATCGATGGAATCAAGAAGGACTTTGAGGAGCCCGGGTTTCTTGCCCCAACCGGACTATTTCTCGGTGGCGAAAAATACATGGTTATCCAAGGTGAACAAGGAGCTGTGATCCGAGGGAAGAAGGGACCTGGAGGTGTCACTATCAAGAAGACAAACCAAGCTTTGGTCTTTGGCTTCTACGATGAACCAATGACTGGAGGTCAATGCAACTTGGTTGTCGAAAGGCTCGGGGATTACCTTATCGAGTCTGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007275 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0008154 GO:0009506 GO:0009507 GO:0009524 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009987 GO:0010229 GO:0010639 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022622 GO:0030029 GO:0030036 GO:0030054 GO:0030312 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0031974 GO:0031981 GO:0032271 GO:0032272 GO:0032501 GO:0032502 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033036 GO:0033043 GO:0034613 GO:0040007 GO:0042989 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045185 GO:0048046 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0055044 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0090567 GO:0090696 GO:0097435 GO:0099402 GO:0099568 GO:0110053 GO:1902903 GO:1902904
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

131

Amino Acids

14.27

Weight (kDa)

4.7

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 1 - 130 5.6e-43 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccB7I CCANNNNNTGG 2 cut(s) 301, 332
AciI CCGC 3 cut(s) 63, 66, 69
AclWI GGATC 1 cut(s) 241
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 301, 332
AgsI TTSAA 1 cut(s) 127
AhdI GACNNNNNGTC 1 cut(s) 336
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 2 cut(s) 242, 299
AluI AGCT 2 cut(s) 242, 299
AlwI GGATC 1 cut(s) 241
AlwNI CAGNNNCTG 1 cut(s) 96
Ama87I CYCGRG 2 cut(s) 170, 365
AoxI GGCC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 113
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 2 cut(s) 171, 172
AsuHPI GGTGA 3 cut(s) 20, 52, 242
AvaI CYCGRG 2 cut(s) 170, 365
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 103, 171
BbsI GAAGAC 1 cut(s) 293
BccI CCATC 2 cut(s) 63, 137
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 267
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 2 cut(s) 171, 172
BfoI RGCGCY 1 cut(s) 111
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 2 cut(s) 66, 69
BlsI GCNGC 2 cut(s) 67, 70
Bme1390I CCNGG 3 cut(s) 171, 172, 267
Bme18I GGWCC 1 cut(s) 263
BmeRI GACNNNNNGTC 1 cut(s) 336
BmeT110I CYCGRG 2 cut(s) 170, 365
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 168, 264
BmrFI CCNGG 3 cut(s) 171, 172, 267
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 2 cut(s) 288, 354
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 2 cut(s) 171, 172
Bsa29I ATCGAT 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 170, 226, 250
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 332
Bse1I ACTGG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 267
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 3 cut(s) 170, 226, 250
BseLI CCNNNNNNNGG 2 cut(s) 301, 332
BseMII CTCAG 2 cut(s) 116, 134
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 81
BshVI ATCGAT 1 cut(s) 141
BsiHKCI CYCGRG 2 cut(s) 170, 365
BsiSI CCGG 2 cut(s) 171, 189
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 301, 332
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 81
BsoBI CYCGRG 2 cut(s) 170, 365
Bsp1286I GDGCHC 2 cut(s) 103, 171
Bsp143I GATC 2 cut(s) 25, 246
BspACI CCGC 3 cut(s) 63, 66, 69
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 115, 133
BspDI ATCGAT 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 168, 264
BspPI GGATC 1 cut(s) 241
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 3 cut(s) 170, 226, 250
BssMI GATC 2 cut(s) 25, 246
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 102, 120
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 28, 249
BstMBI GATC 2 cut(s) 25, 246
BstMWI GCNNNNNNNGC 2 cut(s) 87, 107
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 3 cut(s) 169, 170, 265
BstV2I GAAGAC 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 96
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 263
Cfr9I CCCGGG 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 141
CviAII CATG 1 cut(s) 217
CviJI RGCY 8 cut(s) 81, 101, 130, 169, 242, 299, 312, 364
CviKI_1 RGCY 8 cut(s) 81, 101, 130, 169, 242, 299, 312, 364
DdeI CTNAG 2 cut(s) 102, 120
DpnI GATC 2 cut(s) 27, 248
DpnII GATC 2 cut(s) 25, 246
DrdI GACNNNNNNGTC 1 cut(s) 92
DriI GACNNNNNGTC 1 cut(s) 336
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 79
Eam1105I GACNNNNNGTC 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 2 cut(s) 103, 171
Eco47I GGWCC 1 cut(s) 263
Eco88I CYCGRG 2 cut(s) 170, 365
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 2 cut(s) 103, 171
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 1 cut(s) 220
FaiI YATR 3 cut(s) 16, 35, 218
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 276
FatI CATG 1 cut(s) 216
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 66, 69
FriOI GRGCYC 2 cut(s) 103, 171
Fsp4HI GCNGC 2 cut(s) 66, 69
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 66, 69
GsuI CTGGAG 2 cut(s) 288, 354
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 171, 189
HhaI GCGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 2 cut(s) 147, 383
HpaII CCGG 2 cut(s) 171, 189
HphI GGTGA 3 cut(s) 20, 52, 242
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 105, 251, 388
Hpy188III TCNNGA 3 cut(s) 134, 151, 283
Hpy8I GTNNAC 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 41, 148, 253
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 107
HpyF3I CTNAG 2 cut(s) 102, 120
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 2 cut(s) 25, 246
LmnI GCTCC 2 cut(s) 166, 239
LpnPI CCDG 6 cut(s) 82, 184, 202, 252, 279, 318
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 274
MalI GATC 2 cut(s) 27, 248
MboI GATC 2 cut(s) 25, 246
MboII GAAGA 2 cut(s) 268, 298
MhlI GDGCHC 2 cut(s) 103, 171
MluCI AATT 2 cut(s) 72, 113
MlyI GAGTC 1 cut(s) 392
MnlI CCTC 6 cut(s) 129, 141, 157, 245, 263, 329
MspI CCGG 2 cut(s) 171, 189
MspR9I CCNGG 3 cut(s) 171, 172, 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 87, 107
NciI CCSGG 2 cut(s) 171, 172
NdeII GATC 2 cut(s) 25, 246
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 168, 264
NmeAIII GCCGAG 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 147
PflMI CCANNNNNTGG 2 cut(s) 301, 332
PkrI GCNGC 2 cut(s) 67, 70
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 168, 264
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
PstNI CAGNNNCTG 1 cut(s) 96
SatI GCNGC 2 cut(s) 66, 69
Sau3AI GATC 2 cut(s) 25, 246
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 3 cut(s) 171, 172, 267
SduI GDGCHC 2 cut(s) 103, 171
SetI ASST 9 cut(s) 21, 33, 232, 244, 268, 274, 301, 340, 378
SinI GGWCC 1 cut(s) 263
SmaI CCCGGG 1 cut(s) 172
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 2 cut(s) 72, 113
SsiI CCGC 3 cut(s) 63, 66, 69
StyD4I CCNGG 3 cut(s) 169, 170, 265
StyI CCWWGG 1 cut(s) 226
TaiI ACGT 1 cut(s) 21
TaqI TCGA 5 cut(s) 21, 45, 141, 357, 381
TasI AATT 2 cut(s) 72, 113
TauI GCSGC 2 cut(s) 68, 71
TfiI GAWTC 1 cut(s) 147
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 336
TspMI CCCGGG 1 cut(s) 170
TspRI CASTG 1 cut(s) 97
Van91I CCANNNNNTGG 2 cut(s) 301, 332
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 113
XmaI CCCGGG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.