Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007592

Physical Location & Seq

Genomic Coordinates Reverse (-)

73996467 .. 73997168

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG465700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGAACCCAAAACAATCTTCAATTGTTCATACAGTTGCTAAACCATTACCAAGACGGCAACCACCTCTCCGCCGCGGCCATCATCGGCCAAGACGGCAGCGTTTGGGCCCAGAGAGCCACCTTCCCTCAGTTGAAGCCTGAAGAAGTTACTGGCATTGTGAATGACTTTAATGAACCTGGAACACTTGCTCCAACTGGGTTGTATCTTGGAGGCACTAAGTACATGGTGATCCAAGGAGAGCCTGGAGCTGTCATTAGAGGGAAGAAGGGCCCTGGAGGTGTTACTGTGAAGAAGACTACTCTGGCATTGCTCATTGGGATCTATGATGAGACAATGACTCCGGGACAATGCAACATGATTGTGGAGAGGCTTGGCGATTATCTGGTTGAGCAGGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

134

Amino Acids

14.49

Weight (kDa)

5.59

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	19 - 134	4.4e-37	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19760 AT4G29350 AT5G56600 AT5G56600
fragaria_vesca	FvH4_1g06461
malus_domestica	MD02G1067900.v1.1 MD15G1199500.v1.1
prunus_persica	Prupe.7G217700_v2.0.a1 Prupe.7G217700_v2.0.a1
pyrus_communis	pycom15g17700
rosa_chinensis	RchiOBHm_Chr2g0092211
rosa_laevigata	RLG00000016286
rosa_multiflora	Rmu_sc0000524.1_g000024 Rmu_sc0005722.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149370
rosa_rugosa	Rorug02G0023700
rosa_samantha	Rh2BG069000 Rh4DG181000 Rh5DG465700
rosa_wichuraiana	Rw2G006270 Rw3G005780 Rw5G025200 Rw5G032250 Rw6G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	77
AciI	CCGC	3 cut(s)	72, 75, 77
AclWI	GGATC	2 cut(s)	226, 329
AcoI	YGGCCR	2 cut(s)	78, 88
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	23, 136
AjnI	CCWGG	3 cut(s)	178, 244, 274
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AloI	GAACNNNNNNTCC	2 cut(s)	175, 207
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	226, 329
AoxI	GGCC	4 cut(s)	78, 88, 108, 271
ApaI	GGGCCC	2 cut(s)	112, 275
ApeKI	GCWGC	1 cut(s)	99
AspS9I	GGNCC	4 cut(s)	108, 109, 271, 272
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	241
BaeGI	GKGCMC	2 cut(s)	112, 275
BanII	GRGCYC	2 cut(s)	112, 275
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	73, 112
BciT130I	CCWGG	3 cut(s)	180, 246, 276
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	1 cut(s)	403
BglI	GCCNNNNNGGC	1 cut(s)	96
BisI	GCNGC	3 cut(s)	75, 78, 100
BlsI	GCNGC	3 cut(s)	76, 79, 101
Bme1390I	CCNGG	4 cut(s)	180, 246, 276, 345
BmgT120I	GGNCC	4 cut(s)	108, 109, 271, 272
BmiI	GGNNCC	2 cut(s)	110, 273
BmrFI	CCNGG	4 cut(s)	180, 246, 276, 345
BmrI	ACTGGG	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	2 cut(s)	267, 297
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	3 cut(s)	75, 235, 274
BsaXI	ACNNNNNCTCC	6 cut(s)	53, 83, 175, 205, 325, 355
Bse1I	ACTGG	2 cut(s)	157, 202
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	3 cut(s)	180, 246, 276
BseDI	CCNNGG	3 cut(s)	75, 235, 274
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	157, 202
BseSI	GKGCMC	2 cut(s)	112, 275
BseXI	GCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	4 cut(s)	80, 90, 110, 273
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	360
BsnI	GGCC	4 cut(s)	80, 90, 110, 273
Bsp120I	GGGCCC	2 cut(s)	108, 271
Bsp1286I	GDGCHC	2 cut(s)	112, 275
Bsp143I	GATC	2 cut(s)	231, 321
BspACI	CCGC	3 cut(s)	72, 75, 77
BspANI	GGCC	4 cut(s)	80, 90, 110, 273
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	110, 273
BspPI	GGATC	2 cut(s)	226, 329
BsrDI	GCAATG	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	157, 202
BssECI	CCNNGG	3 cut(s)	75, 235, 274
BssMI	GATC	2 cut(s)	231, 321
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	3 cut(s)	180, 246, 276
Bst4CI	ACNGT	2 cut(s)	36, 289
BstDEI	CTNAG	2 cut(s)	129, 219
BstDSI	CCRYGG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	234, 324
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	2 cut(s)	231, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 116
BstNI	CCWGG	3 cut(s)	180, 246, 276
BstSCI	CCNGG	4 cut(s)	178, 244, 274, 343
BstSLI	GKGCMC	2 cut(s)	112, 275
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	4 cut(s)	80, 90, 110, 273
BtgI	CCRYGG	1 cut(s)	75
Cfr13I	GGNCC	4 cut(s)	108, 109, 271, 272
Cfr42I	CCGCGG	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	226, 358
CviJI	RGCY	9 cut(s)	80, 90, 110, 119, 139, 244, 251, 273, 373
CviKI_1	RGCY	9 cut(s)	80, 90, 110, 119, 139, 244, 251, 273, 373
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	2 cut(s)	129, 219
DpnI	GATC	2 cut(s)	233, 323
DpnII	GATC	2 cut(s)	231, 321
EaeI	YGGCCR	2 cut(s)	78, 88
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	235
Eco24I	GRGCYC	2 cut(s)	112, 275
Eco57I	CTGAAG	1 cut(s)	162
EcoO109I	RGGNCCY	2 cut(s)	271, 272
EcoRII	CCWGG	3 cut(s)	178, 244, 274
EcoT14I	CCWWGG	1 cut(s)	235
EcoT38I	GRGCYC	2 cut(s)	112, 275
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	2 cut(s)	229, 361
FaiI	YATR	4 cut(s)	32, 227, 327, 359
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	2 cut(s)	225, 357
Fnu4HI	GCNGC	3 cut(s)	75, 78, 100
FriOI	GRGCYC	2 cut(s)	112, 275
Fsp4HI	GCNGC	3 cut(s)	75, 78, 100
FspBI	CTAG	1 cut(s)	403
GluI	GCNGC	3 cut(s)	75, 78, 100
GsuI	CTGGAG	2 cut(s)	267, 297
HaeIII	GGCC	4 cut(s)	80, 90, 110, 273
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	2 cut(s)	229, 361
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	133, 262
HpyCH4III	ACNGT	2 cut(s)	36, 289
HpyCH4V	TGCA	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 116
HpyF3I	CTNAG	2 cut(s)	129, 219
Hsp92II	CATG	2 cut(s)	229, 361
KspI	CCGCGG	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	231, 321
LmnI	GCTCC	2 cut(s)	196, 248
Lsp1109I	GCAGC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	403
MaeIII	GTNAC	2 cut(s)	148, 283
MalI	GATC	2 cut(s)	233, 323
MboI	GATC	2 cut(s)	231, 321
MboII	GAAGA	5 cut(s)	11, 155, 277, 304, 307
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	2 cut(s)	112, 275
MluCI	AATT	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	6 cut(s)	77, 138, 206, 254, 272, 363
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	4 cut(s)	180, 246, 276, 345
MunI	CAATTG	1 cut(s)	23
MvaI	CCWGG	3 cut(s)	180, 246, 276
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	96, 116
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	231, 321
NlaIII	CATG	2 cut(s)	229, 361
NlaIV	GGNNCC	2 cut(s)	110, 273
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	76, 79, 101
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp6I	CCWGG	3 cut(s)	178, 244, 274
PspGI	CCWGG	3 cut(s)	178, 244, 274
PspN4I	GGNNCC	2 cut(s)	110, 273
PspOMI	GGGCCC	2 cut(s)	108, 271
PspPI	GGNCC	4 cut(s)	108, 109, 271, 272
PsuI	RGATCY	1 cut(s)	321
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	362
SacII	CCGCGG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	75, 78, 100
Sau3AI	GATC	2 cut(s)	231, 321
Sau96I	GGNCC	4 cut(s)	108, 109, 271, 272
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	4 cut(s)	180, 246, 276, 345
SduI	GDGCHC	2 cut(s)	112, 275
SetI	ASST	5 cut(s)	69, 125, 181, 253, 283
Sfr303I	CCGCGG	1 cut(s)	78
SgrBI	CCGCGG	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	3 cut(s)	72, 75, 77
SspMI	CTAG	1 cut(s)	403
StyD4I	CCNGG	4 cut(s)	178, 244, 274, 343
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	36, 289
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	2 cut(s)	77, 80
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseI	GCWGC	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	19, 189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XspI	CTAG	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.