Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007592

Physical Location & Seq

Genomic Coordinates Reverse (-)

5066912 .. 5073300

Gene Structure 6389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTGAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGACATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAGCTGTAAGTCTAAAAACAGATGATAAATTTTATTTGCCATGCACTAGTTACTATTCTATGCATGGATATTTCAAGAAGCTGGATGAAGAGATTAAAAGGGGAGCTGCATCTTTGGAAGTAGAAGCCCAACTATCTCAGTTGAAGCCTGAAGAAGTTACTGGCATTGTGAATGACTTTAATGAACCTGGAACACTTGCTCCAACTGGGTTGTATCTTGGAGGCACTAAGTACATGGTGATCCAAGGAGAGCCTGGAGCTGTCATTAGAGGGAAGAAGGGCCCTGGAGGTGTTACTGTGAAGAAGACTACTCTGGCATTGCTCATTGGGATCTATGATGAGCCAATGACTCCCGGACAATGCAACATGATTGTGGAGAGGCTTGGCGATTATCTGGTTGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

242

Amino Acids

26.48

Weight (kDa)

5.06

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	69 - 116	5.2e-07	ABC transporter
Profilin	PF00235	153 - 240	1.8e-26	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19760 AT4G29350 AT5G56600 AT5G56600
fragaria_vesca	FvH4_1g06461
malus_domestica	MD02G1067900.v1.1 MD15G1199500.v1.1
prunus_persica	Prupe.7G217700_v2.0.a1 Prupe.7G217700_v2.0.a1
pyrus_communis	pycom15g17700
rosa_chinensis	RchiOBHm_Chr2g0092211
rosa_laevigata	RLG00000016286
rosa_multiflora	Rmu_sc0000524.1_g000024 Rmu_sc0005722.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149370
rosa_rugosa	Rorug02G0023700
rosa_samantha	Rh2BG069000 Rh4DG181000 Rh5DG465700
rosa_wichuraiana	Rw2G006270 Rw3G005780 Rw5G025200 Rw5G032250 Rw6G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	40, 556, 659
AcsI	RAATTY	3 cut(s)	136, 315, 350
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	4 cut(s)	103, 200, 397, 466
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	3 cut(s)	508, 574, 604
AloI	GAACNNNNNNTCC	2 cut(s)	505, 537
AluBI	AGCT	7 cut(s)	124, 150, 269, 326, 403, 428, 581
AluI	AGCT	7 cut(s)	124, 150, 269, 326, 403, 428, 581
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	3 cut(s)	40, 556, 659
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	601
ApaI	GGGCCC	1 cut(s)	605
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	3 cut(s)	136, 315, 350
AspS9I	GGNCC	3 cut(s)	257, 601, 602
AsuC2I	CCSGG	1 cut(s)	675
AsuHPI	GGTGA	2 cut(s)	123, 571
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	632
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	136
BciT130I	CCWGG	3 cut(s)	510, 576, 606
BciVI	GTATCC	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	3 cut(s)	221, 369, 727
BfuI	GTATCC	1 cut(s)	192
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	4 cut(s)	510, 576, 606, 675
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	3 cut(s)	257, 601, 602
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	4 cut(s)	510, 576, 606, 675
BmrI	ACTGGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	297, 440
BmuI	ACTGGG	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	632
BpmI	CTGGAG	2 cut(s)	597, 627
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	675
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	565, 604
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 505, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	3 cut(s)	260, 487, 532
Bse3DI	GCAATG	1 cut(s)	638
BseBI	CCWGG	3 cut(s)	510, 576, 606
BseDI	CCNNGG	2 cut(s)	565, 604
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	3 cut(s)	260, 487, 532
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	675
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	603
Bso31I	GGTCTC	1 cut(s)	64
Bsp120I	GGGCCC	1 cut(s)	601
Bsp1286I	GDGCHC	1 cut(s)	605
Bsp143I	GATC	4 cut(s)	45, 67, 561, 651
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	603
BspPI	GGATC	3 cut(s)	40, 556, 659
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	638
BsrI	ACTGG	3 cut(s)	260, 487, 532
BssECI	CCNNGG	2 cut(s)	565, 604
BssMI	GATC	4 cut(s)	45, 67, 561, 651
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	3 cut(s)	510, 576, 606
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	459, 549
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	4 cut(s)	48, 70, 564, 654
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	4 cut(s)	45, 67, 561, 651
BstNI	CCWGG	3 cut(s)	510, 576, 606
BstSCI	CCNGG	4 cut(s)	508, 574, 604, 673
BstSLI	GKGCMC	1 cut(s)	605
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	412
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	257, 601, 602
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	4 cut(s)	363, 386, 556, 688
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	2 cut(s)	459, 549
DpnI	GATC	4 cut(s)	47, 69, 563, 653
DpnII	GATC	4 cut(s)	45, 67, 561, 651
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	605
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	492
EcoO109I	RGGNCCY	2 cut(s)	601, 602
EcoRII	CCWGG	3 cut(s)	508, 574, 604
EcoT14I	CCWWGG	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	4 cut(s)	366, 389, 559, 691
FaiI	YATR	7 cut(s)	296, 364, 383, 387, 557, 657, 689
FatI	CATG	4 cut(s)	362, 385, 555, 687
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	3 cut(s)	221, 369, 727
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	2 cut(s)	597, 627
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	1 cut(s)	675
Hin1II	CATG	4 cut(s)	366, 389, 559, 691
HinfI	GANTC	2 cut(s)	188, 670
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	2 cut(s)	123, 571
Hpy166II	GTNNAC	2 cut(s)	217, 257
Hpy188I	TCNGA	2 cut(s)	142, 207
Hpy188III	TCNNGA	3 cut(s)	185, 321, 397
Hpy8I	GTNNAC	2 cut(s)	217, 257
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4V	TGCA	5 cut(s)	248, 366, 385, 431, 684
HpyF3I	CTNAG	2 cut(s)	459, 549
Hsp92II	CATG	4 cut(s)	366, 389, 559, 691
Kzo9I	GATC	4 cut(s)	45, 67, 561, 651
LmnI	GCTCC	6 cut(s)	129, 266, 323, 425, 526, 578
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	297, 440
MaeI	CTAG	3 cut(s)	221, 369, 727
MaeIII	GTNAC	3 cut(s)	371, 478, 613
MalI	GATC	4 cut(s)	47, 69, 563, 653
MboI	GATC	4 cut(s)	45, 67, 561, 651
MboII	GAAGA	5 cut(s)	422, 485, 607, 634, 637
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	605
MluCI	AATT	5 cut(s)	136, 195, 243, 315, 350
MlyI	GAGTC	1 cut(s)	664
MmeI	TCCRAC	2 cut(s)	244, 548
MnlI	CCTC	5 cut(s)	22, 536, 584, 602, 693
Mph1103I	ATGCAT	1 cut(s)	387
MseI	TTAA	2 cut(s)	417, 501
MslI	CAYNNNNRTG	1 cut(s)	692
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	4 cut(s)	510, 576, 606, 675
Mva1269I	GAATGC	1 cut(s)	82
MvaI	CCWGG	3 cut(s)	510, 576, 606
NciI	CCSGG	1 cut(s)	675
NdeII	GATC	4 cut(s)	45, 67, 561, 651
NlaIII	CATG	4 cut(s)	366, 389, 559, 691
NlaIV	GGNNCC	1 cut(s)	603
NsiI	ATGCAT	1 cut(s)	387
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
Psp6I	CCWGG	3 cut(s)	508, 574, 604
PspGI	CCWGG	3 cut(s)	508, 574, 604
PspN4I	GGNNCC	1 cut(s)	603
PspOMI	GGGCCC	1 cut(s)	601
PspPI	GGNCC	3 cut(s)	257, 601, 602
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	651
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	1 cut(s)	692
SaqAI	TTAA	2 cut(s)	417, 501
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	4 cut(s)	45, 67, 561, 651
Sau96I	GGNCC	3 cut(s)	257, 601, 602
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	4 cut(s)	510, 576, 606, 675
SduI	GDGCHC	1 cut(s)	605
SfaNI	GCATC	2 cut(s)	297, 440
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	692
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	5 cut(s)	136, 195, 243, 315, 350
SspMI	CTAG	3 cut(s)	221, 369, 727
StyD4I	CCNGG	4 cut(s)	508, 574, 604, 673
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	1 cut(s)	619
TasI	AATT	5 cut(s)	136, 195, 243, 315, 350
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	417, 501
Tru9I	TTAA	2 cut(s)	417, 501
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	423, 519
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	3 cut(s)	136, 315, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XspI	CTAG	3 cut(s)	221, 369, 727
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.