Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007592

Physical Location & Seq

Genomic Coordinates Reverse (-)

5399498 .. 5400189

Gene Structure 692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCGTGGCAAACTTACGTCGATGACCATCTGATGTGCGAAATCGAAGGCAACCACCTCTCCGCCGCCGCCATCATCGGCCAAGACGGCAGCGTTTGGGCCCAGAGCGCCACCTTCCCGCAGTTGAAGCCCGAAGAAGTTACTGGCATTGTGAATGACTTTAATGAACCTGGAACACTTGCTCCAACTGGGTTGTATCTTGGAGGCACTAAGTACATGGTGATCCAAGGAGAGCCGGGAGCTGTCATTAGAGGGAAGAAGGGCCCTGGAGGTGTTACTGTGAAGAAGACTACTCTGGCATTGCTCATTGGGATCTATGATGAGCCAATGACTCCTGGACAATGCAACATGATTGTGGAGAGGCTTGGCGATTATCTGGTTGAGCAGGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

132

Amino Acids

14.02

Weight (kDa)

4.61

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 131	7.8e-44	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19760 AT4G29350 AT5G56600 AT5G56600
fragaria_vesca	FvH4_1g06461
malus_domestica	MD02G1067900.v1.1 MD15G1199500.v1.1
prunus_persica	Prupe.7G217700_v2.0.a1 Prupe.7G217700_v2.0.a1
pyrus_communis	pycom15g17700
rosa_chinensis	RchiOBHm_Chr2g0092211
rosa_laevigata	RLG00000016286
rosa_multiflora	Rmu_sc0000524.1_g000024 Rmu_sc0005722.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149370
rosa_rugosa	Rorug02G0023700
rosa_samantha	Rh2BG069000 Rh4DG181000 Rh5DG465700
rosa_wichuraiana	Rw2G006270 Rw3G005780 Rw5G025200 Rw5G032250 Rw6G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	63, 66, 69, 119
AclWI	GGATC	2 cut(s)	217, 320
AcoI	YGGCCR	1 cut(s)	79
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	3 cut(s)	169, 265, 334
AloI	GAACNNNNNNTCC	2 cut(s)	166, 198
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
AlwI	GGATC	2 cut(s)	217, 320
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	3 cut(s)	79, 99, 262
ApaI	GGGCCC	2 cut(s)	103, 266
ApeKI	GCWGC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	4 cut(s)	99, 100, 262, 263
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	232
BaeGI	GKGCMC	2 cut(s)	103, 266
BanII	GRGCYC	2 cut(s)	103, 266
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	2 cut(s)	36, 80
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	3 cut(s)	171, 267, 336
BcnI	CCSGG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	3 cut(s)	66, 69, 91
BlsI	GCNGC	3 cut(s)	67, 70, 92
Bme1390I	CCNGG	4 cut(s)	171, 237, 267, 336
BmgT120I	GGNCC	4 cut(s)	99, 100, 262, 263
BmiI	GGNNCC	2 cut(s)	101, 264
BmrFI	CCNGG	4 cut(s)	171, 237, 267, 336
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	226, 265
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 166, 196
Bse1I	ACTGG	2 cut(s)	148, 193
Bse3DI	GCAATG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	3 cut(s)	171, 267, 336
BseDI	CCNNGG	2 cut(s)	226, 265
BseJI	GATNNNNATC	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	148, 193
BseSI	GKGCMC	2 cut(s)	103, 266
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	3 cut(s)	81, 101, 264
BsiSI	CCGG	1 cut(s)	236
BsnI	GGCC	3 cut(s)	81, 101, 264
Bsp120I	GGGCCC	2 cut(s)	99, 262
Bsp1286I	GDGCHC	2 cut(s)	103, 266
Bsp143I	GATC	2 cut(s)	222, 312
BspACI	CCGC	4 cut(s)	63, 66, 69, 119
BspANI	GGCC	3 cut(s)	81, 101, 264
BspLI	GGNNCC	2 cut(s)	101, 264
BspPI	GGATC	2 cut(s)	217, 320
BsrDI	GCAATG	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	148, 193
BssECI	CCNNGG	2 cut(s)	226, 265
BssMI	GATC	2 cut(s)	222, 312
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	3 cut(s)	171, 267, 336
Bst4CI	ACNGT	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	225, 315
BstMBI	GATC	2 cut(s)	222, 312
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 107, 127
BstNI	CCWGG	3 cut(s)	171, 267, 336
BstSCI	CCNGG	4 cut(s)	169, 235, 265, 334
BstSFI	CTRYAG	1 cut(s)	392
BstSLI	GKGCMC	2 cut(s)	103, 266
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	81, 101, 264
CaiI	CAGNNNCTG	1 cut(s)	391
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	4 cut(s)	99, 100, 262, 263
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	217, 349
CviJI	RGCY	8 cut(s)	81, 101, 130, 235, 242, 264, 325, 364
CviKI_1	RGCY	8 cut(s)	81, 101, 130, 235, 242, 264, 325, 364
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	224, 314
DpnII	GATC	2 cut(s)	222, 312
EaeI	YGGCCR	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	103, 266
EcoO109I	RGGNCCY	2 cut(s)	262, 263
EcoRII	CCWGG	3 cut(s)	169, 265, 334
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	103, 266
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	220, 352
FaiI	YATR	3 cut(s)	218, 318, 350
FatI	CATG	2 cut(s)	216, 348
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	66, 69, 91
FriOI	GRGCYC	2 cut(s)	103, 266
Fsp4HI	GCNGC	3 cut(s)	66, 69, 91
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	66, 69, 91
GsuI	CTGGAG	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	81, 101, 264
HapII	CCGG	1 cut(s)	236
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	220, 352
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	41, 124, 253
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 107, 127
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	220, 352
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	222, 312
LmnI	GCTCC	2 cut(s)	187, 239
Lsp1109I	GCAGC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	139, 274
MalI	GATC	2 cut(s)	224, 314
MboI	GATC	2 cut(s)	222, 312
MboII	GAAGA	4 cut(s)	146, 268, 295, 298
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	103, 266
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	5 cut(s)	68, 197, 245, 263, 354
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	4 cut(s)	171, 237, 267, 336
MvaI	CCWGG	3 cut(s)	171, 267, 336
MwoI	GCNNNNNNNGC	3 cut(s)	87, 107, 127
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	2 cut(s)	222, 312
NlaIII	CATG	2 cut(s)	220, 352
NlaIV	GGNNCC	2 cut(s)	101, 264
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	67, 70, 92
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	3 cut(s)	169, 265, 334
PspGI	CCWGG	3 cut(s)	169, 265, 334
PspN4I	GGNNCC	2 cut(s)	101, 264
PspOMI	GGGCCC	2 cut(s)	99, 262
PspPI	GGNCC	4 cut(s)	99, 100, 262, 263
PstNI	CAGNNNCTG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	66, 69, 91
Sau3AI	GATC	2 cut(s)	222, 312
Sau96I	GGNCC	4 cut(s)	99, 100, 262, 263
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	4 cut(s)	171, 237, 267, 336
SduI	GDGCHC	2 cut(s)	103, 266
SetI	ASST	6 cut(s)	21, 60, 116, 172, 244, 274
SfcI	CTRYAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	353
SsiI	CCGC	4 cut(s)	63, 66, 69, 119
StyD4I	CCNGG	4 cut(s)	169, 235, 265, 334
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	21, 45
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	68, 71
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.