AT4G29350

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007592
Physical Location & Seq
Forward (+)
14449888 .. 14451394
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29350.1

Sequence Viewer

Length: 396 bp
ATGTCGTGGCAATCATACGTCGATGACCATCTCATGTGCGAGGTCGAAGGCAACCACCTCACACACGCCGCCATCTTCGGCCAAGACGGCAGTGTCTGGGCTCAGAGCTCAGCTTTCCCTCAGTTGAAGCCTGCAGAGATAGCAGGAATCAACAAAGACTTTGAAGAAGCCGGACATCTTGCCCCAACCGGGCTATTCCTTGGCGGTGAGAAGTACATGGTTGTCCAAGGTGAGGCTGGAGCCGTCATCCGAGGGAAAAAGGGACCTGGTGGAGTCACTATCAAGAAGACTACTCAAGCTCTAGTCTTTGGTATCTATGATGAACCGATGACCGGAGGGCAATGCAACTTGGTCGTGGAGAGGCTCGGCGATTACCTTATCGAGTCTGGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007275 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0008154 GO:0009506 GO:0009507 GO:0009524 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009987 GO:0010229 GO:0010639 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022622 GO:0030029 GO:0030036 GO:0030054 GO:0030312 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0031974 GO:0031981 GO:0032271 GO:0032272 GO:0032501 GO:0032502 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033036 GO:0033043 GO:0034613 GO:0040007 GO:0042989 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045185 GO:0048046 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0055044 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0090567 GO:0090696 GO:0097435 GO:0099402 GO:0099568 GO:0110053 GO:1902903 GO:1902904
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

131

Amino Acids

14.0

Weight (kDa)

4.91

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 1 - 131 3e-42 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AciI CCGC 2 cut(s) 69, 204
AcoI YGGCCR 1 cut(s) 79
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 3 cut(s) 189, 232, 332
AgsI TTSAA 2 cut(s) 127, 164
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 3 cut(s) 108, 113, 299
AluI AGCT 3 cut(s) 108, 113, 299
Alw21I GWGCWC 1 cut(s) 110
AlwNI CAGNNNCTG 1 cut(s) 96
AoxI GGCC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 218, 242
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 103, 110
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 110
BccI CCATC 2 cut(s) 36, 80
BceAI ACGGC 2 cut(s) 103, 227
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 1 cut(s) 190
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 1 cut(s) 69
BlpI GCTNAGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 190, 267
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 241, 264
BmrFI CCNGG 2 cut(s) 190, 267
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 190
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 199, 226, 250
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 232, 332
Bse3DI GCAATG 1 cut(s) 347
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 199, 226, 250
BseGI GGATG 1 cut(s) 246
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 189, 232, 332
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 3 cut(s) 116, 123, 134
BshFI GGCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 3 cut(s) 171, 189, 333
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 3 cut(s) 189, 232, 332
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 103, 110
Bsp1720I GCTNAGC 1 cut(s) 109
BspACI CCGC 2 cut(s) 69, 204
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 3 cut(s) 115, 122, 133
BspLI GGNNCC 2 cut(s) 241, 264
BspMAI CTGCAG 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 199, 226, 250
BssT1I CCWWGG 2 cut(s) 199, 226
Bst2UI CCWGG 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 102, 109, 120
BstF5I GGATG 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 87, 140
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 188, 265
BstSFI CTRYAG 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 263
CsiI ACCWGGT 1 cut(s) 265
Csp6I GTAC 1 cut(s) 214
CviAII CATG 2 cut(s) 34, 217
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 102, 109, 120
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 108
Eco130I CCWWGG 2 cut(s) 199, 226
Eco24I GRGCYC 2 cut(s) 103, 110
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 199, 226
EcoT38I GRGCYC 2 cut(s) 103, 110
ErhI CCWWGG 2 cut(s) 199, 226
FaeI CATG 2 cut(s) 37, 220
FaiI YATR 4 cut(s) 16, 35, 218, 318
FaqI GGGAC 1 cut(s) 276
FatI CATG 2 cut(s) 33, 216
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 2 cut(s) 103, 110
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 302
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 81
HapII CCGG 3 cut(s) 171, 189, 333
Hin1II CATG 2 cut(s) 37, 220
HinfI GANTC 3 cut(s) 147, 273, 383
HpaII CCGG 3 cut(s) 171, 189, 333
HphI GGTGA 2 cut(s) 218, 242
Hpy188I TCNGA 2 cut(s) 105, 251
Hpy188III TCNNGA 1 cut(s) 283
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 134, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 140
HpyF3I CTNAG 3 cut(s) 102, 109, 120
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 37, 220
LmnI GCTCC 1 cut(s) 239
MabI ACCWGGT 1 cut(s) 265
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 274
MboII GAAGA 3 cut(s) 67, 176, 298
MhlI GDGCHC 2 cut(s) 103, 110
MlyI GAGTC 2 cut(s) 282, 392
MnlI CCTC 7 cut(s) 34, 68, 129, 226, 245, 329, 354
MspI CCGG 3 cut(s) 171, 189, 333
MspR9I CCNGG 2 cut(s) 190, 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 87, 140
NciI CCSGG 1 cut(s) 190
NlaIII CATG 2 cut(s) 37, 220
NlaIV GGNNCC 2 cut(s) 241, 264
NmeAIII GCCGAG 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 2 cut(s) 281, 391
PpsI GAGTC 2 cut(s) 281, 391
PpuMI RGGWCCY 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 241, 264
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 96
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacI GAGCTC 1 cut(s) 110
SatI GCNGC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 2 cut(s) 282, 392
ScrFI CCNGG 2 cut(s) 190, 267
SduI GDGCHC 2 cut(s) 103, 110
SetI ASST 9 cut(s) 21, 45, 60, 110, 115, 232, 268, 301, 378
SexAI ACCWGGT 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SsiI CCGC 2 cut(s) 69, 204
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 188, 265
StyI CCWWGG 2 cut(s) 199, 226
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 21, 45, 381
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 147
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.