Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007592

Physical Location & Seq

Genomic Coordinates Forward (+)

1875135 .. 1876847

Gene Structure 1713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGATGAAGAGGTTTAAGATGTGGAGCTACAAGGAAGGAGAACATCCCTTAGTGCATTTGGGTCCGATGAATAGGATATATGGCATTGAAGGACAATTCATAGATGAAATAGTGAGGGAGGAGAGCCCATTCAGGGCTACACATCCTGATGAGGCACACATTTTTTCCCTTCCCTTTAGTGTAGCCAACATTCTGCACCAAGTGTACCGGCCTGTCATCCAAAAAGAGAACTACCTCCGTGATCGCCTACAACGGATTGCCATGGACTACATAGGTGTTGTGGCACATAAGTACCCCTACTGGAATAGAAGCAATGGTGCTGACCATTTTATGGCTTCATGTCATGACTGGGGACCGCAGATTTCACTAGGTCAATCGGAACTCCTGAAGAACTTCATTAGAGTACTTTGCAATGCCAACACCTCAGAAGGGTTTGAACCTAAAAGAGACGTTTCACTACCTGAAGTTTTTGTACCTTCTGGAAAGCTTGGCCGGCCCAATTTTGGTCAAGCCCCACACAATCGCCGGATTCTGGCCTTCTTTGCCGGTGGTGTTCATAGACCGATTCGACCTATCTTGCTCCATCATTGGAAGGACAAAGATAACGAAGTTCAAGTCCACGAGACGCTTCCCGAAGGCATGAACTACACCGCATTAATGGGACAGAGCAAGTTTTGCTTGTGCGCTAGCGGTTTTGAAGTGCCAAGTGCAAGAGCTGTGGAGGCAATTTATGCAGGGTGTGTTCCAGTGATAATATCTGACCACTACACACTACCCTTTAGCGATGTCCTCGACTGGAGCCAATTTTCAATACAAATTACCGTCGCTAAAATACCAGAAATCAAGACCGTCTTACAAGCGATTCCAGATGAGGAATACCAAAAGATGCAGAGAAGGGTTTTAAAAGTTCAGAGGCATTTTGTACTCAACAGGCCGGCTAAGCCATTTGATGTGATTCACATGGTACTTCACTCAGTGTGGCTGAGACGAATTGACTTTAAGATTGGCTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

338

Amino Acids

38.99

Weight (kDa)

8.86

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	24 - 288	4e-58	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19760 AT4G29350 AT5G56600 AT5G56600
fragaria_vesca	FvH4_1g06461
malus_domestica	MD02G1067900.v1.1 MD15G1199500.v1.1
prunus_persica	Prupe.7G217700_v2.0.a1 Prupe.7G217700_v2.0.a1
pyrus_communis	pycom15g17700
rosa_chinensis	RchiOBHm_Chr2g0092211
rosa_laevigata	RLG00000016286
rosa_multiflora	Rmu_sc0000524.1_g000024 Rmu_sc0005722.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149370
rosa_rugosa	Rorug02G0023700
rosa_samantha	Rh2BG069000 Rh4DG181000 Rh5DG465700
rosa_wichuraiana	Rw2G006270 Rw3G005780 Rw5G025200 Rw5G032250 Rw6G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	3 cut(s)	356, 651, 690
AcoI	YGGCCR	1 cut(s)	490
AcuI	CTGAAG	2 cut(s)	407, 483
AdeI	CACNNNGTG	2 cut(s)	202, 976
AfaI	GTAC	6 cut(s)	206, 293, 405, 474, 924, 966
AfiI	CCNNNNNNNGG	5 cut(s)	133, 331, 429, 503, 532
AgsI	TTSAA	5 cut(s)	89, 437, 614, 698, 810
AluBI	AGCT	3 cut(s)	27, 487, 716
AluI	AGCT	3 cut(s)	27, 487, 716
Alw26I	GTCTC	3 cut(s)	441, 617, 979
AoxI	GGCC	5 cut(s)	209, 490, 494, 534, 932
ArsI	GACNNNNNNTTYG	2 cut(s)	600, 632
AseI	ATTAAT	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	3 cut(s)	62, 353, 495
AsuNHI	GCTAGC	1 cut(s)	686
AvaII	GGWCC	2 cut(s)	62, 353
BaeI	ACNNNNGTAYC	2 cut(s)	275, 308
BanII	GRGCYC	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	456, 488
BauI	CACGAG	1 cut(s)	620
BccI	CCATC	1 cut(s)	591
BcoDI	GTCTC	3 cut(s)	441, 617, 979
BfaI	CTAG	2 cut(s)	368, 687
BlpI	GCTNAGC	1 cut(s)	939
BmcAI	AGTACT	1 cut(s)	405
Bme18I	GGWCC	2 cut(s)	62, 353
BmgT120I	GGNCC	3 cut(s)	62, 353, 495
BmiI	GGNNCC	3 cut(s)	63, 354, 800
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	1 cut(s)	876
BmtI	GCTAGC	1 cut(s)	690
BmuI	ACTGGG	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	817
Bpu1102I	GCTNAGC	1 cut(s)	939
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 331, 429, 503, 532
Bse118I	RCCGGY	4 cut(s)	207, 492, 545, 934
Bse1I	ACTGG	4 cut(s)	305, 353, 746, 800
Bse3DI	GCAATG	2 cut(s)	319, 418
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	43, 142, 216
BseLI	CCNNNNNNNGG	5 cut(s)	133, 331, 429, 503, 532
BseMI	GCAATG	2 cut(s)	319, 418
BseMII	CTCAG	3 cut(s)	438, 974, 987
BseNI	ACTGG	4 cut(s)	305, 353, 746, 800
BseRI	GAGGAG	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	5 cut(s)	211, 492, 496, 536, 934
BsiSI	CCGG	5 cut(s)	208, 493, 526, 546, 935
BslFI	GGGAC	2 cut(s)	366, 675
BslI	CCNNNNNNNGG	5 cut(s)	133, 331, 429, 503, 532
BsmAI	GTCTC	3 cut(s)	441, 617, 979
BsmBI	CGTCTC	3 cut(s)	441, 617, 979
BsmFI	GGGAC	2 cut(s)	366, 675
BsnI	GGCC	5 cut(s)	211, 492, 496, 536, 934
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	241
Bsp1720I	GCTNAGC	1 cut(s)	939
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	3 cut(s)	356, 651, 690
BspANI	GGCC	5 cut(s)	211, 492, 496, 536, 934
BspCNI	CTCAG	3 cut(s)	437, 975, 986
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	3 cut(s)	63, 354, 800
BspOI	GCTAGC	1 cut(s)	690
BsrDI	GCAATG	2 cut(s)	319, 418
BsrFI	RCCGGY	4 cut(s)	207, 492, 545, 934
BsrI	ACTGG	4 cut(s)	305, 353, 746, 800
BssAI	RCCGGY	4 cut(s)	207, 492, 545, 934
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	241
BssSI	CACGAG	1 cut(s)	620
BssT1I	CCWWGG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	620
Bst4CI	ACNGT	2 cut(s)	823, 850
Bst6I	CTCTTC	1 cut(s)	2
BstAPI	GCANNNNNTGC	2 cut(s)	675, 731
BstC8I	GCNNGC	3 cut(s)	494, 688, 936
BstDEI	CTNAG	5 cut(s)	49, 424, 939, 973, 983
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	43, 142, 216
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	3 cut(s)	441, 617, 979
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	6 cut(s)	493, 542, 675, 722, 731, 940
BsuRI	GGCC	5 cut(s)	211, 492, 496, 536, 934
BtgI	CCRYGG	1 cut(s)	261
BtgZI	GCGATG	1 cut(s)	798
BtsCI	GGATG	3 cut(s)	43, 142, 216
BtsIMutI	CAGTG	2 cut(s)	753, 981
Cac8I	GCNNGC	3 cut(s)	494, 688, 936
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	1 cut(s)	686
Cfr10I	RCCGGY	4 cut(s)	207, 492, 545, 934
Cfr13I	GGNCC	3 cut(s)	62, 353, 495
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	6 cut(s)	205, 292, 404, 473, 923, 965
CspCI	CAANNNNNGTGG	2 cut(s)	699, 734
CviAII	CATG	5 cut(s)	262, 339, 344, 640, 961
CviQI	GTAC	6 cut(s)	205, 292, 404, 473, 923, 965
DdeI	CTNAG	5 cut(s)	49, 424, 939, 973, 983
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
DraI	TTTAAA	1 cut(s)	903
DraIII	CACNNNGTG	2 cut(s)	202, 976
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	62, 353
Eco57I	CTGAAG	2 cut(s)	407, 483
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	3 cut(s)	441, 617, 979
FaeI	CATG	5 cut(s)	265, 342, 347, 643, 964
FalI	AAGNNNNNCTT	4 cut(s)	662, 694, 836, 868
FaqI	GGGAC	2 cut(s)	366, 675
FatI	CATG	5 cut(s)	261, 338, 343, 639, 960
FokI	GGATG	3 cut(s)	30, 129, 203
FriOI	GRGCYC	1 cut(s)	128
FseI	GGCCGGCC	1 cut(s)	496
FspBI	CTAG	2 cut(s)	368, 687
GlaI	GCGC	1 cut(s)	685
GsuI	CTGGAG	1 cut(s)	817
HaeIII	GGCC	5 cut(s)	211, 492, 496, 536, 934
HapII	CCGG	5 cut(s)	208, 493, 526, 546, 935
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	1 cut(s)	686
Hin1II	CATG	5 cut(s)	265, 342, 347, 643, 964
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	4 cut(s)	529, 565, 862, 955
HpaII	CCGG	5 cut(s)	208, 493, 526, 546, 935
Hpy166II	GTNNAC	2 cut(s)	205, 619
Hpy188I	TCNGA	5 cut(s)	66, 379, 427, 760, 912
Hpy188III	TCNNGA	7 cut(s)	146, 344, 385, 480, 632, 844, 866
Hpy8I	GTNNAC	2 cut(s)	205, 619
Hpy99I	CGWCG	1 cut(s)	827
HpyAV	CCTTC	9 cut(s)	29, 83, 179, 422, 486, 547, 586, 629, 888
HpyCH4III	ACNGT	2 cut(s)	823, 850
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	6 cut(s)	55, 196, 411, 710, 734, 889
HpyF10VI	GCNNNNNNNGC	6 cut(s)	493, 542, 675, 722, 731, 940
HpyF3I	CTNAG	5 cut(s)	49, 424, 939, 973, 983
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	5 cut(s)	265, 342, 347, 643, 964
HspAI	GCGC	1 cut(s)	684
KroI	GCCGGC	2 cut(s)	492, 934
KroNI	GCCGGC	2 cut(s)	494, 936
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	3 cut(s)	24, 585, 798
LweI	GCATC	1 cut(s)	876
MaeI	CTAG	2 cut(s)	368, 687
MaeII	ACGT	1 cut(s)	450
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	19, 400
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	6 cut(s)	95, 499, 726, 803, 816, 990
MroNI	GCCGGC	2 cut(s)	492, 934
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	4 cut(s)	15, 656, 902, 999
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	5 cut(s)	208, 493, 526, 546, 935
MwoI	GCNNNNNNNGC	6 cut(s)	493, 542, 675, 722, 731, 940
NaeI	GCCGGC	2 cut(s)	494, 936
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	241
NgoMIV	GCCGGC	2 cut(s)	492, 934
NheI	GCTAGC	1 cut(s)	686
NlaIII	CATG	5 cut(s)	265, 342, 347, 643, 964
NlaIV	GGNNCC	3 cut(s)	63, 354, 800
PagI	TCATGA	1 cut(s)	343
PdiI	GCCGGC	2 cut(s)	494, 936
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	4 cut(s)	529, 565, 862, 955
PflMI	CCANNNNNTGG	1 cut(s)	331
PshBI	ATTAAT	1 cut(s)	656
PspN4I	GGNNCC	3 cut(s)	63, 354, 800
PspPI	GGNCC	3 cut(s)	62, 353, 495
RigI	GGCCGGCC	1 cut(s)	496
RsaI	GTAC	6 cut(s)	206, 293, 405, 474, 924, 966
RsaNI	GTAC	6 cut(s)	205, 292, 404, 473, 923, 965
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	4 cut(s)	15, 656, 902, 999
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	3 cut(s)	62, 353, 495
ScaI	AGTACT	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	128
SfaNI	GCATC	1 cut(s)	876
SinI	GGWCC	2 cut(s)	62, 353
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	6 cut(s)	95, 499, 726, 803, 816, 990
SsiI	CCGC	3 cut(s)	356, 651, 690
SspMI	CTAG	2 cut(s)	368, 687
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	823, 850
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	568, 792
TaqII	GACCGA	1 cut(s)	577
TasI	AATT	6 cut(s)	95, 499, 726, 803, 816, 990
TatI	WGTACW	2 cut(s)	403, 922
TfiI	GAWTC	4 cut(s)	529, 565, 862, 955
Tru1I	TTAA	4 cut(s)	15, 656, 902, 999
Tru9I	TTAA	4 cut(s)	15, 656, 902, 999
TscAI	CASTG	2 cut(s)	753, 981
TspDTI	ATGAA	8 cut(s)	20, 83, 88, 120, 327, 385, 545, 656
TspGWI	ACGGA	2 cut(s)	227, 268
TspRI	CASTG	2 cut(s)	753, 981
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	62, 353
VspI	ATTAAT	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	2 cut(s)	368, 687
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.