Rh4DG181000

Belongs to the glycosyltransferase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
35959016 .. 35982683
23668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG181000.1

Sequence Viewer

Length: 1371 bp
ATGTCAGTGGAAGGGTCTTGGAGCCAGAATGCCATTCAAGCAACAAATGCATGGCTTAGAGAGGGGCTTAAACAATGGTGTATCACCAGGGATCTGAAGTGGAGGGTTCCAGTTCCACATGATAACTTCAGGGACAAGACCCAAGCTCCACTGCAACTCTTCGCTCTTCGCCCTCCCCCAAGCCACTTCAGAACAGATCGATTCATTCGATCCCCAAAACCAGCAAAACAGACCCAAGCGACCGCAGCTCTTCGCTCTTCACCATCCCCCAAGCCATCGCAGTTCCACCGCAGCTCTTCGCTCGTCGCCCTCCCCCAAGCCACCGCAGAACAGATCGATTCATTCGATCCCCAAAACCAGCAAAACAGACCCAGCCACCGCAGCTCTTCGCCCTCCCCCAAGCCACCGCAGCTCTTCGCTCTTCGTACTCCCCCAAGCCACCGCAGCTCCACCGCAGCTCTTCGGCCTTCGCCTTCCCTCAAGCCACCACAGCTCCACCGCAGGTCTTCGCTCTCCGCCCTCCCCCAAGCCACCGCGTCTCTGCCTCAGACTCCCTCTGCTCCGTGCCTCTGCCTCAGACTCCCTCTAATTTCTAAACTTCAACCGCAATTAATCTTCAGCGCCACCTTCCCTCAGTTGAAGCCTGAAGAAGTTACTGGCATTGTGAATGACTTTAATGAACCTGGAACACTTGCTCCAACTGGGTTGTATCTTGGAGGCACTAAGTACATGGTGATCCAAGGAGAGCCTGGAGCTGTCATTAGAGGGAAGAAGGGCCCTAGAGGTGTTACTGTGAAGAAGACTACTCTGGCATTGCTCATTGGGATCTATGATGAGCCAATGACTCCCGGACAATGCAACATGATTGTGGAGAGGCTTGCCCCGGCCCACCAGCCCACCGACGATTCTCCGCCGCTCAGAAACCTCTTAGCCTGGGACGGAGCCTCTCGCCTTTACTTCTGGGACTCGAATGACCTCTGCCTTCACCGGATCTCCCTCCGCCTCGGTGAGCCTGAGCCGACCTCCGTCTTCGCCGCTTCACCCTCCAAGGCGCTTACTAATGGTTTGCTTGTGGACCCTCATGATCAGCAATCAATTGCTAATGCACTGCTGAAGTTGTTATCAGAAAAGAATTTATGGGTTGAGTGCAGAAAGAATGGTTGGAAAAACATACACCTTTTCTCATGGCCTGAACACTGCCGAACCTACTTGACTAGAGTAGCAGCCTGCCGCATGAGACATCCACAGTGGCAGACTGACACCCCGGAGGATGAAATGGCTGCTGAAGAGTCCCTCAATGATTCTCTTAAGGACGTGCAAGATATGTCTCTTAGGCTCTCAGTTGATGGGGACAAATCCTCACTGAATTAA

Protein Analysis

456

Amino Acids

50.67

Weight (kDa)

9.46

Isoelectric Point (pI)

64.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1g PF09334 5 - 42 3.6e-07 tRNA synthetases class I (M)
Profilin PF00235 209 - 294 2.1e-23 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 492
AccBSI CCGCTC 1 cut(s) 916
AccII CGCG 1 cut(s) 536
AclWI GGATC 6 cut(s) 99, 204, 341, 730, 833, 998
AcsI RAATTY 1 cut(s) 1132
AcuI CTGAAG 7 cut(s) 112, 116, 172, 601, 666, 1133, 1305
AfaI GTAC 2 cut(s) 427, 728
AflII CTTAAG 1 cut(s) 1307
AgsI TTSAA 3 cut(s) 38, 602, 640
AjiI CACGTC 1 cut(s) 1315
AjnI CCWGG 4 cut(s) 86, 682, 748, 932
AjuI GAANNNNNNNTTGG 2 cut(s) 1144, 1176
AloI GAACNNNNNNTCC 2 cut(s) 679, 711
AluBI AGCT 9 cut(s) 146, 248, 294, 384, 412, 447, 458, 493, 755
AluI AGCT 9 cut(s) 146, 248, 294, 384, 412, 447, 458, 493, 755
Alw26I GTCTC 3 cut(s) 543, 1231, 1332
AlwI GGATC 6 cut(s) 99, 204, 341, 730, 833, 998
AoxI GGCC 4 cut(s) 464, 775, 885, 1187
ApaI GGGCCC 1 cut(s) 779
ApeKI GCWGC 8 cut(s) 245, 291, 381, 409, 444, 455, 1223, 1280
ApoI RAATTY 1 cut(s) 1132
AseI ATTAAT 1 cut(s) 611
AspLEI GCGC 2 cut(s) 623, 1054
AspS9I GGNCC 4 cut(s) 775, 776, 886, 1075
AsuC2I CCSGG 3 cut(s) 849, 884, 1265
AsuHPI GGTGA 6 cut(s) 76, 252, 745, 977, 1019, 1032
AvaII GGWCC 1 cut(s) 1075
BaeGI GKGCMC 1 cut(s) 779
BanII GRGCYC 1 cut(s) 779
BbsI GAAGAC 3 cut(s) 498, 806, 1021
BbvI GCAGC 8 cut(s) 257, 303, 393, 421, 456, 467, 1235, 1267
BccI CCATC 3 cut(s) 271, 283, 1340
BciT130I CCWGG 4 cut(s) 88, 684, 750, 934
BclI TGATCA 1 cut(s) 1084
BcnI CCSGG 3 cut(s) 849, 884, 1265
BcoDI GTCTC 3 cut(s) 543, 1231, 1332
BfaI CTAG 2 cut(s) 780, 1215
BfoI RGCGCY 2 cut(s) 624, 1055
BfrI CTTAAG 1 cut(s) 1307
BfuAI ACCTGC 1 cut(s) 492
Bme1390I CCNGG 7 cut(s) 88, 684, 750, 849, 884, 934, 1265
Bme18I GGWCC 1 cut(s) 1075
BmgBI CACGTC 1 cut(s) 1315
BmgT120I GGNCC 4 cut(s) 775, 776, 886, 1075
BmiI GGNNCC 5 cut(s) 23, 108, 777, 943, 1077
BmrFI CCNGG 7 cut(s) 88, 684, 750, 849, 884, 934, 1265
BmrI ACTGGG 1 cut(s) 711
BmuI ACTGGG 1 cut(s) 711
BoxI GACNNNNGTC 1 cut(s) 1025
BpiI GAAGAC 3 cut(s) 498, 806, 1021
BplI GAGNNNNNCTC 2 cut(s) 1007, 1039
BpmI CTGGAG 1 cut(s) 771
Bpu10I CCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 464
BpuMI CCSGG 3 cut(s) 849, 884, 1265
Bsa29I ATCGAT 2 cut(s) 199, 336
BsaJI CCNNGG 7 cut(s) 87, 739, 882, 933, 1003, 1047, 1263
BsaWI WCCGGW 1 cut(s) 987
Bse1I ACTGG 3 cut(s) 110, 661, 706
Bse3DI GCAATG 1 cut(s) 812
BseBI CCWGG 4 cut(s) 88, 684, 750, 934
BseCI ATCGAT 2 cut(s) 199, 336
BseDI CCNNGG 7 cut(s) 87, 739, 882, 933, 1003, 1047, 1263
BseGI GGATG 3 cut(s) 263, 1240, 1276
BseMI GCAATG 1 cut(s) 812
BseMII CTCAG 6 cut(s) 560, 589, 647, 931, 1005, 1353
BseNI ACTGG 3 cut(s) 110, 661, 706
BseSI GKGCMC 1 cut(s) 779
BseXI GCAGC 8 cut(s) 257, 303, 393, 421, 456, 467, 1235, 1267
BseYI CCCAGC 1 cut(s) 371
BsgI GTGCAG 1 cut(s) 1168
Bsh1236I CGCG 1 cut(s) 536
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 4 cut(s) 466, 777, 887, 1189
BshVI ATCGAT 2 cut(s) 199, 336
BsiEI CGRYCG 1 cut(s) 243
BsiSI CCGG 4 cut(s) 849, 884, 988, 1265
BslFI GGGAC 5 cut(s) 146, 950, 977, 1276, 1364
BsmAI GTCTC 3 cut(s) 543, 1231, 1332
BsmBI CGTCTC 1 cut(s) 543
BsmFI GGGAC 5 cut(s) 146, 950, 977, 1276, 1364
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 4 cut(s) 466, 777, 887, 1189
Bsp120I GGGCCC 1 cut(s) 775
Bsp1286I GDGCHC 1 cut(s) 779
Bsp143I GATC 9 cut(s) 91, 196, 209, 333, 346, 735, 825, 990, 1084
BspANI GGCC 4 cut(s) 466, 777, 887, 1189
BspCNI CTCAG 6 cut(s) 559, 588, 646, 930, 1006, 1352
BspDI ATCGAT 2 cut(s) 199, 336
BspFNI CGCG 1 cut(s) 536
BspHI TCATGA 1 cut(s) 1081
BspLI GGNNCC 5 cut(s) 23, 108, 777, 943, 1077
BspMI ACCTGC 1 cut(s) 492
BspPI GGATC 6 cut(s) 99, 204, 341, 730, 833, 998
BspQI GCTCTTC 8 cut(s) 171, 255, 262, 301, 391, 419, 426, 465
BspTI CTTAAG 1 cut(s) 1307
BsrBI CCGCTC 1 cut(s) 916
BsrDI GCAATG 1 cut(s) 812
BsrI ACTGG 3 cut(s) 110, 661, 706
BssECI CCNNGG 7 cut(s) 87, 739, 882, 933, 1003, 1047, 1263
BssMI GATC 9 cut(s) 91, 196, 209, 333, 346, 735, 825, 990, 1084
BssT1I CCWWGG 2 cut(s) 739, 1047
Bst2UI CCWGG 4 cut(s) 88, 684, 750, 934
Bst4CI ACNGT 2 cut(s) 793, 1248
BstAFI CTTAAG 1 cut(s) 1307
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 879, 1228
BstF5I GGATG 3 cut(s) 263, 1240, 1276
BstFNI CGCG 1 cut(s) 536
BstH2I RGCGCY 2 cut(s) 624, 1055
BstHHI GCGC 2 cut(s) 623, 1054
BstKTI GATC 9 cut(s) 94, 199, 212, 336, 349, 738, 828, 993, 1087
BstMAI GTCTC 3 cut(s) 543, 1231, 1332
BstMBI GATC 9 cut(s) 91, 196, 209, 333, 346, 735, 825, 990, 1084
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 7 cut(s) 38, 47, 245, 381, 409, 444, 490
BstNI CCWGG 4 cut(s) 88, 684, 750, 934
BstPAI GACNNNNGTC 1 cut(s) 1025
BstSCI CCNGG 7 cut(s) 86, 682, 748, 847, 882, 932, 1263
BstSLI GKGCMC 1 cut(s) 779
BstUI CGCG 1 cut(s) 536
BstV1I GCAGC 8 cut(s) 257, 303, 393, 421, 456, 467, 1235, 1267
BstV2I GAAGAC 3 cut(s) 498, 806, 1021
BstX2I RGATCY 3 cut(s) 91, 825, 990
BstYI RGATCY 3 cut(s) 91, 825, 990
Bsu15I ATCGAT 2 cut(s) 199, 336
BsuRI GGCC 4 cut(s) 466, 777, 887, 1189
BsuTUI ATCGAT 2 cut(s) 199, 336
BtgZI GCGATG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 1315
BtsCI GGATG 3 cut(s) 263, 1240, 1276
BtsI GCAGTG 3 cut(s) 149, 1106, 1195
BtsIMutI CAGTG 6 cut(s) 12, 149, 1106, 1195, 1253, 1361
BveI ACCTGC 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 879, 1228
CciI TCATGA 1 cut(s) 1081
CfoI GCGC 2 cut(s) 623, 1054
Cfr13I GGNCC 4 cut(s) 775, 776, 886, 1075
ClaI ATCGAT 2 cut(s) 199, 336
CseI GACGC 1 cut(s) 525
Csp6I GTAC 2 cut(s) 426, 727
CviAII CATG 7 cut(s) 51, 119, 730, 862, 1082, 1185, 1234
CviQI GTAC 2 cut(s) 426, 727
DpnI GATC 9 cut(s) 93, 198, 211, 335, 348, 737, 827, 992, 1086
DpnII GATC 9 cut(s) 91, 196, 209, 333, 346, 735, 825, 990, 1084
EciI GGCGGA 3 cut(s) 505, 900, 989
Eco130I CCWWGG 2 cut(s) 739, 1047
Eco24I GRGCYC 1 cut(s) 779
Eco47I GGWCC 1 cut(s) 1075
Eco57I CTGAAG 7 cut(s) 112, 116, 172, 601, 666, 1133, 1305
EcoO109I RGGNCCY 2 cut(s) 775, 776
EcoRII CCWGG 4 cut(s) 86, 682, 748, 932
EcoT14I CCWWGG 2 cut(s) 739, 1047
EcoT22I ATGCAT 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 779
ErhI CCWWGG 2 cut(s) 739, 1047
Esp3I CGTCTC 1 cut(s) 543
FaeI CATG 7 cut(s) 54, 122, 733, 865, 1085, 1188, 1237
FaqI GGGAC 5 cut(s) 146, 950, 977, 1276, 1364
FatI CATG 7 cut(s) 50, 118, 729, 861, 1081, 1184, 1233
FbaI TGATCA 1 cut(s) 1084
FokI GGATG 3 cut(s) 250, 1227, 1283
FriOI GRGCYC 1 cut(s) 779
FspBI CTAG 2 cut(s) 780, 1215
GlaI GCGC 2 cut(s) 622, 1053
GsaI CCCAGC 1 cut(s) 375
GsuI CTGGAG 1 cut(s) 771
HaeII RGCGCY 2 cut(s) 624, 1055
HaeIII GGCC 4 cut(s) 466, 777, 887, 1189
HapII CCGG 4 cut(s) 849, 884, 988, 1265
HgaI GACGC 1 cut(s) 525
HhaI GCGC 2 cut(s) 623, 1054
Hin1II CATG 7 cut(s) 54, 122, 733, 865, 1085, 1188, 1237
Hin6I GCGC 2 cut(s) 621, 1052
HinP1I GCGC 2 cut(s) 621, 1052
HinfI GANTC 9 cut(s) 201, 338, 550, 579, 844, 905, 965, 1289, 1301
HpaII CCGG 4 cut(s) 849, 884, 988, 1265
HphI GGTGA 6 cut(s) 76, 252, 745, 977, 1019, 1032
Hpy166II GTNNAC 1 cut(s) 1075
Hpy188I TCNGA 6 cut(s) 96, 191, 549, 578, 920, 1126
Hpy188III TCNNGA 1 cut(s) 1082
Hpy8I GTNNAC 1 cut(s) 1075
Hpy99I CGWCG 2 cut(s) 308, 905
HpyAV CCTTC 6 cut(s) 5, 477, 483, 637, 766, 992
HpyCH4III ACNGT 2 cut(s) 793, 1248
HpyCH4IV ACGT 1 cut(s) 1314
HpyCH4V TGCA 6 cut(s) 50, 154, 858, 1106, 1149, 1318
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 47, 245, 381, 409, 444, 490
HpySE526I ACGT 1 cut(s) 1314
Hsp92II CATG 7 cut(s) 54, 122, 733, 865, 1085, 1188, 1237
HspAI GCGC 2 cut(s) 621, 1052
Ksp22I TGATCA 1 cut(s) 1084
Kzo9I GATC 9 cut(s) 91, 196, 209, 333, 346, 735, 825, 990, 1084
LguI GCTCTTC 8 cut(s) 171, 255, 262, 301, 391, 419, 426, 465
LmnI GCTCC 8 cut(s) 21, 151, 452, 498, 565, 700, 752, 941
Lsp1109I GCAGC 8 cut(s) 257, 303, 393, 421, 456, 467, 1235, 1267
MaeI CTAG 2 cut(s) 780, 1215
MaeII ACGT 1 cut(s) 1314
MaeIII GTNAC 2 cut(s) 652, 787
MalI GATC 9 cut(s) 93, 198, 211, 335, 348, 737, 827, 992, 1086
MbiI CCGCTC 1 cut(s) 916
MboI GATC 9 cut(s) 91, 196, 209, 333, 346, 735, 825, 990, 1084
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 3 cut(s) 91, 825, 990
MhlI GDGCHC 1 cut(s) 779
MluCI AATT 5 cut(s) 588, 608, 1095, 1132, 1366
MlyI GAGTC 5 cut(s) 544, 573, 838, 959, 1298
MmeI TCCRAC 2 cut(s) 722, 1142
Mph1103I ATGCAT 1 cut(s) 52
MseI TTAA 5 cut(s) 69, 611, 675, 1308, 1369
MslI CAYNNNNRTG 1 cut(s) 866
MspCI CTTAAG 1 cut(s) 1307
MspI CCGG 4 cut(s) 849, 884, 988, 1265
MspR9I CCNGG 7 cut(s) 88, 684, 750, 849, 884, 934, 1265
MunI CAATTG 1 cut(s) 1095
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 4 cut(s) 88, 684, 750, 934
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 7 cut(s) 38, 47, 245, 381, 409, 444, 490
NciI CCSGG 3 cut(s) 849, 884, 1265
NdeII GATC 9 cut(s) 91, 196, 209, 333, 346, 735, 825, 990, 1084
NlaIII CATG 7 cut(s) 54, 122, 733, 865, 1085, 1188, 1237
NlaIV GGNNCC 5 cut(s) 23, 108, 777, 943, 1077
NsiI ATGCAT 1 cut(s) 52
PagI TCATGA 1 cut(s) 1081
PciSI GCTCTTC 8 cut(s) 171, 255, 262, 301, 391, 419, 426, 465
PcsI WCGNNNNNNNCGW 2 cut(s) 205, 342
PctI GAATGC 1 cut(s) 34
PfeI GAWTC 4 cut(s) 201, 338, 905, 1301
PfoI TCCNGGA 1 cut(s) 847
PleI GAGTC 5 cut(s) 544, 573, 838, 959, 1297
PpsI GAGTC 5 cut(s) 544, 573, 838, 959, 1297
PshAI GACNNNNGTC 1 cut(s) 1025
PshBI ATTAAT 1 cut(s) 611
Psp6I CCWGG 4 cut(s) 86, 682, 748, 932
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 4 cut(s) 86, 682, 748, 932
PspN4I GGNNCC 5 cut(s) 23, 108, 777, 943, 1077
PspOMI GGGCCC 1 cut(s) 775
PspPI GGNCC 4 cut(s) 775, 776, 886, 1075
PsuI RGATCY 3 cut(s) 91, 825, 990
RsaI GTAC 2 cut(s) 427, 728
RsaNI GTAC 2 cut(s) 426, 727
RseI CAYNNNNRTG 1 cut(s) 866
SapI GCTCTTC 8 cut(s) 171, 255, 262, 301, 391, 419, 426, 465
SaqAI TTAA 5 cut(s) 69, 611, 675, 1308, 1369
Sau3AI GATC 9 cut(s) 91, 196, 209, 333, 346, 735, 825, 990, 1084
Sau96I GGNCC 4 cut(s) 775, 776, 886, 1075
SchI GAGTC 5 cut(s) 544, 573, 838, 959, 1298
ScrFI CCNGG 7 cut(s) 88, 684, 750, 849, 884, 934, 1265
SduI GDGCHC 1 cut(s) 779
SinI GGWCC 1 cut(s) 1075
SmiMI CAYNNNNRTG 1 cut(s) 866
SmlI CTYRAG 2 cut(s) 479, 1307
SmoI CTYRAG 2 cut(s) 479, 1307
Sse9I AATT 5 cut(s) 588, 608, 1095, 1132, 1366
SspMI CTAG 2 cut(s) 780, 1215
StyD4I CCNGG 7 cut(s) 86, 682, 748, 847, 882, 932, 1263
StyI CCWWGG 2 cut(s) 739, 1047
TaaI ACNGT 2 cut(s) 793, 1248
TaiI ACGT 1 cut(s) 1317
TaqI TCGA 5 cut(s) 199, 208, 336, 345, 968
TasI AATT 5 cut(s) 588, 608, 1095, 1132, 1366
TatI WGTACW 1 cut(s) 726
TauI GCSGC 3 cut(s) 916, 1037, 1233
TfiI GAWTC 4 cut(s) 201, 338, 905, 1301
Tru1I TTAA 5 cut(s) 69, 611, 675, 1308, 1369
Tru9I TTAA 5 cut(s) 69, 611, 675, 1308, 1369
TscAI CASTG 6 cut(s) 12, 156, 1113, 1202, 1253, 1368
TseI GCWGC 8 cut(s) 245, 291, 381, 409, 444, 455, 1223, 1280
TspDTI ATGAA 4 cut(s) 193, 330, 693, 1287
TspGWI ACGGA 3 cut(s) 552, 954, 1015
TspRI CASTG 6 cut(s) 12, 156, 1113, 1202, 1253, 1368
Vha464I CTTAAG 1 cut(s) 1307
VpaK11BI GGWCC 1 cut(s) 1075
VspI ATTAAT 1 cut(s) 611
XapI RAATTY 1 cut(s) 1132
XcmI CCANNNNNNNNNTGG 1 cut(s) 746
XspI CTAG 2 cut(s) 780, 1215
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.