Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005722.1

Orthogroup ID

OG0007592

Physical Location & Seq

Genomic Coordinates Reverse (-)

49985 .. 51869

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005722.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ctgcaactcttcgctcttcgccctcccccaagccaccgcagaacagatcgattcattcgatccccaaaaccagcaaaacagacccaagcgaccgcagctcttcgctcttcaccatcccccaagccatcgcagctccaccgcagctcttcgctcgtcgccctcccccaagccaccgcagaacagatcgattcattcgatccccaaaaccagcaaaacagacccaagcgaccgcagctcttcgctcttcaccatcccccaagccatcgcagctccaccgcagctcttcgctcgtcgccctcccccaagccaccgcagaacagatcgattcattcgatccccaaaaccagcaaaacagacccaagcgaccgcagctcttcgctcttcaccatcccccaagccatcgcagctccaccgcagctcttcgctcgtcgccctcccccaagccaccgcagaacagatcgattcattcgatccccaaaaccagcaaaacagacccaagcgaccgcagctcttcgctcttcaccatcccccaagccatcgcagctccaccgcagctcttcgctcgtcgccctcccccaagccaccgcagaacagatcgattcattcgatccccaaaaccagcaaaacagacccaagcgaccgcagctcttcgctcttcaccatcccccaagccatcgcagctccaccgcagctcttcgctcgtcgccctcccccaagccaccgcagaacagatcgattcattcgatccccaaaaccagcaaaacagacccagccaccgcagcttttcgctcgtctccctcgcccaagccaccgcagctcttcgctcttcgtactcccccaagccaccgcacctcttcggccttcgccttccctcaagccaccacagctccaccccaggtcttcgctctccgccctcccccaagccatcgcgtctctttgaagcctgaagaagttactggcattgtgaatgactttaatgaacctggaacacttgctccaactgggttgtatcttggaggcactaagtacatggtgatccaaggagagcctggagctgtcattagagggaagaagggccctggaggtgttactgtgaagaagactactctggcattgctcattgggatctatgatgagccaatgactcccggacaatgcaacatgattgtggagaggcttggcgattatctggttgagcaggccccggcccaccagcccactgacgattctccgccgctcagaaacctcttagcctgggacggagcctctcgcctttacttctgggactcgaatgacctctgccttcaccggatctccctccgcctcggcgagcctgagccgacctccgtcttcgccgcttcaccctccaaggtttcatcgctcttttgccctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

465

Amino Acids

50.73

Weight (kDa)

10.93

Isoelectric Point (pI)

84.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19760 AT4G29350 AT5G56600 AT5G56600
fragaria_vesca	FvH4_1g06461
malus_domestica	MD02G1067900.v1.1 MD15G1199500.v1.1
prunus_persica	Prupe.7G217700_v2.0.a1 Prupe.7G217700_v2.0.a1
pyrus_communis	pycom15g17700
rosa_chinensis	RchiOBHm_Chr2g0092211
rosa_laevigata	RLG00000016286
rosa_multiflora	Rmu_sc0000524.1_g000024 Rmu_sc0005722.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149370
rosa_rugosa	Rorug02G0023700
rosa_samantha	Rh2BG069000 Rh4DG181000 Rh5DG465700
rosa_wichuraiana	Rw2G006270 Rw3G005780 Rw5G025200 Rw5G032250 Rw6G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1237
AccII	CGCG	1 cut(s)	930
AclWI	GGATC	9 cut(s)	54, 191, 328, 465, 602, 739, 1030, 1133, 1319
AcuI	CTGAAG	1 cut(s)	966
AfaI	GTAC	2 cut(s)	832, 1028
AgsI	TTSAA	1 cut(s)	940
AjnI	CCWGG	5 cut(s)	894, 982, 1048, 1078, 1253
AloI	GAACNNNNNNTCC	2 cut(s)	979, 1011
Alw26I	GTCTC	2 cut(s)	798, 937
AlwI	GGATC	9 cut(s)	54, 191, 328, 465, 602, 739, 1030, 1133, 1319
AoxI	GGCC	4 cut(s)	858, 1075, 1200, 1206
ApaI	GGGCCC	1 cut(s)	1079
AspS9I	GGNCC	4 cut(s)	1075, 1076, 1201, 1207
AsuC2I	CCSGG	2 cut(s)	1149, 1205
AsuHPI	GGTGA	8 cut(s)	102, 239, 376, 513, 650, 1045, 1298, 1353
BaeGI	GKGCMC	1 cut(s)	1079
BanII	GRGCYC	1 cut(s)	1079
BbsI	GAAGAC	3 cut(s)	892, 1106, 1342
BciT130I	CCWGG	5 cut(s)	896, 984, 1050, 1080, 1255
BcnI	CCSGG	2 cut(s)	1149, 1205
BcoDI	GTCTC	2 cut(s)	798, 937
Bme1390I	CCNGG	7 cut(s)	896, 984, 1050, 1080, 1149, 1205, 1255
BmgT120I	GGNCC	4 cut(s)	1075, 1076, 1201, 1207
BmiI	GGNNCC	3 cut(s)	1077, 1203, 1264
BmrFI	CCNGG	7 cut(s)	896, 984, 1050, 1080, 1149, 1205, 1255
BmrI	ACTGGG	1 cut(s)	1011
BmuI	ACTGGG	1 cut(s)	1011
BoxI	GACNNNNGTC	1 cut(s)	1346
BpiI	GAAGAC	3 cut(s)	892, 1106, 1342
BplI	GAGNNNNNCTC	2 cut(s)	1328, 1360
BpmI	CTGGAG	2 cut(s)	1071, 1101
Bpu10I	CCTNAGC	1 cut(s)	1335
BpuEI	CTTGAG	1 cut(s)	858
BpuMI	CCSGG	2 cut(s)	1149, 1205
Bsa29I	ATCGAT	6 cut(s)	49, 186, 323, 460, 597, 734
BsaJI	CCNNGG	7 cut(s)	894, 1039, 1078, 1203, 1254, 1324, 1368
BsaWI	WCCGGW	1 cut(s)	1308
BsaXI	ACNNNNNCTCC	6 cut(s)	871, 901, 979, 1009, 1298, 1328
Bse1I	ACTGG	2 cut(s)	961, 1006
Bse3DI	GCAATG	1 cut(s)	1112
BseBI	CCWGG	5 cut(s)	896, 984, 1050, 1080, 1255
BseCI	ATCGAT	6 cut(s)	49, 186, 323, 460, 597, 734
BseDI	CCNNGG	7 cut(s)	894, 1039, 1078, 1203, 1254, 1324, 1368
BseGI	GGATG	5 cut(s)	113, 250, 387, 524, 661
BseMI	GCAATG	1 cut(s)	1112
BseMII	CTCAG	2 cut(s)	1252, 1326
BseNI	ACTGG	2 cut(s)	961, 1006
BseSI	GKGCMC	1 cut(s)	1079
BseYI	CCCAGC	1 cut(s)	769
Bsh1236I	CGCG	1 cut(s)	930
Bsh1285I	CGRYCG	5 cut(s)	93, 230, 367, 504, 641
BshFI	GGCC	4 cut(s)	860, 1077, 1202, 1208
BshVI	ATCGAT	6 cut(s)	49, 186, 323, 460, 597, 734
BsiEI	CGRYCG	5 cut(s)	93, 230, 367, 504, 641
BsiSI	CCGG	3 cut(s)	1149, 1205, 1309
BslFI	GGGAC	2 cut(s)	1271, 1298
BsmAI	GTCTC	2 cut(s)	798, 937
BsmBI	CGTCTC	2 cut(s)	798, 937
BsmFI	GGGAC	2 cut(s)	1271, 1298
BsnI	GGCC	4 cut(s)	860, 1077, 1202, 1208
Bsp120I	GGGCCC	1 cut(s)	1075
Bsp1286I	GDGCHC	1 cut(s)	1079
BspANI	GGCC	4 cut(s)	860, 1077, 1202, 1208
BspCNI	CTCAG	2 cut(s)	1251, 1327
BspDI	ATCGAT	6 cut(s)	49, 186, 323, 460, 597, 734
BspFNI	CGCG	1 cut(s)	930
BspLI	GGNNCC	3 cut(s)	1077, 1203, 1264
BspPI	GGATC	9 cut(s)	54, 191, 328, 465, 602, 739, 1030, 1133, 1319
BsrBI	CCGCTC	1 cut(s)	1237
BsrDI	GCAATG	1 cut(s)	1112
BsrI	ACTGG	2 cut(s)	961, 1006
BssECI	CCNNGG	7 cut(s)	894, 1039, 1078, 1203, 1254, 1324, 1368
BssT1I	CCWWGG	2 cut(s)	1039, 1368
Bst2UI	CCWGG	5 cut(s)	896, 984, 1050, 1080, 1255
Bst4CI	ACNGT	1 cut(s)	1093
BstC8I	GCNNGC	2 cut(s)	1200, 1331
BstDEI	CTNAG	5 cut(s)	1023, 1238, 1249, 1335, 1392
BstF5I	GGATG	5 cut(s)	113, 250, 387, 524, 661
BstFNI	CGCG	1 cut(s)	930
BstMAI	GTCTC	2 cut(s)	798, 937
BstMCI	CGRYCG	5 cut(s)	93, 230, 367, 504, 641
BstNI	CCWGG	5 cut(s)	896, 984, 1050, 1080, 1255
BstPAI	GACNNNNGTC	1 cut(s)	1346
BstSCI	CCNGG	7 cut(s)	894, 982, 1048, 1078, 1147, 1203, 1253
BstSLI	GKGCMC	1 cut(s)	1079
BstUI	CGCG	1 cut(s)	930
BstV2I	GAAGAC	3 cut(s)	892, 1106, 1342
BstX2I	RGATCY	2 cut(s)	1125, 1311
BstYI	RGATCY	2 cut(s)	1125, 1311
Bsu15I	ATCGAT	6 cut(s)	49, 186, 323, 460, 597, 734
BsuRI	GGCC	4 cut(s)	860, 1077, 1202, 1208
BsuTUI	ATCGAT	6 cut(s)	49, 186, 323, 460, 597, 734
BtgZI	GCGATG	7 cut(s)	111, 248, 385, 522, 659, 911, 1362
BtsCI	GGATG	5 cut(s)	113, 250, 387, 524, 661
BtsIMutI	CAGTG	1 cut(s)	1218
Cac8I	GCNNGC	2 cut(s)	1200, 1331
Cfr13I	GGNCC	4 cut(s)	1075, 1076, 1201, 1207
ClaI	ATCGAT	6 cut(s)	49, 186, 323, 460, 597, 734
CseI	GACGC	1 cut(s)	919
Csp6I	GTAC	2 cut(s)	831, 1027
CviAII	CATG	2 cut(s)	1030, 1162
CviQI	GTAC	2 cut(s)	831, 1027
DdeI	CTNAG	5 cut(s)	1023, 1238, 1249, 1335, 1392
EciI	GGCGGA	3 cut(s)	899, 1221, 1310
Eco130I	CCWWGG	2 cut(s)	1039, 1368
Eco24I	GRGCYC	1 cut(s)	1079
Eco57I	CTGAAG	1 cut(s)	966
EcoO109I	RGGNCCY	3 cut(s)	1075, 1076, 1201
EcoRII	CCWGG	5 cut(s)	894, 982, 1048, 1078, 1253
EcoT14I	CCWWGG	2 cut(s)	1039, 1368
EcoT38I	GRGCYC	1 cut(s)	1079
ErhI	CCWWGG	2 cut(s)	1039, 1368
Esp3I	CGTCTC	2 cut(s)	798, 937
FaeI	CATG	2 cut(s)	1033, 1165
FaiI	YATR	3 cut(s)	1031, 1131, 1163
FaqI	GGGAC	2 cut(s)	1271, 1298
FatI	CATG	2 cut(s)	1029, 1161
FokI	GGATG	5 cut(s)	100, 237, 374, 511, 648
FriOI	GRGCYC	1 cut(s)	1079
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	2 cut(s)	1071, 1101
HaeIII	GGCC	4 cut(s)	860, 1077, 1202, 1208
HapII	CCGG	3 cut(s)	1149, 1205, 1309
HgaI	GACGC	1 cut(s)	919
Hin1II	CATG	2 cut(s)	1033, 1165
HinfI	GANTC	9 cut(s)	51, 188, 325, 462, 599, 736, 1144, 1226, 1286
HpaII	CCGG	3 cut(s)	1149, 1205, 1309
HphI	GGTGA	8 cut(s)	102, 239, 376, 513, 650, 1045, 1298, 1353
Hpy188I	TCNGA	1 cut(s)	1241
Hpy99I	CGWCG	5 cut(s)	158, 295, 432, 569, 706
HpyAV	CCTTC	4 cut(s)	871, 877, 1066, 1313
HpyCH4III	ACNGT	1 cut(s)	1093
HpyCH4V	TGCA	2 cut(s)	4, 1158
HpyF3I	CTNAG	5 cut(s)	1023, 1238, 1249, 1335, 1392
Hsp92II	CATG	2 cut(s)	1033, 1165
LmnI	GCTCC	9 cut(s)	138, 275, 412, 549, 686, 892, 1000, 1052, 1262
MaeIII	GTNAC	2 cut(s)	952, 1087
MbiI	CCGCTC	1 cut(s)	1237
MflI	RGATCY	2 cut(s)	1125, 1311
MhlI	GDGCHC	1 cut(s)	1079
MlyI	GAGTC	2 cut(s)	1138, 1280
MmeI	TCCRAC	1 cut(s)	1022
MseI	TTAA	1 cut(s)	975
MslI	CAYNNNNRTG	1 cut(s)	1166
MspI	CCGG	3 cut(s)	1149, 1205, 1309
MspR9I	CCNGG	7 cut(s)	896, 984, 1050, 1080, 1149, 1205, 1255
MvaI	CCWGG	5 cut(s)	896, 984, 1050, 1080, 1255
MvnI	CGCG	1 cut(s)	930
NciI	CCSGG	2 cut(s)	1149, 1205
NlaIII	CATG	2 cut(s)	1033, 1165
NlaIV	GGNNCC	3 cut(s)	1077, 1203, 1264
NmeAIII	GCCGAG	1 cut(s)	1305
PcsI	WCGNNNNNNNCGW	6 cut(s)	55, 192, 329, 466, 603, 740
PfeI	GAWTC	7 cut(s)	51, 188, 325, 462, 599, 736, 1226
PfoI	TCCNGGA	1 cut(s)	1147
PleI	GAGTC	2 cut(s)	1138, 1280
PpsI	GAGTC	2 cut(s)	1138, 1280
PshAI	GACNNNNGTC	1 cut(s)	1346
Psp6I	CCWGG	5 cut(s)	894, 982, 1048, 1078, 1253
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	5 cut(s)	894, 982, 1048, 1078, 1253
PspN4I	GGNNCC	3 cut(s)	1077, 1203, 1264
PspOMI	GGGCCC	1 cut(s)	1075
PspPI	GGNCC	4 cut(s)	1075, 1076, 1201, 1207
PsuI	RGATCY	2 cut(s)	1125, 1311
RsaI	GTAC	2 cut(s)	832, 1028
RsaNI	GTAC	2 cut(s)	831, 1027
RseI	CAYNNNNRTG	1 cut(s)	1166
SaqAI	TTAA	1 cut(s)	975
Sau96I	GGNCC	4 cut(s)	1075, 1076, 1201, 1207
SchI	GAGTC	2 cut(s)	1138, 1280
ScrFI	CCNGG	7 cut(s)	896, 984, 1050, 1080, 1149, 1205, 1255
SduI	GDGCHC	1 cut(s)	1079
SmiMI	CAYNNNNRTG	1 cut(s)	1166
SmlI	CTYRAG	1 cut(s)	873
SmoI	CTYRAG	1 cut(s)	873
StyD4I	CCNGG	7 cut(s)	894, 982, 1048, 1078, 1147, 1203, 1253
StyI	CCWWGG	2 cut(s)	1039, 1368
TaaI	ACNGT	1 cut(s)	1093
TatI	WGTACW	1 cut(s)	1026
TauI	GCSGC	2 cut(s)	1237, 1358
TfiI	GAWTC	7 cut(s)	51, 188, 325, 462, 599, 736, 1226
Tru1I	TTAA	1 cut(s)	975
Tru9I	TTAA	1 cut(s)	975
TscAI	CASTG	1 cut(s)	1225
TspDTI	ATGAA	8 cut(s)	43, 180, 317, 454, 591, 728, 993, 1365
TspGWI	ACGGA	2 cut(s)	1275, 1336
TspRI	CASTG	1 cut(s)	1225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.