Rw6G007270

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007592
Physical Location & Seq
Forward (+)
11959410 .. 11962665
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007270.1

Sequence Viewer

Length: 288 bp
ATGGAAACAAGAAACTTGAAGCCTGAAGAAGTTACTGGCATTGTGAATGACTTTAATGAACCTGGAACACTTGCTCCAACTGGGTTGTATCTTGGAGGCACTAAGTACATGGTGATCCAAGGAGAGCCTGGAGCTGTCATTAGAGGGAAGAAGGGCCCTGGAGGTGTTACTGTGAAGAAGACTACTCTGGCATTGCTCATTGGGATCTATGATGAGCCAATGACTCCCGGACAATGCAACATGATTGTGGAGAGGCTTGGCGATTATCTGGTTGAGCAGGGTCTCTAG

Protein Analysis

95

Amino Acids

10.16

Weight (kDa)

5.02

Isoelectric Point (pI)

18.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 5 - 95 1.6e-28 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 109, 212
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 107
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 3 cut(s) 61, 127, 157
AloI GAACNNNNNNTCC 2 cut(s) 58, 90
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AlwI GGATC 2 cut(s) 109, 212
AoxI GGCC 1 cut(s) 154
ApaI GGGCCC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 154, 155
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 185
BciT130I CCWGG 3 cut(s) 63, 129, 159
BcnI CCSGG 1 cut(s) 228
BfaI CTAG 1 cut(s) 286
Bme1390I CCNGG 4 cut(s) 63, 129, 159, 228
BmgT120I GGNCC 2 cut(s) 154, 155
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 4 cut(s) 63, 129, 159, 228
BmrI ACTGGG 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 2 cut(s) 150, 180
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 118, 157
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bse1I ACTGG 2 cut(s) 40, 85
Bse3DI GCAATG 1 cut(s) 191
BseBI CCWGG 3 cut(s) 63, 129, 159
BseDI CCNNGG 2 cut(s) 118, 157
BseMI GCAATG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 40, 85
BseSI GKGCMC 1 cut(s) 158
BshFI GGCC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 228
BsnI GGCC 1 cut(s) 156
Bsp120I GGGCCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 2 cut(s) 114, 204
BspANI GGCC 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 2 cut(s) 109, 212
BsrDI GCAATG 1 cut(s) 191
BsrI ACTGG 2 cut(s) 40, 85
BssECI CCNNGG 2 cut(s) 118, 157
BssMI GATC 2 cut(s) 114, 204
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 3 cut(s) 63, 129, 159
Bst4CI ACNGT 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 102
BstKTI GATC 2 cut(s) 117, 207
BstMBI GATC 2 cut(s) 114, 204
BstNI CCWGG 3 cut(s) 63, 129, 159
BstSCI CCNGG 4 cut(s) 61, 127, 157, 226
BstSLI GKGCMC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BsuRI GGCC 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 154, 155
Csp6I GTAC 1 cut(s) 106
CviAII CATG 2 cut(s) 109, 241
CviJI RGCY 6 cut(s) 22, 127, 134, 156, 217, 256
CviKI_1 RGCY 6 cut(s) 22, 127, 134, 156, 217, 256
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 116, 206
DpnII GATC 2 cut(s) 114, 204
Eco130I CCWWGG 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 45
EcoO109I RGGNCCY 2 cut(s) 154, 155
EcoRII CCWGG 3 cut(s) 61, 127, 157
EcoT14I CCWWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 112, 244
FaiI YATR 3 cut(s) 110, 210, 242
FatI CATG 2 cut(s) 108, 240
FriOI GRGCYC 1 cut(s) 158
FspBI CTAG 1 cut(s) 286
GsuI CTGGAG 2 cut(s) 150, 180
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 228
Hin1II CATG 2 cut(s) 112, 244
HinfI GANTC 1 cut(s) 223
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 2 cut(s) 112, 244
Kzo9I GATC 2 cut(s) 114, 204
LmnI GCTCC 2 cut(s) 79, 131
MaeI CTAG 1 cut(s) 286
MaeIII GTNAC 2 cut(s) 31, 166
MalI GATC 2 cut(s) 116, 206
MboI GATC 2 cut(s) 114, 204
MboII GAAGA 4 cut(s) 38, 160, 187, 190
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 4 cut(s) 89, 137, 155, 246
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 4 cut(s) 63, 129, 159, 228
MvaI CCWGG 3 cut(s) 63, 129, 159
NciI CCSGG 1 cut(s) 228
NdeII GATC 2 cut(s) 114, 204
NlaIII CATG 2 cut(s) 112, 244
NlaIV GGNNCC 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 226
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp6I CCWGG 3 cut(s) 61, 127, 157
PspGI CCWGG 3 cut(s) 61, 127, 157
PspN4I GGNNCC 1 cut(s) 156
PspOMI GGGCCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 154, 155
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 2 cut(s) 114, 204
Sau96I GGNCC 2 cut(s) 154, 155
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 4 cut(s) 63, 129, 159, 228
SduI GDGCHC 1 cut(s) 158
SetI ASST 3 cut(s) 64, 136, 166
SmiMI CAYNNNNRTG 1 cut(s) 245
SspMI CTAG 1 cut(s) 286
StyD4I CCNGG 4 cut(s) 61, 127, 157, 226
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 172
TatI WGTACW 1 cut(s) 105
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XspI CTAG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.