Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007592

Physical Location & Seq

Genomic Coordinates Reverse (-)

22909882 .. 22910710

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCGTGGCAGACTTACGTCGACGATCACTTAATGTGCGATGTTGCAGGCAACCGCCTCACCGCCGCCGCAATTCTCGGCCAAGACGGTAGCGTCTGGGCTCAGAGCAACAATTTTCCTCAGGTGAAGCCTGAGGAAATTCAGGGCATCAAAGACGATTTTACTACACCTGGAACACTTGCCCCAACAGGATTGTTCCTTGGTGGTAACAAGTACATGGTAATCCAAGGAGAGCCTAATGCCGTCATTCGAGGAAAGAAGGGAGCTGGTGGTGTTACCATCAAGAAGACCACCTTAGCTTTGGTATTTGGTATCTATGATGAACCAATGACTCCTGGACAATGCAATATGGTTGTGGAGAATCTCGGTGAGTACCTGATTGAATCGGGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

131

Amino Acids

14.04

Weight (kDa)

4.67

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 87	6.3e-24	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19760 AT4G29350 AT5G56600 AT5G56600
fragaria_vesca	FvH4_1g06461
malus_domestica	MD02G1067900.v1.1 MD15G1199500.v1.1
prunus_persica	Prupe.7G217700_v2.0.a1 Prupe.7G217700_v2.0.a1
pyrus_communis	pycom15g17700
rosa_chinensis	RchiOBHm_Chr2g0092211
rosa_laevigata	RLG00000016286
rosa_multiflora	Rmu_sc0000524.1_g000024 Rmu_sc0005722.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149370
rosa_rugosa	Rorug02G0023700
rosa_samantha	Rh2BG069000 Rh4DG181000 Rh5DG465700
rosa_wichuraiana	Rw2G006270 Rw3G005780 Rw5G025200 Rw5G032250 Rw6G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	4 cut(s)	55, 63, 66, 69
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	2 cut(s)	215, 374
AgsI	TTSAA	1 cut(s)	383
AjnI	CCWGG	2 cut(s)	169, 334
AluBI	AGCT	2 cut(s)	266, 299
AluI	AGCT	2 cut(s)	266, 299
AoxI	GGCC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	138
AsuHPI	GGTGA	3 cut(s)	52, 136, 380
AxyI	CCTNAGG	2 cut(s)	120, 132
BanII	GRGCYC	2 cut(s)	103, 393
BbsI	GAAGAC	1 cut(s)	293
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	171, 336
BisI	GCNGC	2 cut(s)	66, 69
BlsI	GCNGC	2 cut(s)	67, 70
Bme1390I	CCNGG	2 cut(s)	171, 336
BmrFI	CCNGG	2 cut(s)	171, 336
BmsI	GCATC	1 cut(s)	156
BoxI	GACNNNNGTC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	199, 226
Bse21I	CCTNAGG	2 cut(s)	120, 132
BseBI	CCWGG	2 cut(s)	171, 336
BseDI	CCNNGG	2 cut(s)	199, 226
BseMII	CTCAG	3 cut(s)	116, 123, 134
BshFI	GGCC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	103, 393
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	4 cut(s)	55, 63, 66, 69
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	3 cut(s)	115, 124, 133
BssECI	CCNNGG	2 cut(s)	199, 226
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	2 cut(s)	199, 226
Bst2UI	CCWGG	2 cut(s)	171, 336
Bst4CI	ACNGT	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	4 cut(s)	102, 120, 132, 295
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	171, 336
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	169, 334
BstV2I	GAAGAC	1 cut(s)	293
Bsu36I	CCTNAGG	2 cut(s)	120, 132
BsuRI	GGCC	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	49
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	214, 373
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	7 cut(s)	81, 101, 130, 235, 266, 299, 391
CviKI_1	RGCY	7 cut(s)	81, 101, 130, 235, 266, 299, 391
CviQI	GTAC	2 cut(s)	214, 373
DdeI	CTNAG	4 cut(s)	102, 120, 132, 295
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	199, 226
Eco24I	GRGCYC	2 cut(s)	103, 393
Eco81I	CCTNAGG	2 cut(s)	120, 132
EcoRII	CCWGG	2 cut(s)	169, 334
EcoT14I	CCWWGG	2 cut(s)	199, 226
EcoT38I	GRGCYC	2 cut(s)	103, 393
ErhI	CCWWGG	2 cut(s)	199, 226
FaeI	CATG	1 cut(s)	220
FaiI	YATR	3 cut(s)	218, 318, 350
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	66, 69
FriOI	GRGCYC	2 cut(s)	103, 393
Fsp4HI	GCNGC	2 cut(s)	66, 69
GluI	GCNGC	2 cut(s)	66, 69
HaeIII	GGCC	1 cut(s)	81
HgaI	GACGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	331, 361, 383
HphI	GGTGA	3 cut(s)	52, 136, 380
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	105, 395
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	47, 345
HpyF3I	CTNAG	4 cut(s)	102, 120, 132, 295
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	263
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	206, 274
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	103, 393
MluCI	AATT	3 cut(s)	72, 112, 138
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	68, 127, 129, 245
MseI	TTAA	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	171, 336
MvaI	CCWGG	2 cut(s)	171, 336
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	220
NmeAIII	GCCGAG	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	361, 383
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	67, 70
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PshAI	GACNNNNGTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	169, 334
PspGI	CCWGG	2 cut(s)	169, 334
RsaI	GTAC	2 cut(s)	215, 374
RsaNI	GTAC	2 cut(s)	214, 373
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	66, 69
Sau3AI	GATC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	171, 336
SduI	GDGCHC	2 cut(s)	103, 393
SetI	ASST	7 cut(s)	21, 126, 172, 268, 296, 301, 378
SfaNI	GCATC	1 cut(s)	156
SgrDI	CGTCGACG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	72, 112, 138
SsiI	CCGC	4 cut(s)	55, 63, 66, 69
StyD4I	CCNGG	2 cut(s)	169, 334
StyI	CCWWGG	2 cut(s)	199, 226
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	21, 250
TasI	AATT	3 cut(s)	72, 112, 138
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	68, 71
TfiI	GAWTC	2 cut(s)	361, 383
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	336
XapI	RAATTY	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.