Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007780

Physical Location & Seq

Genomic Coordinates Forward (+)

8612926 .. 8616117

Gene Structure 3192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGCTGGTTCAAGGGCGAAAGGAAAATTGTGTAGCGGATAAGCGAGCCAAGAGGCTTACTTTGGGATCCCATGTGGCTTCGCCATCTTCAATGAGCTTCAGAGTTTCAGCTAGTAGTTCTGTTAAACCTGAAAAGGATATTAGGATTGGTCTTCTTGGTGCAAGTGGCTACACTGGTGCTGAGATCGTTAGGCTTCTTGCAAATCATCCGCATTTCCAGGTCACTTTGATGACTGCTGATAGAAAAGCTGGCCAGTCAATGGAAAGCGTTTTCCCACACCTGAGAGCTCAAAAACTACCTACTTTGGTCTCGGTAAAGGATGCAGATTTTTCTACTGTGGATGCTGTATTCTGCTGTTTACCTCACGGAACAACTCAGGAAATCATCAAGGAACTGCCTACTGCATTGAAAATCGTTGATCTTTCAGCGGACTTCCGGTTGCGTAATATTGCAGAATATGAAGAATGGTATGGTCAGCCTCACAAGGCAGTAGAGTTACAGAAAGAAGTTGTGTATGGTCTAACAGAGATACTAAGGGAGGACATAAAAAAGGCACGACTTGTGGCTAACCCAGGCTGTTACCCGACTACGATTCAACTTCCTCTTGTTCCTTTACTAAAGGCAAATCTCATCAAACATGAAAACATCATTATCGATGCAAAATCTGGTGTTAGTGGAGCAGGACGTGGTGCTAAGGAGGCAAATCTTTACTCTGAGATAGCTGAAGGCATTTCTTCTTATGGTGTCACCCGTCATCGCCATGTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATGATCCGTGGAATGCAATCGACTATATATGTGGAAATGGCTCCCGGGGTTAGAACCGAAGATTTACACCAGCAATTGAAGACGTCTTATGAGGATGAAGAATTTGTCAAAGTGTTGGATGAAGGAGTTGTTCCTCGGACACACAACGTTAGAGGATCCAACTATTGTCATATGAGTGTCTTTCCTGATCGAATTCCTGGAAGAGCTATCATAATCTCAGTGATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAGAATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTTTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0016020 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

389

Amino Acids

42.82

Weight (kDa)

7.72

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Semialdhyde_dh	PF01118	48 - 185	8.7e-30	Semialdehyde dehydrogenase, NAD binding domain
Semialdhyde_dhC_1	PF22698	193 - 357	3.3e-62	Semialdehyde dehydrogenase, dimerisation domain
Semialdhyde_dhC	PF02774	202 - 360	6e-22	Semialdehyde dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19940 AT2G19940
fragaria_vesca	FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021
malus_domestica	MD00G1050500.v1.1 MD10G1088500.v1.1
prunus_persica	Prupe.8G115600_v2.0.a1
pyrus_communis	pycom10g07140
rosa_chinensis	RchiOBHm_Chr6g0259381
rosa_laevigata	RLG00000014536
rosa_multiflora	Rmu_sc0012054.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246350 Rroxscaffold_7G00206640
rosa_rugosa	Rorug05G0588300 Rorug05G0588400 Rorug05G0588500
rosa_samantha	Rh6AG104000 Rh6BG097300 Rh6CG093300 Rh6DG087100
rosa_wichuraiana	Rw6G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	926
AccB7I	CCANNNNNTGG	1 cut(s)	259
AciI	CCGC	4 cut(s)	35, 209, 428, 1157
AclI	AACGTT	1 cut(s)	987
AclWI	GGATC	5 cut(s)	60, 73, 838, 990, 1003
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	941, 1032
AcuI	CTGAAG	2 cut(s)	82, 744
AcyI	GRCGYC	1 cut(s)	923
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	6 cut(s)	11, 90, 409, 596, 776, 919
AjiI	CACGTC	1 cut(s)	686
AjnI	CCWGG	3 cut(s)	216, 571, 1036
AluBI	AGCT	7 cut(s)	96, 110, 248, 287, 722, 1046, 1085
AluI	AGCT	7 cut(s)	96, 110, 248, 287, 722, 1046, 1085
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	5 cut(s)	60, 73, 838, 990, 1003
Ama87I	CYCGRG	1 cut(s)	884
AoxI	GGCC	1 cut(s)	250
ApoI	RAATTY	2 cut(s)	941, 1032
AsuC2I	CCSGG	2 cut(s)	885, 886
AsuHPI	GGTGA	1 cut(s)	739
AvaI	CYCGRG	1 cut(s)	884
BalI	TGGCCA	1 cut(s)	252
BamHI	GGATCC	2 cut(s)	65, 995
BanII	GRGCYC	2 cut(s)	289, 1146
BbsI	GAAGAC	2 cut(s)	143, 926
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	3 cut(s)	218, 573, 1038
BcnI	CCSGG	2 cut(s)	885, 886
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	1157
BlsI	GCNGC	1 cut(s)	1158
Bme1390I	CCNGG	5 cut(s)	218, 573, 885, 886, 1038
BmeT110I	CYCGRG	1 cut(s)	884
BmgBI	CACGTC	1 cut(s)	686
BmiI	GGNNCC	4 cut(s)	67, 882, 997, 1145
BmrFI	CCNGG	5 cut(s)	218, 573, 885, 886, 1038
BmsI	GCATC	3 cut(s)	310, 331, 646
BpiI	GAAGAC	2 cut(s)	143, 926
Bpu10I	CCTNAGC	1 cut(s)	693
BpuMI	CCSGG	2 cut(s)	885, 886
Bsa29I	ATCGAT	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	923
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	5 cut(s)	571, 847, 884, 885, 974
BsaWI	WCCGGW	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	178, 253
BseBI	CCWGG	3 cut(s)	218, 573, 1038
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	5 cut(s)	571, 847, 884, 885, 974
BseGI	GGATG	5 cut(s)	205, 325, 346, 940, 964
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	5 cut(s)	171, 272, 389, 705, 1071
BseNI	ACTGG	2 cut(s)	178, 253
BshFI	GGCC	1 cut(s)	252
BshVI	ATCGAT	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	884
BsiSI	CCGG	2 cut(s)	436, 885
BslFI	GGGAC	1 cut(s)	1104
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	1104
BsmI	GAATGC	1 cut(s)	858
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	884
Bsp1286I	GDGCHC	2 cut(s)	289, 1146
Bsp143I	GATC	6 cut(s)	65, 183, 418, 843, 995, 1027
BspACI	CCGC	4 cut(s)	35, 209, 428, 1157
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	5 cut(s)	172, 273, 388, 706, 1070
BspDI	ATCGAT	1 cut(s)	654
BspLI	GGNNCC	4 cut(s)	67, 882, 997, 1145
BspPI	GGATC	5 cut(s)	60, 73, 838, 990, 1003
BspQI	GCTCTTC	1 cut(s)	1036
BspTNI	GGTCTC	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	178, 253
BssECI	CCNNGG	5 cut(s)	571, 847, 884, 885, 974
BssMI	GATC	6 cut(s)	65, 183, 418, 843, 995, 1027
BssNI	GRCGYC	1 cut(s)	923
Bst2UI	CCWGG	3 cut(s)	218, 573, 1038
Bst4CI	ACNGT	3 cut(s)	337, 801, 814
Bst6I	CTCTTC	1 cut(s)	1036
BstACI	GRCGYC	1 cut(s)	923
BstC8I	GCNNGC	2 cut(s)	45, 250
BstDEI	CTNAG	7 cut(s)	180, 281, 375, 533, 693, 714, 1057
BstDSI	CCRYGG	1 cut(s)	847
BstF5I	GGATG	5 cut(s)	205, 325, 346, 940, 964
BstKTI	GATC	6 cut(s)	68, 186, 421, 846, 998, 1030
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	6 cut(s)	65, 183, 418, 843, 995, 1027
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNI	CCWGG	3 cut(s)	218, 573, 1038
BstSCI	CCNGG	5 cut(s)	216, 571, 883, 884, 1036
BstV2I	GAAGAC	2 cut(s)	143, 926
BstX2I	RGATCY	2 cut(s)	65, 995
BstYI	RGATCY	2 cut(s)	65, 995
Bsu15I	ATCGAT	1 cut(s)	654
BsuRI	GGCC	1 cut(s)	252
BsuTUI	ATCGAT	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	847
BtgZI	GCGATG	1 cut(s)	740
BtrI	CACGTC	1 cut(s)	686
BtsCI	GGATG	5 cut(s)	205, 325, 346, 940, 964
BtsIMutI	CAGTG	2 cut(s)	171, 1065
Cac8I	GCNNGC	2 cut(s)	45, 250
Cfr9I	CCCGGG	1 cut(s)	884
ClaI	ATCGAT	1 cut(s)	654
CviAII	CATG	4 cut(s)	71, 638, 761, 835
DdeI	CTNAG	7 cut(s)	180, 281, 375, 533, 693, 714, 1057
DpnI	GATC	6 cut(s)	67, 185, 420, 845, 997, 1029
DpnII	GATC	6 cut(s)	65, 183, 418, 843, 995, 1027
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	1036
EarI	CTCTTC	1 cut(s)	1036
Ecl136II	GAGCTC	1 cut(s)	287
Eco24I	GRGCYC	2 cut(s)	289, 1146
Eco31I	GGTCTC	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	1127
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	82, 744
Eco88I	CYCGRG	1 cut(s)	884
EcoICRI	GAGCTC	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	1032
EcoRII	CCWGG	3 cut(s)	216, 571, 1036
EcoRV	GATATC	1 cut(s)	1127
EcoT38I	GRGCYC	2 cut(s)	289, 1146
FaeI	CATG	4 cut(s)	74, 641, 764, 838
FaqI	GGGAC	1 cut(s)	1104
FatI	CATG	4 cut(s)	70, 637, 760, 834
FauNDI	CATATG	1 cut(s)	1011
Fnu4HI	GCNGC	1 cut(s)	1157
FokI	GGATG	5 cut(s)	192, 332, 353, 947, 971
FriOI	GRGCYC	2 cut(s)	289, 1146
Fsp4HI	GCNGC	1 cut(s)	1157
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	1157
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	2 cut(s)	436, 885
Hin1I	GRCGYC	1 cut(s)	923
Hin1II	CATG	4 cut(s)	74, 641, 764, 838
HinfI	GANTC	2 cut(s)	592, 1105
HpaII	CCGG	2 cut(s)	436, 885
HphI	GGTGA	1 cut(s)	739
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	4 cut(s)	101, 715, 790, 978
Hpy188III	TCNNGA	5 cut(s)	377, 767, 1025, 1089, 1130
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	2 cut(s)	719, 956
HpyCH4III	ACNGT	3 cut(s)	337, 801, 814
HpyCH4IV	ACGT	3 cut(s)	685, 923, 987
HpyCH4V	TGCA	9 cut(s)	161, 200, 323, 404, 452, 659, 797, 856, 1102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	7 cut(s)	180, 281, 375, 533, 693, 714, 1057
HpySE526I	ACGT	3 cut(s)	685, 923, 987
Hsp92I	GRCGYC	1 cut(s)	923
Hsp92II	CATG	4 cut(s)	74, 641, 764, 838
Kzo9I	GATC	6 cut(s)	65, 183, 418, 843, 995, 1027
LguI	GCTCTTC	1 cut(s)	1036
LmnI	GCTCC	4 cut(s)	677, 886, 1082, 1149
LweI	GCATC	3 cut(s)	310, 331, 646
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	3 cut(s)	685, 923, 987
MaeIII	GTNAC	5 cut(s)	220, 495, 578, 745, 808
MalI	GATC	6 cut(s)	67, 185, 420, 845, 997, 1029
MboI	GATC	6 cut(s)	65, 183, 418, 843, 995, 1027
MboII	GAAGA	8 cut(s)	78, 143, 473, 726, 911, 931, 950, 1053
MfeI	CAATTG	1 cut(s)	914
MflI	RGATCY	2 cut(s)	65, 995
MhlI	GDGCHC	2 cut(s)	289, 1146
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	5 cut(s)	25, 771, 914, 941, 1032
MluNI	TGGCCA	1 cut(s)	252
MmeI	TCCRAC	2 cut(s)	936, 1023
MnlI	CCTC	9 cut(s)	45, 372, 489, 532, 612, 691, 925, 984, 986
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	3 cut(s)	123, 1110, 1168
MslI	CAYNNNNRTG	4 cut(s)	227, 759, 839, 1014
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	2 cut(s)	436, 885
MspR9I	CCNGG	5 cut(s)	218, 573, 885, 886, 1038
MunI	CAATTG	1 cut(s)	914
Mva1269I	GAATGC	1 cut(s)	858
MvaI	CCWGG	3 cut(s)	218, 573, 1038
MwoI	GCNNNNNNNGC	1 cut(s)	698
NciI	CCSGG	2 cut(s)	885, 886
NdeI	CATATG	1 cut(s)	1011
NdeII	GATC	6 cut(s)	65, 183, 418, 843, 995, 1027
NlaIII	CATG	4 cut(s)	74, 641, 764, 838
NlaIV	GGNNCC	4 cut(s)	67, 882, 997, 1145
NmuCI	GTSAC	2 cut(s)	220, 745
PciSI	GCTCTTC	1 cut(s)	1036
PcsI	WCGNNNNNNNCGW	1 cut(s)	1094
PctI	GAATGC	1 cut(s)	858
PfeI	GAWTC	2 cut(s)	592, 1105
PflMI	CCANNNNNTGG	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	1036
PkrI	GCNGC	1 cut(s)	1158
Psp124BI	GAGCTC	1 cut(s)	289
Psp1406I	AACGTT	1 cut(s)	987
Psp6I	CCWGG	3 cut(s)	216, 571, 1036
PspGI	CCWGG	3 cut(s)	216, 571, 1036
PspN4I	GGNNCC	4 cut(s)	67, 882, 997, 1145
PsuI	RGATCY	2 cut(s)	65, 995
RseI	CAYNNNNRTG	4 cut(s)	227, 759, 839, 1014
SacI	GAGCTC	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	1036
SaqAI	TTAA	3 cut(s)	123, 1110, 1168
SatI	GCNGC	1 cut(s)	1157
Sau3AI	GATC	6 cut(s)	65, 183, 418, 843, 995, 1027
ScrFI	CCNGG	5 cut(s)	218, 573, 885, 886, 1038
SduI	GDGCHC	2 cut(s)	289, 1146
SfaNI	GCATC	3 cut(s)	310, 331, 646
SmaI	CCCGGG	1 cut(s)	886
SmiMI	CAYNNNNRTG	4 cut(s)	227, 759, 839, 1014
Sse9I	AATT	5 cut(s)	25, 771, 914, 941, 1032
SsiI	CCGC	4 cut(s)	35, 209, 428, 1157
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	5 cut(s)	216, 571, 883, 884, 1036
TaaI	ACNGT	3 cut(s)	337, 801, 814
TaiI	ACGT	3 cut(s)	688, 926, 990
TaqI	TCGA	3 cut(s)	654, 860, 1030
TasI	AATT	5 cut(s)	25, 771, 914, 941, 1032
TauI	GCSGC	1 cut(s)	1159
TfiI	GAWTC	2 cut(s)	592, 1105
Tru1I	TTAA	3 cut(s)	123, 1110, 1168
Tru9I	TTAA	3 cut(s)	123, 1110, 1168
TscAI	CASTG	2 cut(s)	178, 1065
TseFI	GTSAC	2 cut(s)	220, 745
Tsp45I	GTSAC	2 cut(s)	220, 745
TspDTI	ATGAA	4 cut(s)	474, 654, 951, 975
TspGWI	ACGGA	2 cut(s)	381, 836
TspMI	CCCGGG	1 cut(s)	884
TspRI	CASTG	2 cut(s)	178, 1065
Van91I	CCANNNNNTGG	1 cut(s)	259
XapI	RAATTY	2 cut(s)	941, 1032
XmaI	CCCGGG	1 cut(s)	884
XspI	CTAG	1 cut(s)	111
ZraI	GACGTC	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.