Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007780

Physical Location & Seq

Genomic Coordinates Reverse (-)

78688361 .. 78690175

Gene Structure 1815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0588500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

ATGGTGGATTTTTCCAGCAATCGCTTACATGGTGCCATTCCATCTTCGTTTTTCCAACAAGCTTGGAATTTGACTAGTTTCAATGTCAGTAACAACACCTTTTCAGGTCCTATCCCATCCTCTATTTGTCATCCTTCTTCTTCCTCGTTACGACACCTTGATTTTTCCTTCAATAATTTCAATGGTAGTATATCTTCTGGACTGGGGAAGTGTTCCGAACTGCAGGTCTTCCGTGCTGGTTACAATTACCTGTCAGGATCGCTTCCAGAAGATATCTTTAATTCTACCACACTTGAAGAGATTTCACTACCTCTAAATTCATTGTATGGAGCAGTGAGTGATAGAATTTCCAACCTCACCAACCTTACCACTCTTGACCTCTCCTATAACCAATTGAGTGGTGATATCCCTCTCCATCTTGGGAAGCTCTCCAAGTTGAAACACATAATCCTTGATTTCAACTATCTGGAAGGTTCATTTCCCCTATCTCTGACGAATTGCACAAACCTCGTTGAACTACGTATGGGAGCCAACAACTTGGGAGGTGATATCTCCATGCTCAATTTTTCAAAATTTAGCCAACTTAATAAACTCGACTTGCGGAAAAATAACTTCTTTGGTATCTTGCCAAGAAGCCTCTACTCGTGCAAATTTTTGAAAGCAATTCGAGTGAACTATAATAATCTAGAGGTTCAAATACAGTCTGATATTGTTTCATTGAAATCCCTGTCCTTCCTCTCACTCGGAGGGAACAAACGTTTGACTAATATCAAAGAGGCATTGAAGATACTGATGGGATGCAAACGCCTTGTAGTCCTATCATTAGCATCTAGTTTTGTAGGCGAGGAACTTCCGGCTGATCTTGGGACGGTTGATTTTGATGGATTCCAAAATCTTCGACTTCTGGATTTGAGTTCCTGTAACCTTACTGGTCAAATCCCTTTGTGGATATCAAAACTCAAAATGCTGGAGATCTTGGACCTGAATCAGAATAGAATCACAGGCTCAATTCCAAGTTGGATGGGGAATCTTCCTAGGCTGTATACTATATCCATGGAATCCAACCTACTTTCAGGACAACTTCCAAAGCAATTCTGCAGGCTACCGATGTTGGTGTCTGAACAAGCTGCAGCTCAACTACATCGTACTGATATTGAATTGCCTATATACATACCCAGTGTTCATGCAAAACCGTTACAGTACAATTATTTATTTTACGCTCCATCAATATACCTACGTGACAATTGCCTTAGTGGGAATATACCTATTGAGATTGGCCAATTGCAGCTTCTCCAACTGCTGGATCTTAGTGCTAACAACTTCTCCGGCAACATTCCAGACCAGATATCTAACCTCAAGTACATGGAGATACTGGATCTCTCCATGAACCATTTGTCTGGAAAAATCCCATCATCATTCACAGGTCTTAATTTCTTATCAAGTTTCAATGTCTCGTACAATAATCTCCGAGGACCAATACCATCAAGCACTCAGCTCCAAAGTTTCGATGCTTCTGCATTTGAGGGGAATCTGAAACTTTGTGGTGCGCCACTTCCAAATAAGTGTCAGACAACAATGGGTGCTGATGCACCTGATATGAGCACCCAAGATGCAGACACGAAGGAGCAACAAATTCCATGGTTTTATGTTTCTGTTGCACTTGGGTTCATTATAGGATTTTGGGGAGTCTGTGGTCCTTTAGTGCTTATGACGAAGTGGAGGTATGCATATTACCATTTCCTAGACAATGTACAAGACAGGTTCCATGTGATGATAGCAAAGCGTATGGCAAGCATGAAGAGAAGGTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0016020 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

604

Amino Acids

67.37

Weight (kDa)

8.18

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	298 - 357	1.9e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19940 AT2G19940
fragaria_vesca	FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021
malus_domestica	MD00G1050500.v1.1 MD10G1088500.v1.1
prunus_persica	Prupe.8G115600_v2.0.a1
pyrus_communis	pycom10g07140
rosa_chinensis	RchiOBHm_Chr6g0259381
rosa_laevigata	RLG00000014536
rosa_multiflora	Rmu_sc0012054.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246350 Rroxscaffold_7G00206640
rosa_rugosa	Rorug05G0588300 Rorug05G0588400 Rorug05G0588500
rosa_samantha	Rh6AG104000 Rh6BG097300 Rh6CG093300 Rh6DG087100
rosa_wichuraiana	Rw6G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	1300
AccI	GTMKAC	1 cut(s)	1043
AciI	CCGC	1 cut(s)	601
AclI	AACGTT	1 cut(s)	757
AclWI	GGATC	3 cut(s)	265, 1311, 1383
AcoI	YGGCCR	1 cut(s)	1276
AcsI	RAATTY	6 cut(s)	67, 316, 345, 572, 650, 1632
AfaI	GTAC	5 cut(s)	1147, 1202, 1361, 1457, 1752
AfiI	CCNNNNNNNGG	1 cut(s)	1300
AhlI	ACTAGT	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	1272, 1304
AluBI	AGCT	6 cut(s)	62, 427, 1127, 1133, 1288, 1495
AluI	AGCT	6 cut(s)	62, 427, 1127, 1133, 1288, 1495
Alw21I	GWGCWC	1 cut(s)	1604
Alw26I	GTCTC	1 cut(s)	1456
AlwI	GGATC	3 cut(s)	265, 1311, 1383
AoxI	GGCC	1 cut(s)	1276
ApeKI	GCWGC	3 cut(s)	1127, 1130, 1285
ApoI	RAATTY	6 cut(s)	67, 316, 345, 572, 650, 1632
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
AspA2I	CCTAGG	1 cut(s)	1034
AspLEI	GCGC	1 cut(s)	1549
AspS9I	GGNCC	4 cut(s)	107, 979, 1472, 1694
AsuHPI	GGTGA	3 cut(s)	349, 413, 557
AvaII	GGWCC	4 cut(s)	107, 979, 1472, 1694
AvrII	CCTAGG	1 cut(s)	1034
BalI	TGGCCA	1 cut(s)	1278
BanI	GGYRCC	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	178, 210
BauI	CACGAG	1 cut(s)	643
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	1604
BbvI	GCAGC	3 cut(s)	1114, 1142, 1297
BccI	CCATC	9 cut(s)	49, 124, 423, 787, 875, 1015, 1231, 1417, 1489
BcgI	CGANNNNNNTGC	4 cut(s)	490, 524, 1496, 1530
BcoDI	GTCTC	1 cut(s)	1456
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	5 cut(s)	75, 686, 831, 1035, 1742
BfmI	CTRYAG	3 cut(s)	221, 1096, 1128
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	972
BisI	GCNGC	3 cut(s)	1128, 1131, 1286
BlnI	CCTAGG	1 cut(s)	1034
BlsI	GCNGC	3 cut(s)	1129, 1132, 1287
Bme18I	GGWCC	4 cut(s)	107, 979, 1472, 1694
BmgT120I	GGNCC	4 cut(s)	107, 979, 1472, 1694
BmiI	GGNNCC	3 cut(s)	34, 529, 1763
BmrI	ACTGGG	2 cut(s)	212, 1170
BmsI	GCATC	5 cut(s)	788, 836, 1498, 1576, 1600
BmuI	ACTGGG	2 cut(s)	212, 1170
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	989
BpuEI	CTTGAG	1 cut(s)	1340
BsaAI	YACGTR	2 cut(s)	521, 1238
BsaJI	CCNNGG	4 cut(s)	1034, 1053, 1468, 1637
BsaXI	ACNNNNNCTCC	2 cut(s)	1307, 1337
Bsc4I	CCNNNNNNNGG	1 cut(s)	1300
Bse1I	ACTGG	4 cut(s)	207, 934, 1176, 1377
BseDI	CCNNGG	4 cut(s)	1034, 1053, 1468, 1637
BseGI	GGATG	4 cut(s)	116, 130, 803, 1026
BseLI	CCNNNNNNNGG	1 cut(s)	1300
BseMII	CTCAG	1 cut(s)	1505
BseNI	ACTGG	4 cut(s)	207, 934, 1176, 1377
BseXI	GCAGC	3 cut(s)	1114, 1142, 1297
BshFI	GGCC	1 cut(s)	1278
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	1604
BsiSI	CCGG	2 cut(s)	854, 1326
BslFI	GGGAC	1 cut(s)	880
BslI	CCNNNNNNNGG	1 cut(s)	1300
BsmAI	GTCTC	1 cut(s)	1456
BsmFI	GGGAC	1 cut(s)	880
BsnI	GGCC	1 cut(s)	1278
Bsp1286I	GDGCHC	1 cut(s)	1604
Bsp1407I	TGTACA	1 cut(s)	1750
Bsp143I	GATC	5 cut(s)	257, 859, 972, 1303, 1375
Bsp19I	CCATGG	2 cut(s)	1053, 1637
BspACI	CCGC	1 cut(s)	601
BspANI	GGCC	1 cut(s)	1278
BspCNI	CTCAG	1 cut(s)	1504
BspLI	GGNNCC	3 cut(s)	34, 529, 1763
BspMAI	CTGCAG	3 cut(s)	225, 1100, 1132
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	3 cut(s)	265, 1311, 1383
BspT107I	GGYRCC	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	1750
BsrI	ACTGG	4 cut(s)	207, 934, 1176, 1377
BssECI	CCNNGG	4 cut(s)	1034, 1053, 1468, 1637
BssMI	GATC	5 cut(s)	257, 859, 972, 1303, 1375
BssNAI	GTATAC	1 cut(s)	1044
BssSI	CACGAG	1 cut(s)	643
BssT1I	CCWWGG	3 cut(s)	1034, 1053, 1637
Bst1107I	GTATAC	1 cut(s)	1044
Bst2BI	CACGAG	1 cut(s)	643
Bst4CI	ACNGT	4 cut(s)	702, 871, 1194, 1200
Bst6I	CTCTTC	2 cut(s)	291, 1793
BstAUI	TGTACA	1 cut(s)	1750
BstBAI	YACGTR	2 cut(s)	521, 1238
BstC8I	GCNNGC	2 cut(s)	1100, 1792
BstDEI	CTNAG	3 cut(s)	1250, 1307, 1491
BstDSI	CCRYGG	2 cut(s)	1053, 1637
BstF5I	GGATG	4 cut(s)	116, 130, 803, 1026
BstHHI	GCGC	1 cut(s)	1549
BstKTI	GATC	5 cut(s)	260, 862, 975, 1306, 1378
BstMAI	GTCTC	1 cut(s)	1456
BstMBI	GATC	5 cut(s)	257, 859, 972, 1303, 1375
BstSFI	CTRYAG	3 cut(s)	221, 1096, 1128
BstSNI	TACGTA	1 cut(s)	521
BstV1I	GCAGC	3 cut(s)	1114, 1142, 1297
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	3 cut(s)	972, 1303, 1375
BstXI	CCANNNNNNTGG	3 cut(s)	398, 538, 1397
BstYI	RGATCY	3 cut(s)	972, 1303, 1375
BstZ17I	GTATAC	1 cut(s)	1044
BsuRI	GGCC	1 cut(s)	1278
BtgI	CCRYGG	2 cut(s)	1053, 1637
BtsCI	GGATG	4 cut(s)	116, 130, 803, 1026
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	339, 1183
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	1100, 1792
CfoI	GCGC	1 cut(s)	1549
Cfr13I	GGNCC	4 cut(s)	107, 979, 1472, 1694
Csp6I	GTAC	5 cut(s)	1146, 1201, 1360, 1456, 1751
CviAII	CATG	9 cut(s)	29, 556, 1054, 1184, 1363, 1384, 1638, 1766, 1795
CviQI	GTAC	5 cut(s)	1146, 1201, 1360, 1456, 1751
DdeI	CTNAG	3 cut(s)	1250, 1307, 1491
DpnI	GATC	5 cut(s)	259, 861, 974, 1305, 1377
DpnII	GATC	5 cut(s)	257, 859, 972, 1303, 1375
EaeI	YGGCCR	1 cut(s)	1276
Eam1104I	CTCTTC	2 cut(s)	291, 1793
EarI	CTCTTC	2 cut(s)	291, 1793
Eco105I	TACGTA	1 cut(s)	521
Eco130I	CCWWGG	3 cut(s)	1034, 1053, 1637
Eco32I	GATATC	5 cut(s)	274, 406, 550, 951, 1347
Eco47I	GGWCC	4 cut(s)	107, 979, 1472, 1694
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRV	GATATC	5 cut(s)	274, 406, 550, 951, 1347
EcoT14I	CCWWGG	3 cut(s)	1034, 1053, 1637
EcoT22I	ATGCAT	1 cut(s)	1729
ErhI	CCWWGG	3 cut(s)	1034, 1053, 1637
FaeI	CATG	9 cut(s)	32, 559, 1057, 1187, 1366, 1387, 1641, 1769, 1798
FaqI	GGGAC	1 cut(s)	880
FatI	CATG	9 cut(s)	28, 555, 1053, 1183, 1362, 1383, 1637, 1765, 1794
FblI	GTMKAC	1 cut(s)	1043
Fnu4HI	GCNGC	3 cut(s)	1128, 1131, 1286
FokI	GGATG	4 cut(s)	103, 117, 810, 1033
Fsp4HI	GCNGC	3 cut(s)	1128, 1131, 1286
FspBI	CTAG	5 cut(s)	75, 686, 831, 1035, 1742
GlaI	GCGC	1 cut(s)	1548
GluI	GCNGC	3 cut(s)	1128, 1131, 1286
GsuI	CTGGAG	1 cut(s)	989
HaeIII	GGCC	1 cut(s)	1278
HapII	CCGG	2 cut(s)	854, 1326
HhaI	GCGC	1 cut(s)	1549
Hin1II	CATG	9 cut(s)	32, 559, 1057, 1187, 1366, 1387, 1641, 1769, 1798
Hin6I	GCGC	1 cut(s)	1547
HinP1I	GCGC	1 cut(s)	1547
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	7 cut(s)	885, 985, 996, 1027, 1058, 1528, 1686
HpaII	CCGG	2 cut(s)	854, 1326
HphI	GGTGA	3 cut(s)	349, 413, 557
Hpy166II	GTNNAC	2 cut(s)	673, 1044
Hpy188I	TCNGA	9 cut(s)	217, 492, 706, 746, 990, 1120, 1469, 1533, 1569
Hpy8I	GTNNAC	2 cut(s)	673, 1044
HpyAV	CCTTC	6 cut(s)	144, 178, 464, 742, 1615, 1797
HpyCH4III	ACNGT	4 cut(s)	702, 871, 1194, 1200
HpyCH4IV	ACGT	3 cut(s)	520, 757, 1237
HpyF3I	CTNAG	3 cut(s)	1250, 1307, 1491
HpySE526I	ACGT	3 cut(s)	520, 757, 1237
Hsp92II	CATG	9 cut(s)	32, 559, 1057, 1187, 1366, 1387, 1641, 1769, 1798
HspAI	GCGC	1 cut(s)	1547
Kzo9I	GATC	5 cut(s)	257, 859, 972, 1303, 1375
LmnI	GCTCC	5 cut(s)	329, 527, 1225, 1500, 1624
Lsp1109I	GCAGC	3 cut(s)	1114, 1142, 1297
LweI	GCATC	5 cut(s)	788, 836, 1498, 1576, 1600
MaeI	CTAG	5 cut(s)	75, 686, 831, 1035, 1742
MaeII	ACGT	3 cut(s)	520, 757, 1237
MaeIII	GTNAC	6 cut(s)	89, 147, 239, 920, 1194, 1238
MalI	GATC	5 cut(s)	259, 861, 974, 1305, 1377
MboI	GATC	5 cut(s)	257, 859, 972, 1303, 1375
MfeI	CAATTG	3 cut(s)	392, 1243, 1280
MflI	RGATCY	3 cut(s)	972, 1303, 1375
MhlI	GDGCHC	1 cut(s)	1604
MlsI	TGGCCA	1 cut(s)	1278
MluNI	TGGCCA	1 cut(s)	1278
MlyI	GAGTC	1 cut(s)	1695
MmeI	TCCRAC	5 cut(s)	79, 375, 998, 1086, 1318
Mox20I	TGGCCA	1 cut(s)	1278
Mph1103I	ATGCAT	1 cut(s)	1729
MscI	TGGCCA	1 cut(s)	1278
MseI	TTAA	3 cut(s)	279, 585, 1428
Msp20I	TGGCCA	1 cut(s)	1278
MspI	CCGG	2 cut(s)	854, 1326
MunI	CAATTG	3 cut(s)	392, 1243, 1280
NcoI	CCATGG	2 cut(s)	1053, 1637
NdeII	GATC	5 cut(s)	257, 859, 972, 1303, 1375
NlaIII	CATG	9 cut(s)	32, 559, 1057, 1187, 1366, 1387, 1641, 1769, 1798
NlaIV	GGNNCC	3 cut(s)	34, 529, 1763
NmuCI	GTSAC	1 cut(s)	1238
NsiI	ATGCAT	1 cut(s)	1729
PfeI	GAWTC	6 cut(s)	885, 985, 996, 1027, 1058, 1528
PflMI	CCANNNNNTGG	1 cut(s)	1300
PkrI	GCNGC	3 cut(s)	1129, 1132, 1287
PleI	GAGTC	1 cut(s)	1694
PpsI	GAGTC	1 cut(s)	1694
Ppu21I	YACGTR	2 cut(s)	521, 1238
PpuMI	RGGWCCY	1 cut(s)	107
Psp1406I	AACGTT	1 cut(s)	757
Psp5II	RGGWCCY	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	34, 529, 1763
PspPI	GGNCC	4 cut(s)	107, 979, 1472, 1694
PspPPI	RGGWCCY	1 cut(s)	107
PstI	CTGCAG	3 cut(s)	225, 1100, 1132
PsuI	RGATCY	3 cut(s)	972, 1303, 1375
RsaI	GTAC	5 cut(s)	1147, 1202, 1361, 1457, 1752
RsaNI	GTAC	5 cut(s)	1146, 1201, 1360, 1456, 1751
SaqAI	TTAA	3 cut(s)	279, 585, 1428
SatI	GCNGC	3 cut(s)	1128, 1131, 1286
Sau3AI	GATC	5 cut(s)	257, 859, 972, 1303, 1375
Sau96I	GGNCC	4 cut(s)	107, 979, 1472, 1694
SchI	GAGTC	1 cut(s)	1695
SduI	GDGCHC	1 cut(s)	1604
SfaNI	GCATC	5 cut(s)	788, 836, 1498, 1576, 1600
SfcI	CTRYAG	3 cut(s)	221, 1096, 1128
SinI	GGWCC	4 cut(s)	107, 979, 1472, 1694
SmlI	CTYRAG	1 cut(s)	1355
SmoI	CTYRAG	1 cut(s)	1355
SnaBI	TACGTA	1 cut(s)	521
SpeI	ACTAGT	1 cut(s)	74
SsiI	CCGC	1 cut(s)	601
SspMI	CTAG	5 cut(s)	75, 686, 831, 1035, 1742
StyI	CCWWGG	3 cut(s)	1034, 1053, 1637
TaaI	ACNGT	4 cut(s)	702, 871, 1194, 1200
TaiI	ACGT	3 cut(s)	523, 760, 1240
TaqI	TCGA	4 cut(s)	594, 667, 898, 1506
TatI	WGTACW	3 cut(s)	1200, 1359, 1750
TfiI	GAWTC	6 cut(s)	885, 985, 996, 1027, 1058, 1528
Tru1I	TTAA	3 cut(s)	279, 585, 1428
Tru9I	TTAA	3 cut(s)	279, 585, 1428
TscAI	CASTG	2 cut(s)	339, 1183
TseFI	GTSAC	1 cut(s)	1238
TseI	GCWGC	3 cut(s)	1127, 1130, 1285
Tsp45I	GTSAC	1 cut(s)	1238
TspDTI	ATGAA	7 cut(s)	309, 465, 705, 1172, 1400, 1657, 1811
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	339, 1183
Van91I	CCANNNNNTGG	1 cut(s)	1300
VpaK11BI	GGWCC	4 cut(s)	107, 979, 1472, 1694
XapI	RAATTY	6 cut(s)	67, 316, 345, 572, 650, 1632
XbaI	TCTAGA	1 cut(s)	685
XmaJI	CCTAGG	1 cut(s)	1034
XmiI	GTMKAC	1 cut(s)	1043
XspI	CTAG	5 cut(s)	75, 686, 831, 1035, 1742
Zsp2I	ATGCAT	1 cut(s)	1729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.