Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007780

Physical Location & Seq

Genomic Coordinates Forward (+)

9553317 .. 9563263

Gene Structure 9947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1050500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGACCTCTGCGACTTTCAGCTCCATTTTTTCCCGAACCGGGTGCCTCCGCAAGGACGGGGTGAGCAGTTCGAAGGCCGATACGTGGAATGCGAAGAAGGTGTTTGTTAAATGTTCCGTGAGTACAAAGACCCAGAAAGCAGAAAAGGAAGTTCGCCTTGGTGTTCTTGGAGCCAGTGGTTACACTGGTTCTGAGATTGTTCGGCTCCTTGCAAACCATCCTCACTTTGGCATTACCTTGATGACTGCTGATAGAAAAGCGGGACAGTCAATAGGGTCGGTGTTTCCGCATCTAGTTTCTCAAGATCTACCAAAAATGGTTGCTATCAAGGATGCTGATTTTTCTGATGTGGATGCTGTTTTTTGTTGTTTACCACACGGAACCACACAAGAAATTATCAAAGGCCTTCCCAGGAGTTTAAAGATTGTTGACCTGTCTGCTGACTTCCGTCTACGAGACATCTCGGAGTATGAAGAATGGTATGGTCAGGTACACAGAGCGCCAGAGTTGCAGAAAGAAGTTGTCTATGGTTTGACAGAGATTTTGAGGGAGGAGATAAAAGGTGCACGCCTAGTTGCTAACCCTGGTTGTTATCCAACTTCTGTTCAACTTCCACTTGTTCCATTGATAAAGGCCAATCTCATTGAACCTAAAAATATTATTATTGACTCAAAGTCTGGTGTTAGCGGAGCAGGGCGTGGTGCCAAGGAGGCAAACTTGTACACTGAAATAGCCGAGGGCATATATTCTTATGGTGTTACTCGTCACCGTCATGTTCCGGAAATTGAGCAGGGACTATCTGATGCTGCAAGTTCAAAAGTAACCGTTAGTTTTACTCCACATCTAATGCCAATGAGTCGTGGTATGCAATCCACTATCTATGTGGAACTGGCTCCGGGGCTAAATTTCAAGGACTTGCACCAACACCTCAAGTTATCCTACGAGGATGAAGAATTTGTAGTTGTGTTGGAGGAAGGAGCTGTTCCTCGCACTCATAATACTCGAGGATCCAACTATTGTTTCGTCAATGTCTTTCCTGATAGAATTCCTGGGAGAGCAATAATAATTTCTGTTATTGATAATCTTGTGAAGGGAGCTTCAGGTCAAGCCTTACAGAATCTTAATGTGATGATGGGATTTCCAGAAAACACAGGGCTTCTTTATCAGCCCTTGTTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0016020 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

394

Amino Acids

43.09

Weight (kDa)

7.17

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Semialdhyde_dh	PF01118	53 - 188	4.2e-28	Semialdehyde dehydrogenase, NAD binding domain
Semialdhyde_dhC_1	PF22698	197 - 361	7.9e-59	Semialdehyde dehydrogenase, dimerisation domain
Semialdhyde_dhC	PF02774	206 - 364	6.5e-22	Semialdehyde dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19940 AT2G19940
fragaria_vesca	FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021 FvH4_2g07021
malus_domestica	MD00G1050500.v1.1 MD10G1088500.v1.1
prunus_persica	Prupe.8G115600_v2.0.a1
pyrus_communis	pycom10g07140
rosa_chinensis	RchiOBHm_Chr6g0259381
rosa_laevigata	RLG00000014536
rosa_multiflora	Rmu_sc0012054.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246350 Rroxscaffold_7G00206640
rosa_rugosa	Rorug05G0588300 Rorug05G0588400 Rorug05G0588500
rosa_samantha	Rh6AG104000 Rh6BG097300 Rh6CG093300 Rh6DG087100
rosa_wichuraiana	Rw6G008990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	42, 701
AccI	GTMKAC	1 cut(s)	451
AccIII	TCCGGA	1 cut(s)	778
AciI	CCGC	4 cut(s)	49, 260, 287, 687
AclWI	GGATC	2 cut(s)	1002, 1015
AcsI	RAATTY	3 cut(s)	904, 953, 1044
AcuI	CTGAAG	1 cut(s)	1083
AfaI	GTAC	3 cut(s)	124, 492, 722
AfiI	CCNNNNNNNGG	4 cut(s)	39, 52, 84, 227
AgsI	TTSAA	4 cut(s)	608, 647, 816, 910
AhdI	GACNNNNNGTC	1 cut(s)	673
AjnI	CCWGG	3 cut(s)	410, 583, 1048
AjuI	GAANNNNNNNTTGG	4 cut(s)	141, 173, 1004, 1036
AluBI	AGCT	3 cut(s)	21, 980, 1097
AluI	AGCT	3 cut(s)	21, 980, 1097
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	1 cut(s)	450
Alw44I	GTGCAC	1 cut(s)	564
AlwI	GGATC	2 cut(s)	1002, 1015
Ama87I	CYCGRG	1 cut(s)	1002
Aor13HI	TCCGGA	1 cut(s)	778
AoxI	GGCC	3 cut(s)	75, 403, 633
ApaLI	GTGCAC	1 cut(s)	564
ApeKI	GCWGC	1 cut(s)	806
ApoI	RAATTY	3 cut(s)	904, 953, 1044
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
AspLEI	GCGC	1 cut(s)	502
AsuC2I	CCSGG	2 cut(s)	40, 897
AsuHPI	GGTGA	2 cut(s)	73, 758
AsuII	TTCGAA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	1002
BaeGI	GKGCMC	1 cut(s)	568
BamHI	GGATCC	1 cut(s)	1007
BanI	GGYRCC	2 cut(s)	42, 701
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	1 cut(s)	793
BccI	CCATC	2 cut(s)	225, 1126
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	3 cut(s)	412, 585, 1050
BcnI	CCSGG	2 cut(s)	40, 897
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	2 cut(s)	293, 572
BfoI	RGCGCY	1 cut(s)	503
BglI	GCCNNNNNGGC	1 cut(s)	710
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	1 cut(s)	807
BlsI	GCNGC	1 cut(s)	808
Bme1390I	CCNGG	5 cut(s)	40, 412, 585, 897, 1050
BmeRI	GACNNNNNGTC	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	1002
BmiI	GGNNCC	7 cut(s)	44, 172, 206, 382, 703, 894, 1009
BmrFI	CCNGG	5 cut(s)	40, 412, 585, 897, 1050
BmsI	GCATC	4 cut(s)	298, 322, 343, 793
BoxI	GACNNNNGTC	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	285, 914
BpuMI	CCSGG	2 cut(s)	40, 897
BsaAI	YACGTR	1 cut(s)	84
BsaJI	CCNNGG	7 cut(s)	157, 410, 583, 705, 735, 896, 1049
BsaWI	WCCGGW	1 cut(s)	778
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 52, 84, 227
Bse1I	ACTGG	3 cut(s)	174, 190, 894
BseAI	TCCGGA	1 cut(s)	778
BseBI	CCWGG	3 cut(s)	412, 585, 1050
BseDI	CCNNGG	7 cut(s)	157, 410, 583, 705, 735, 896, 1049
BseGI	GGATG	4 cut(s)	217, 337, 358, 952
BseLI	CCNNNNNNNGG	4 cut(s)	39, 52, 84, 227
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	3 cut(s)	174, 190, 894
BseRI	GAGGAG	1 cut(s)	566
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	1 cut(s)	793
BshFI	GGCC	3 cut(s)	77, 405, 635
BshNI	GGYRCC	2 cut(s)	42, 701
BsiHKAI	GWGCWC	1 cut(s)	568
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	3 cut(s)	39, 779, 896
BslFI	GGGAC	2 cut(s)	276, 807
BslI	CCNNNNNNNGG	4 cut(s)	39, 52, 84, 227
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	2 cut(s)	276, 807
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	77, 405, 635
BsoBI	CYCGRG	1 cut(s)	1002
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp13I	TCCGGA	1 cut(s)	778
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	2 cut(s)	304, 1007
BspACI	CCGC	4 cut(s)	49, 260, 287, 687
BspANI	GGCC	3 cut(s)	77, 405, 635
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	778
BspLI	GGNNCC	7 cut(s)	44, 172, 206, 382, 703, 894, 1009
BspPI	GGATC	2 cut(s)	1002, 1015
BspT104I	TTCGAA	1 cut(s)	71
BspT107I	GGYRCC	2 cut(s)	42, 701
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	3 cut(s)	174, 190, 894
BssECI	CCNNGG	7 cut(s)	157, 410, 583, 705, 735, 896, 1049
BssMI	GATC	2 cut(s)	304, 1007
BssT1I	CCWWGG	2 cut(s)	157, 705
Bst2UI	CCWGG	3 cut(s)	412, 585, 1050
Bst4CI	ACNGT	3 cut(s)	267, 770, 826
BstAUI	TGTACA	1 cut(s)	720
BstBAI	YACGTR	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	2 cut(s)	192, 1179
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	4 cut(s)	217, 337, 358, 952
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	2 cut(s)	307, 1010
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	2 cut(s)	304, 1007
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 710
BstNI	CCWGG	3 cut(s)	412, 585, 1050
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSCI	CCNGG	5 cut(s)	38, 410, 583, 895, 1048
BstSLI	GKGCMC	1 cut(s)	568
BstV1I	GCAGC	1 cut(s)	793
BstX2I	RGATCY	2 cut(s)	304, 1007
BstYI	RGATCY	2 cut(s)	304, 1007
BsuRI	GGCC	3 cut(s)	77, 405, 635
BtsCI	GGATG	4 cut(s)	217, 337, 358, 952
BtsIMutI	CAGTG	3 cut(s)	181, 183, 723
Cac8I	GCNNGC	1 cut(s)	568
CfoI	GCGC	1 cut(s)	502
Csp6I	GTAC	3 cut(s)	123, 491, 721
CviAII	CATG	1 cut(s)	773
CviQI	GTAC	3 cut(s)	123, 491, 721
DdeI	CTNAG	2 cut(s)	192, 1179
DpnI	GATC	2 cut(s)	306, 1009
DpnII	GATC	2 cut(s)	304, 1007
DraI	TTTAAA	1 cut(s)	420
DriI	GACNNNNNGTC	1 cut(s)	673
Eam1105I	GACNNNNNGTC	1 cut(s)	673
Eco130I	CCWWGG	2 cut(s)	157, 705
Eco147I	AGGCCT	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	1083
Eco88I	CYCGRG	1 cut(s)	1002
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	1044
EcoRII	CCWGG	3 cut(s)	410, 583, 1048
EcoT14I	CCWWGG	2 cut(s)	157, 705
ErhI	CCWWGG	2 cut(s)	157, 705
FaeI	CATG	1 cut(s)	776
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	2 cut(s)	276, 807
FatI	CATG	1 cut(s)	772
FauI	CCCGC	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	807
FokI	GGATG	4 cut(s)	204, 344, 365, 959
Fsp4HI	GCNGC	1 cut(s)	807
FspBI	CTAG	2 cut(s)	293, 572
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	1 cut(s)	807
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	3 cut(s)	77, 405, 635
HapII	CCGG	3 cut(s)	39, 779, 896
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	1 cut(s)	776
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	668, 856, 1117
HpaII	CCGG	3 cut(s)	39, 779, 896
HphI	GGTGA	2 cut(s)	73, 758
Hpy166II	GTNNAC	6 cut(s)	371, 430, 452, 493, 566, 723
Hpy188I	TCNGA	4 cut(s)	193, 346, 466, 802
Hpy188III	TCNNGA	5 cut(s)	33, 302, 779, 1037, 1142
Hpy8I	GTNNAC	6 cut(s)	371, 430, 452, 493, 566, 723
HpyAV	CCTTC	5 cut(s)	67, 91, 416, 968, 1084
HpyCH4III	ACNGT	3 cut(s)	267, 770, 826
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	6 cut(s)	212, 511, 566, 809, 868, 919
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 710
HpyF3I	CTNAG	2 cut(s)	192, 1179
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	776
HspAI	GCGC	1 cut(s)	500
Kpn2I	TCCGGA	1 cut(s)	778
Kzo9I	GATC	2 cut(s)	304, 1007
LmnI	GCTCC	7 cut(s)	26, 170, 210, 689, 898, 977, 1094
Lsp1109I	GCAGC	1 cut(s)	793
LweI	GCATC	4 cut(s)	298, 322, 343, 793
MaeI	CTAG	2 cut(s)	293, 572
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	4 cut(s)	179, 757, 764, 820
MalI	GATC	2 cut(s)	306, 1009
MboI	GATC	2 cut(s)	304, 1007
MboII	GAAGA	3 cut(s)	106, 485, 962
MflI	RGATCY	2 cut(s)	304, 1007
MhlI	GDGCHC	1 cut(s)	568
MluCI	AATT	6 cut(s)	393, 783, 904, 953, 1044, 1065
MlyI	GAGTC	2 cut(s)	662, 865
MmeI	TCCRAC	3 cut(s)	620, 948, 1035
MroI	TCCGGA	1 cut(s)	778
MseI	TTAA	3 cut(s)	108, 419, 1122
MslI	CAYNNNNRTG	1 cut(s)	771
MspI	CCGG	3 cut(s)	39, 779, 896
MspR9I	CCNGG	5 cut(s)	40, 412, 585, 897, 1050
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	3 cut(s)	412, 585, 1050
MwoI	GCNNNNNNNGC	2 cut(s)	508, 710
NciI	CCSGG	2 cut(s)	40, 897
NdeII	GATC	2 cut(s)	304, 1007
NlaIII	CATG	1 cut(s)	776
NlaIV	GGNNCC	7 cut(s)	44, 172, 206, 382, 703, 894, 1009
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	1 cut(s)	764
NspV	TTCGAA	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	1002
PceI	AGGCCT	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	1117
PkrI	GCNGC	1 cut(s)	808
PleI	GAGTC	2 cut(s)	662, 864
PpsI	GAGTC	2 cut(s)	662, 864
Ppu21I	YACGTR	1 cut(s)	84
PshAI	GACNNNNGTC	1 cut(s)	447
Psp6I	CCWGG	3 cut(s)	410, 583, 1048
PspGI	CCWGG	3 cut(s)	410, 583, 1048
PspN4I	GGNNCC	7 cut(s)	44, 172, 206, 382, 703, 894, 1009
PspXI	VCTCGAGB	1 cut(s)	1002
PsuI	RGATCY	2 cut(s)	304, 1007
RsaI	GTAC	3 cut(s)	124, 492, 722
RsaNI	GTAC	3 cut(s)	123, 491, 721
RseI	CAYNNNNRTG	1 cut(s)	771
SaqAI	TTAA	3 cut(s)	108, 419, 1122
SatI	GCNGC	1 cut(s)	807
Sau3AI	GATC	2 cut(s)	304, 1007
SchI	GAGTC	2 cut(s)	662, 865
ScrFI	CCNGG	5 cut(s)	40, 412, 585, 897, 1050
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	4 cut(s)	298, 322, 343, 793
Sfr274I	CTCGAG	1 cut(s)	1002
SfuI	TTCGAA	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	1002
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	3 cut(s)	300, 929, 1002
SmoI	CTYRAG	3 cut(s)	300, 929, 1002
Sse9I	AATT	6 cut(s)	393, 783, 904, 953, 1044, 1065
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	4 cut(s)	49, 260, 287, 687
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	293, 572
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	5 cut(s)	38, 410, 583, 895, 1048
StyI	CCWWGG	2 cut(s)	157, 705
TaaI	ACNGT	3 cut(s)	267, 770, 826
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	71, 1003
TasI	AATT	6 cut(s)	393, 783, 904, 953, 1044, 1065
TatI	WGTACW	2 cut(s)	122, 720
TfiI	GAWTC	1 cut(s)	1117
Tru1I	TTAA	3 cut(s)	108, 419, 1122
Tru9I	TTAA	3 cut(s)	108, 419, 1122
TscAI	CASTG	3 cut(s)	181, 190, 730
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	1 cut(s)	806
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	2 cut(s)	486, 963
TspGWI	ACGGA	3 cut(s)	106, 393, 437
TspRI	CASTG	3 cut(s)	181, 190, 730
VneI	GTGCAC	1 cut(s)	564
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	3 cut(s)	904, 953, 1044
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 880
XhoI	CTCGAG	1 cut(s)	1002
XmiI	GTMKAC	1 cut(s)	451
XspI	CTAG	2 cut(s)	293, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.